ID: uc001cfl.1_intron_0_0_chr1_40915848_f
GENE: (1)
chr1:40915798-40916386+


(2)
AGO2.ip 		(11)
B-CELL 		(3)
BRAIN 		(12)
BREAST 		(28)
CELL-LINE 		(4)
CERVIX 		(6)
HEART 		(2)
HELA 		(2)
OTHER 		(45)
SKIN 		(1)
XRN.ip

Sense strand
CCGGCTGCAGCGGTGGGAAGGCGGGGGCGTGCCGGCCCAGCGGGGAGAGGGTGAGCGGGTGGCTGTCCCGGGCTTGGGGAGCTGGGCGAGCCGGGAAGCGCGAGTTCCGCCCGCGGCCACCCTGTCGCGCGCGGTGCTCTCCGCAGCCCCGGAGTCGTGCTCAGACAAAGGCTGGGAGGCTAGGGCCGGGGGCGTTTTGCTTTGTGGGGAGGACTTAGCCTCTCATTTGGGGAGGAGGAGGCGGGGTCTAGCGGTTTCGCGGTTTGCTACAGCCGACTAGTGAAAGAGCTGGGATTCCAAATCCCCGGCTACTTTACACATAATTACTGCCCCAAACAAAGAATTGGGTTGTATTCGTCTCTTTGTGCTTCCTGACATGTGCGCGGTGCTTTGAATTTTGTGGGCTGTGTCTGCCCACCGTCTCCGTGTATCTTTTGGAAACATTTTACAGTGATCCATATATGTTCTAGCGTTCTGCCCTATGACTGAGCCTCCTTAGTCCTTTGCTGATTCTAATGTCTTCTGCTCAGCATCTGCAGGGGCTGCTGAGAGTAAATACTTGGCGCCTCCAGCTGCTGGCCAAGGAGAC
.......................................................(((.(((((.((((((.((((..((((..(((...(((((..(((.((((.((((.((((((......)))))).)))).))))..)))...))))).)))..))))...)).)).)))))))))))...))).................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.......................................................................................................................................188...............................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR040035(GSM532920)
G001T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040016(GSM532901)
G645N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040009(GSM532894)
G727T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577740(Rovira)
total RNA. (breast)		GSM532888(GSM532888)
G761T. (cervix)		SRR553574(SRX182780)
source: Heart. (Heart)
.....................CGGGGGCGTGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15154.0054.00-6.003.007.006.007.00--2.00-----1.00----1.001.001.00---2.00-1.00---1.002.001.001.00-2.00--1.00---------------1.001.00-------------1.00--1.00-------------------1.00---1.001.00-----1.00----------
.....................CGGGGGCGTGCCGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16140.0054.00-6.007.006.004.001.00--1.00---1.00--1.00----2.00------1.00---1.00-1.001.00--1.00---2.00---------------------------1.00-1.00-------1.00----------------------1.00------------
...............................................................................................................................................................CTCAGACAAAGGCTGGGAGGCTAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................25131.0031.0031.00------------------------------------------------------------------------------------------------------------------
....................GCGGGGGCGTGCCGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17120.0017.00-5.001.00---------1.00--1.00---2.00-1.00---1.00--1.00--------1.00-1.00-----------------1.00-1.001.00----------------------------1.00------1.00------------------
....................GCGGGGGCGTGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16117.0017.00-10.001.00-1.00---1.00---1.00-1.00--------------------------------------------------------------------1.001.00------------------------------
....................GCGGGGGCGTGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1518.008.00--1.00-1.00---2.00---1.00---------------1.00-1.00-------1.00----------------------------------------------------------------------------
..........................................................................................................................................................................................................TGTGGGGAGGACTTAGCCTCTG.............................................................................................................................................................................................................................................................................................................................................................................224.000.00----------1.00-------------1.00-------------------1.00-------------1.00--------------------------------------------------------
............................................................................................................................................................................................................................................................................ACAGCCGACTAGTGAAAGAG.............................................................................................................................................................................................................................................................................................................2013.003.00-------2.00---1.00-------------------------------------------------------------------------------------------------------
................................................................GTCCCGGGCTTGGGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003.00------------------3.00------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCAGCATCTGCAGGGG...............................................1913.003.00-----------------3.00-------------------------------------------------------------------------------------------------
........................................................................CTTGGGGAGCTGGGCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003.00-------3.00-----------------------------------------------------------------------------------------------------------
..............................GCCGGCCCAGCGGGGAGAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003.00---------3.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................................CTCAGACAAAGGCTGGGAGGCCAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................252.000.002.00------------------------------------------------------------------------------------------------------------------
...........................................................................................CGGGAAGCGCGAGTTCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................182.000.00--------------2.00----------------------------------------------------------------------------------------------------
....................GCGGGGGCGTGCCGGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0017.00----------1.00---------------------------1.00----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................GCCGACTAGTGAAAGAGCTGG.........................................................................................................................................................................................................................................................................................................2112.002.00---------2.00---------------------------------------------------------------------------------------------------------
........................................................GGGTGGCTGTCCCGGGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.00-------------2.00-----------------------------------------------------------------------------------------------------
.....................CGGGGGCGTGCCGGCGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0054.00-2.00-----------------------------------------------------------------------------------------------------------------
.................................................................................................................................CGCGGTGCTCTCCGCAGCCCCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002.00---------------1.00--------------------------------1.00------------------------------------------------------------------
........................................................................................................................................................................................................TTTGTGGGGAGGACTTAGCCTCTG.............................................................................................................................................................................................................................................................................................................................................................................242.000.00----------1.00-------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAATTTTGTGGGCTGTG....................................................................................................................................................................................2112.002.00-----------2.00-------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................GTTTTGCTTTGTGGGGAGGACT......................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------------------------------1.00-------------
........................................................................................................................CCTGTCGCGCGCGGTGCTCTCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00-----------------------------1.00-------------------------------------------------------------------------------------
....................................CCAGCGGGGAGAGGGTGAGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------------------------------------------------------------------------1.00--------------
................................................................GTCCCGGGCTTGGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-----------------------------------------------------------------------------------------------------------1.00-------
....................................................................................................................................................................ACAAAGGCTGGGAGGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------------------------------------------------------1.00---------------------------------------
.....................CGGGGGCGTGCCGGCCCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------1.00----------------------------
...................................................................................................................................................................................................................................TGGGGAGGAGGAGGCGGATTG.....................................................................................................................................................................................................................................................................................................................................................211.000.00------1.00------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................TTTGTGGGGAGGACTTAGCTCTG..............................................................................................................................................................................................................................................................................................................................................................................231.000.00----------1.00--------------------------------------------------------------------------------------------------------
...............................................................TGTCCCGGGCTTGGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00--------------------------------------------------1.00----------------------------------------------------------------
.............................................AGAGGGTGAGCGGGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------1.00-----------------------------------------------------------------------------------------------------
.CGGCTGCAGCGGTGGGAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------1.00-------------------------------------------------------------------------------------------------------
.........................................................................................................................CTGTCGCGCGCGGTGCTCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------------------1.00---------------------------------
......................................AGCGGGGAGAGGGTGAGCGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------------------------------------------------1.00----------------------------------------------------
....CTGCAGCGGTGGGAAGGCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------1.00------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGCTGTGTCTGAC..............................................................................................................................................................................181.000.00---------------------------------------------------1.00---------------------------------------------------------------
.........................................................................................................................................................................................................TTGTGGGGAGGACTTAGCCTCTG.............................................................................................................................................................................................................................................................................................................................................................................231.000.00------------------------------1.00------------------------------------------------------------------------------------
.................................................................................................................................CGCGGTGCTCTCCGCAGCCCCGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00----------------------------------------------1.00--------------------------------------------------------------------
................................................................................................................................................................................AGGCTAGGGCCGGGGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------------------------1.00--------------------
.............................................................................................................................................................................................................................................GAGGCGGGGTCTAGCGGGGGG...........................................................................................................................................................................................................................................................................................................................................211.000.00----------------------------------------------------------------------------------------1.00--------------------------
.................................GGCCCAGCGGGGAGAAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------1.00------------------------------------------------------------------------
................................................................................GCTGGGCGAGCCGGGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------1.00----------------------
.......................................................................................................................................................................................................CTTTGTGGGGAGGACTTAGCCTCTG.............................................................................................................................................................................................................................................................................................................................................................................251.000.00----------1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................CGCCCGCGGCCACCCCGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------------------------1.00-----------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................CTACTTTACACATAATTACC.....................................................................................................................................................................................................................................................................201.000.00------------------------------------------------------------------------1.00------------------------------------------
...............................................................................................................................................................CTCAGACAAAGGCTGGGAGGCGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00------------------------------------------------------------------------------------------------------------------
..................................................................CCCGGGCTTGGGGAGCTGGGCGAGCCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00------------------------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................GACAAAGGCTGGGAGGCTAGGGCCG.................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-----------1.00-------------------------------------------------------------------------------------------------------
..................................................................CCCGGGCTTGGGGAGCTGGGCGAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-----------------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................CCGGAGTCGTGCTCAGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------------------1.00-------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................GTGAAAGAGCTGGGATTCCAAATC..............................................................................................................................................................................................................................................................................................2411.001.00------------------------------------------1.00------------------------------------------------------------------------
.................................................................................................................CGGCCACCCTGTCGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00-----------------------------------1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCTGCAGGGGCTG............................................1811.001.00----------------------------------------------------1.00--------------------------------------------------------------
..........CGGTGGGAAGGCGGGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------1.00-----------------------------
.....................CGGGGGCGTGCCGGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0054.00---1.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................TTTTGCTTTGTGGGGAGGACTTAGCCTCTG.............................................................................................................................................................................................................................................................................................................................................................................301.000.00-----------------------------------------------1.00-------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAAACATTTTACAGATC.......................................................................................................................................211.000.00---------------------------------------------------------------1.00---------------------------------------------------
...................................CCCAGCGGGGAGAGGGTGAGCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------1.00------------------------------------------------------------------------------------------------------------
....................................................................CGGGCTTGGGGAGCTGGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---------1.00---------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................TTGGGGAGGAGGAGGCAGAA.......................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------------------1.00--------------------------------------------------
...................................CCCAGCGGGGAGAGGGTGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------------------------------------------------1.00--------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................GTGCGCGGTGCTTTGAATTTTGTGG..........................................................................................................................................................................................2511.001.00------1.00------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGTGGGGAGGACTTAGC..................................................................................................................................................................................................................................................................................................................................................................................1711.001.00------1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................CGCGGTGCTCTCCGCAGCCCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------------------------------1.00---------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGCTGAGAGTAGG.................................171.000.00--------------------------1.00----------------------------------------------------------------------------------------
....................GCGGGGGCGTGCCGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.008.00------------------------------------------------------------------------------------------1.00------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGTGTATCTTTTGGA......................................................................................................................................................1811.001.00--------------------------1.00----------------------------------------------------------------------------------------
.....................CGGGGGCGTGCCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00--1.00----------------------------------------------------------------------------------------------------------------
.............................................................GCTGTCCCGGGCTTGGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------1.00------------------------------------------------------------------------------------------------------------
...................GGCGGGGGCGTGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00--1.00----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................GCGGGGTCTAGCGGTAA............................................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------------------------------------1.00-----------------------------------------------------
............GTGGGAAGGCGGGGGGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------------------------------------------------------1.00-----------------------------------------------
.....................CGGGGGCGTGCCGGCGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0054.00---------------------------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................AGTGAAAGAGCTGGGATTCCAAAT...............................................................................................................................................................................................................................................................................................2411.001.00-------1.00-----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................GAGGAGGAGGCGGGGTA.....................................................................................................................................................................................................................................................................................................................................................171.000.00--------------------------1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................AAACAAAGAATTGGGTTG..............................................................................................................................................................................................................................................1820.500.50-------------------------------------------------------------------------------------------------------------0.50-----
..................................................................................................................................................................................................................................................................................................................................................AAGAATTGGGTTGTATT..........................................................................................................................................................................................................................................1730.330.33----------------------------------------------------------------------------------------------------------------0.33--
.................................................................................CTGGGCGAGCCGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1530.330.33--------------------------------------------0.33----------------------------------------------------------------------
..........................GCGTGCCGGCCCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1530.330.33---------------------------------------------------------------------------------------------------------------0.33---
..................................................................................................................................................................AGACAAAGGCTGGGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................1740.250.25-----------------------------------------------------------------------------------------------------------------0.25-
..........................................................................TGGGGAGCTGGGCGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1660.170.17----------------------------------------------0.17--------------------------------------------------------------------
..........................................................................TGGGGAGCTGGGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1590.110.11------------------------------------------------0.11------------------------------------------------------------------

Antisense strand
CCGGCTGCAGCGGTGGGAAGGCGGGGGCGTGCCGGCCCAGCGGGGAGAGGGTGAGCGGGTGGCTGTCCCGGGCTTGGGGAGCTGGGCGAGCCGGGAAGCGCGAGTTCCGCCCGCGGCCACCCTGTCGCGCGCGGTGCTCTCCGCAGCCCCGGAGTCGTGCTCAGACAAAGGCTGGGAGGCTAGGGCCGGGGGCGTTTTGCTTTGTGGGGAGGACTTAGCCTCTCATTTGGGGAGGAGGAGGCGGGGTCTAGCGGTTTCGCGGTTTGCTACAGCCGACTAGTGAAAGAGCTGGGATTCCAAATCCCCGGCTACTTTACACATAATTACTGCCCCAAACAAAGAATTGGGTTGTATTCGTCTCTTTGTGCTTCCTGACATGTGCGCGGTGCTTTGAATTTTGTGGGCTGTGTCTGCCCACCGTCTCCGTGTATCTTTTGGAAACATTTTACAGTGATCCATATATGTTCTAGCGTTCTGCCCTATGACTGAGCCTCCTTAGTCCTTTGCTGATTCTAATGTCTTCTGCTCAGCATCTGCAGGGGCTGCTGAGAGTAAATACTTGGCGCCTCCAGCTGCTGGCCAAGGAGAC
.......................................................(((.(((((.((((((.((((..((((..(((...(((((..(((.((((.((((.((((((......)))))).)))).))))..)))...))))).)))..))))...)).)).)))))))))))...))).................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.......................................................................................................................................188...............................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR040035(GSM532920)
G001T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040016(GSM532901)
G645N. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040009(GSM532894)
G727T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577740(Rovira)
total RNA. (breast)		GSM532888(GSM532888)
G761T. (cervix)		SRR553574(SRX182780)
source: Heart. (Heart)
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGAATCAGCAAAGGACTAAG........................................................................ 2314.004.00----------------2.00-----2.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGACGGTGGGCAGACA................................................................................................................................................................... 1912.002.00----------------1.00-----1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGGCAGAACGCTAGA.......................................................................................................... 1811.001.00--------------------------------------------------------------------------------1.00----------------------------------
....................................................................................................................................GGTGCTCTCCGCAGCCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------------------------------------------------------------------------------------------1.00-------------------
...............................................................................................................CGCGGCCACCCTGTCTGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------------1.00--------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCAAAGGACTAAGGAGG............................................................................. 2211.001.00----------------------------------------------------------------------------------1.00--------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCTTAGTCCTTTGCTGT............................................................................... 201.000.00--------------------------------------------------------------------------1.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACATTAGAATCAGCA.................................................................. 1911.001.00-----------------------------1.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................CGCACATGTCAGGAAGCA.............................................................................................................................................................................................................. 1811.001.00-----------------------------------------------------------------------------1.00-------------------------------------
.............................................................................................................CCCGCGGCCACCCTGTCGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00------------------------------------------------------1.00------------------------------------------------------------
............GTGGGAAGGCGGGGGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00-----------------------------------------------------------------1.00-------------------------------------------------
.............................................................................................................CCCGCGGCCACCCTGTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00-------------------------------------------------------------------------------------------------------1.00-----------
.................................................................................................GCGCGAGTTCCGCCCGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00----------------------------------------------------------------------------------------------------------1.00--------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAGGACTAAGGAGGC................................................................................. 1911.001.00-----------------------------------1.00-------------------------------------------------------------------------------
.............................................................................................................CCCGCGGCCACCCTGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00----------------------------------------1.00--------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACGCTAGAACATA............................................................................................................... 1811.001.00---------------------------------------------------------------------------------------1.00---------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGACATTAGAATCAGCAAAGGA................................................................. 2511.001.00------------------------------------------------------------------------------1.00------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGACTAAGGAGGCTCAGT.................................................................................... 2111.001.00------------------------------------------------------------------1.00------------------------------------------------
..............................................................................................................................................TTTGTCTGAGCACGACTCCGGGGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................... 2711.001.00-----------------------1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGCAGAAGACATTAGAAT.......................................................... 2211.001.00-------------------------------------------------------------------------------------------1.00-----------------------
.......................................................................................................................................GCTCTCCGCAGCCCCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------------------------------------------------------------------1.00------
...............................................................................................................................GCTGCGGAGAGCACCGCGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2011.001.00---------------------------------------------------------------------------------------------------1.00---------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAAAGGACTAAGGAGGCTC.............................................................................. 2411.001.00-------------------------------------------1.00-----------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAGACGGTGGGCAGAC.................................................................................................................................................................. 1911.001.00-------------1.00-----------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCTCAGCATCTGCAGCGA............................................... 211.000.00--------------------------------------------------------------------1.00----------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAAAGGACTAAGGAGGC.............................................................................. 2211.001.00---------------------1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGACTAAGGAGGCTC.................................................................................... 1811.001.00-----------------------1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGACTAAGGAGGC.................................................................................... 1630.330.33-------------------------------------------0.33-----------------------------------------------------------------------
............................................................................................................................................ACTCCGGGGCTGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1560.330.33-----------------------------------------------0.17------------------------------------------------------------------0.17
............................................................................................................................................GACTCCGGGGCTGCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1650.200.20---------------------------------------------0.20---------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCTCAGCAGCC.................................. 1580.120.12---------------0.12---------------------------------------------------------------------------------------------------