ID: uc001cib.2_intron_1_0_chr1_43282252_r.3p
GENE: CCDC23(1)
chr1:43282202-43282451-


(5)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(2)
SKIN
(1)
TESTES
(4)
UTERUS

Sense strand
GAGACTTGCCCAGGGACACCCAGCGAGGTTGTGGCCTTGGGACTCGGTTCCTACTCCCCCACATCCAGCGCCCTTGCCACCAGACCACTCTGCCTCACCTGGCAAAGGATGGGGCGGAGCTAAAGGATTAGAGGAGTAACTGGCAGGGTATTTTTTGTTTTGTTTTGTTTTGAAGATCTGCCTCTTTCTGTACCACCCAGATCAGAGCCTCCTAAGAAATATCCAGAAGTCAAGCCATGGATCCACCTGC
.......................................................................................(((((((((((((.....))).))))))))))........((((((.((.(((.(((((((....)))))))..))))).)))))).............................................................................
.................................................................................82.............................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040023(GSM532908)
G575T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040006(GSM532891)
G601N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR343337SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTCTCC.............................................................................2410.000.009.001.00-----------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTTCCC.............................................................................248.000.008.00------------------
.............................................................................................................................................GGCAGGGTATTTTTTGTT...........................................................................................1813.003.00--2.00----------1.00-----
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTTGGC.............................................................................242.000.00-2.00-----------------
............................................................................................................................................................................AAGATCTGCCTCTTTCTGTACCACCC....................................................2612.002.00-----2.00-------------
.............................................................................................................................................GGCAGGGTATTTTTTGCT...........................................................................................182.000.00--2.00----------------
............................................................................................................................................TGGCAGGGTATTTTTAGCT...........................................................................................192.000.00-------1.00--1.00--------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTTCGGG............................................................................252.000.001.001.00-----------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTTCGAG............................................................................252.000.001.001.00-----------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTCGAG.................................................................................201.000.00-1.00-----------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTTGC..............................................................................231.000.001.00------------------
....................................................................................................................................................TATTTTTTGTTTTGTTTTGTTTCC..............................................................................241.000.001.00------------------
....................................................................................................................................................TATTTTTTGTTTTGTTTTGTTCTTG.............................................................................251.000.001.00------------------
......................................................................................ACTCTGCCTCACCTGGCAAAGG..............................................................................................................................................2211.001.00---1.00---------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTTCTGG............................................................................251.000.001.00------------------
....................................................................................................................................................TATTTTTTGTTTTGTTTCGAG.................................................................................211.000.001.00------------------
........................................................................................................AAGGATGGGGCGGAGGTG................................................................................................................................181.000.00----------------1.00--
......................................................................................................................GCTAAAGGATTAGAGGAGTAACTGG...........................................................................................................2511.001.00---1.00---------------
....................................................................................................................................................................TTGTTTTGAAGATCTGCCTCTTT...............................................................2311.001.00---1.00---------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTTGGG.............................................................................241.000.00-1.00-----------------
.............................................................................................................................................GGCAGGGTATTTTTTGGT...........................................................................................181.000.00--1.00----------------
....................................................................................................................................................TATTTTTTGTTTTGTTTTGTTTGTTC............................................................................261.000.001.00------------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTTCCG.............................................................................241.000.001.00------------------
...........................................................................................................................AGGATTAGAGGAGTAACTGG...........................................................................................................2011.001.00---1.00---------------
......................................................................................................................................................TTTTTTGTTTTGTTTTGTTTTGATCTT.........................................................................271.000.00----1.00--------------
......................................................................................................................................................TTTTTTGTTTTGTTTTGTTGCTG.............................................................................231.000.001.00------------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGCTCG...............................................................................221.000.00----1.00--------------
......................................................................................................................................................TTTTTTGTTTTGTTTTGTTTTGATCAG.........................................................................271.000.00----1.00--------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTCGGG.............................................................................241.000.00-1.00-----------------
.....................................................................................................................................................ATTTTTTGTTTTGTTTTGTTCTCG.............................................................................241.000.001.00------------------
..................................................................................................................CGGAGCTAAAGGATTAGAGGAGTAACTGGCAG........................................................................................................3211.001.00------1.00------------
....................................................ACTCCCCCACATCCAAG.....................................................................................................................................................................................171.000.00-----------------1.00-
......................................................................................................................................................TTTTTTGTTTTGTTTTGTTTTGACTTG.........................................................................271.000.00-1.00-----------------
....................................................................................................................................................TATTTTTTGTTTTGTTTTGTTTTCGAG...........................................................................271.000.001.00------------------

Antisense strand
GAGACTTGCCCAGGGACACCCAGCGAGGTTGTGGCCTTGGGACTCGGTTCCTACTCCCCCACATCCAGCGCCCTTGCCACCAGACCACTCTGCCTCACCTGGCAAAGGATGGGGCGGAGCTAAAGGATTAGAGGAGTAACTGGCAGGGTATTTTTTGTTTTGTTTTGTTTTGAAGATCTGCCTCTTTCTGTACCACCCAGATCAGAGCCTCCTAAGAAATATCCAGAAGTCAAGCCATGGATCCACCTGC
.......................................................................................(((((((((((((.....))).))))))))))........((((((.((.(((.(((((((....)))))))..))))).)))))).............................................................................
.................................................................................82.............................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040023(GSM532908)
G575T. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040006(GSM532891)
G601N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR343337SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................................................TCAGAGCCTCCTAAGGTG............................... 181.000.00------------1.00------
..............................................GTTCCTACTCCCCCAAGTT......................................................................................................................................................................................... 191.000.00--------1.00----------
.................................AGGAACCGAGTCCCAAGGC...................................................................................................................................................................................................... 1911.001.00-----------1.00-------
..................................................................................................................................................................................TGCCTCTTTCTGTACCTCC..................................................... 191.000.00---------1.00---------
.........TCGCTGGGTGTCCCTGG................................................................................................................................................................................................................................ 1711.001.00------1.00------------
....................................................................................CCACTCTGCCTCACCTGGGT.................................................................................................................................................. 201.000.001.00------------------
......................................................................................................................................................TTTTTTGTTTTGTTTTGTTTTGAGGCC......................................................................... 271.000.00---------------1.00---
...................................................GCTGGATGTGGGGGAGTA..................................................................................................................................................................................... 1811.001.00--------------1.00----
......................................................................................................................TCCTCTAATCCTTTAGC................................................................................................................... 1720.500.50------------------0.50