ID: uc001cfx.3_intron_2_0_chr1_41213278_f.3p
GENE: (3)
chr1:41215045-41215294+


(12)
B-CELL 		(3)
BRAIN 		(1)
BREAST 		(15)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(5)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
TATGTGCTAGATAAGTATTCTTTCTCCCTGTTACCTGCTTTGTTCCCACTCATGGATTTATTTTACCTTGGAATCTCTTGAGTATACCACCTCATTTTTTGACCCTTGCCCCATAGTCCCATGCCAGGCAATGAGGCAAGAGACAGACTGGTTTGCATGACTTGCTGGTGATTGACAGGGAGGGCCTGTGTCTGTTACAGATGATCAGTGCAGAAGCGCCTGTACTCTTTGCCAAGGCAGCCCAGATTTT
.............................................................................................................................................(((((((.((((.......(((.(((........))).)))))))...)))))))......................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
..............................................................................................................................................................................ACAGGGAGGGCCTGTGTCTGTTA.....................................................23122.0022.001.00-3.00-3.00-2.00--1.001.002.00-----2.00---1.00-1.00----1.001.001.001.00--1.00-------------
.............................................................................................................................................................................GACAGGGAGGGCCTGTGTCTGTTA.....................................................2419.009.002.00------------2.002.00-----------------------1.00--1.00--1.00---
.............................................................................................................................................................................GACAGGGAGGGCCTGTGTCTG........................................................2116.006.00---4.00-----------2.00--------------------------------
..............................................................................................................................................................................ACAGGGAGGGCCTGTGTCTGTT......................................................2214.004.002.00-1.00---1.00-----------------------------------------
...................................................................................................................................................................................................................AGAAGCGCCTGTACTCTT.....................1813.003.001.00----2.00------------------------------------------
.................................................................................................................................................................................................................GCAGAAGCGCCTGTACTCT......................1912.002.00-1.00--1.00-------------------------------------------
..................................................................................................................................................................................................................CAGAAGCGCCTGTACTCTTT....................2012.002.00-1.00------1.00---------------------------------------
...................................................................................................................................................................................................................AGAAGCGCCTGTACTCTTT....................1912.002.001.00----1.00------------------------------------------
..................................................................................................................................................................................................................CAGAAGCGCCTGTACTCT......................1812.002.00---------1.00-----------------1.00--------------------
...........................................................................................................................................................................................................ATCAGTGCAGAAGCG................................1521.501.50------------------1.50-----------------------------
......................................................................................................................................................................................................................AGCGCCTGTACTCTTTGCCAAGGCA...........2511.001.00--------------------------1.00---------------------
...................................................................................................................................................................................................................AGAAGCGCCTGTACTCTTTGCCAAGGC............2711.001.00-----------------------------------1.00------------
........................................................................................................................................................................................................................CGCCTGTACTCTTTGCCAAGGCAGCT........261.000.00-------------------------1.00----------------------
...................................................................................................................................................................................................................AGAAGCGCCTGTACTCTTTGCC.................2211.001.00-1.00----------------------------------------------
....................................................................................................................................................................................................ACAGATGATCAGTGCAGAAGCGCCTGTACTC.......................3111.001.00------------1.00-----------------------------------
..............................................................................................................................................ACAGACTGGTTTGCATGACTTGC.....................................................................................2311.001.00--------------------1.00---------------------------
........................................................................................................................................................................TGATTGACAGGGAGGGCCTGTGT...........................................................2311.001.00------------1.00-----------------------------------
.............................................................................................................................................................................GACAGGGAGGGCCTGTGTCTGT.......................................................2211.001.00----------------------------------------------1.00-
............................................................................................................................................................ATGACTTGCTGGTGAGACT...........................................................................191.000.00------------------------1.00-----------------------
......................................................................................................................................................................................................................AGCGCCTGTACTCTTTGCCAAGGCAGCC........2811.001.00---------------------------------------1.00--------
...................................................................................................................................................................................................................AGAAGCGCCTGTACTCTTTGCCA................2311.001.00----------------------1.00-------------------------
.............................................................................................................................................................................GACAGGGAGGGCCTGTGTCTGTT......................................................2311.001.00---------------------------------1.00--------------
.....................................................................................................................................................................................................................AAGCGCCTGTACTCTTTGCCAAGGCAG..........2711.001.00--------1.00---------------------------------------
..............................................................................................................................................................................................................................TACTCTTTGCCAAGGCAGCCCA......2211.001.00------------------------------------------1.00-----
..........................................................................................................................................................................................TGTGTCTGTTACAGATGATCAGTGCAGA....................................2811.001.00-------1.00----------------------------------------
.......................................................................................................................................................................................................GATGATCAGTGCAGAAGCGCCTGTACTCT......................2911.001.00--------------------------------1.00---------------
..........................................................................................................................................................................................................GATCAGTGCAGAAGCGCC..............................1811.001.00-------------------------------------------1.00----
...........................................................................................................................CCAGGCAATGAGGCAAGAGACAGACCGTG..................................................................................................291.000.00---------------------------------------------1.00--
..................................................................................................................................................................................GGAGGGCCTGTGTCTGTTAAAG..................................................221.000.00-------------------1.00----------------------------
...................................................................................................................................................................................................................AGAAGCGCCTGTACTCTTTGCCAA...............2411.001.00-1.00----------------------------------------------
...........................................................................................................................................................................................................................CTGTACTCTTTGCCAAGGCAG..........2111.001.00------------------------------------1.00-----------
.............................................................................................................................................................................GACAGGGAGGGCCTGGGTC..........................................................191.000.00-----------------------------------------------1.00
...................................................................................................................................................................................................................AGAAGCGCCTGTACTCTTTGCCAAG..............2511.001.00-1.00----------------------------------------------
........................................................................................................................................................................................................................CGCCTGTACTCTTTGCCAAGGCAGCC........2611.001.00----------------1.00-------------------------------
.......................................................................................................................................GCAAGAGACAGACTGGTTTGCATG...........................................................................................2411.001.00-1.00----------------------------------------------
.................................................................................................................................................................................GGGAGGGCCTGTGTCTGAATA....................................................211.000.00-------1.00----------------------------------------
...............................................................................................................................................................................CAGGGAGGGCCTGTGTCTGTTA.....................................................2211.001.00----------1.00-------------------------------------
.......................................................................................................................................................................................GCCTGTGTCTGTTACAG..................................................1720.500.50-------0.50----------------------------------------
...............................................................................................................................................................................CAGGGAGGGCCTGTGTC..........................................................1750.200.20-------------------0.20----------------------------

Antisense strand
TATGTGCTAGATAAGTATTCTTTCTCCCTGTTACCTGCTTTGTTCCCACTCATGGATTTATTTTACCTTGGAATCTCTTGAGTATACCACCTCATTTTTTGACCCTTGCCCCATAGTCCCATGCCAGGCAATGAGGCAAGAGACAGACTGGTTTGCATGACTTGCTGGTGATTGACAGGGAGGGCCTGTGTCTGTTACAGATGATCAGTGCAGAAGCGCCTGTACTCTTTGCCAAGGCAGCCCAGATTTT
.............................................................................................................................................(((((((.((((.......(((.(((........))).)))))))...)))))))......................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)
..........................................................................................................................................................GCATGACTTGCTGGTGTAA............................................................................. 191.000.00----------------------------------------1.00-------
...............................................................TACCTTGGAATCTCTTGAAC....................................................................................................................................................................... 201.000.00-------------------------------------1.00----------
...........................................................................................................................................................CATGACTTGCTGGTGTTTT............................................................................ 191.000.00----------------1.00-------------------------------