ID: uc001cec.3_intron_7_0_chr1_40318549_r.3p
GENE: (1)
chr1:40318499-40318748-


(3)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(6)
CELL-LINE 		(1)
FIBROBLAST 		(1)
LIVER 		(4)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CTGTAAGTCTTCTGTCTTTTTTGTTTGCTGTGGCCTCATAGCACTTACCACAGCATATTGGAATTTTCTGTTTATGATCTCTCACTATATGGCAAGATCTTCTGATTATTCTGTATTCCTGACAGTTAGCAAAGTGCCTGGCACATACACTGTCTCAGTGTTGGTTGAATTAAATATACTTCTAAACCATCATTTAATAGCCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGAAAAGTGGAGCTTGA
........................................................................................................................((((((.......((((...))))....))))))..((((.((((((((.((....)).)))..))))).))))........................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343337SRR343336SRR343335SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................ACAGTTAGCAAAGTGGC................................................................................................................17281.000.00121.0088.0038.0034.00--------------------
........................................................................................................................GACAGTTAGCAAAGTGGC................................................................................................................18344.672.6717.6724.331.001.67--------------------
.........................................................................................................................ACAGTTAGCAAAGTGGCA...............................................................................................................1842.000.0019.0011.008.004.00--------------------
........................................................................................................................GACAGTTAGCAAAGTGGCA...............................................................................................................19313.672.673.334.001.670.334.33-------------------
.........................................................................................................................ACAGTTAGCAAAGTGGCAT..............................................................................................................194.000.00--4.00---------------------
........................................................................................................................GACAGTTAGCAAAGTG..................................................................................................................1632.672.670.671.67-0.33--------------------
........................................................................................................................GACAGTTAGCAAAGTGGCAT..............................................................................................................2032.332.671.33-1.00---------------------
...........................................................................................................................................................................................................................AGAAAGTGATTGACCGAAAAGTGG.......2411.001.00----------------1.00-------
....AAGTCTTCTGTCTTTGGT....................................................................................................................................................................................................................................181.000.00--------------1.00---------
............................................................................................................................................................................................................................GAAAGTGATTGACCGAAAAGTGGAGC....2611.001.00-----------------1.00------
..............................................................................................................................................................................................................GAGATGGGCACTGAGAAA..........................1811.001.00-------------------1.00----
...............................................................................................................................................................................ATACTTCTAAACCATATC.........................................................181.000.00------------1.00-----------
............................................................................................................................................................................................................AGGAGATGGGCACTGAGTA...........................191.000.00------1.00-----------------
....................................................................TGTTTATGATCTCTCACTATATGGC.............................................................................................................................................................2511.001.00---------1.00--------------
................................................................................................................................................................................................................................GTGATTGACCGAAAAGTGGAGC....2211.001.00-------1.00----------------
.............................................................................................................................................................................................................GGAGATGGGCACTGAGACA..........................191.000.00-------------1.00----------
...............................................................................................................................................................................................................................AGTGATTGACCGAAAAGTGGAG.....2211.001.00--------1.00---------------
..........................................................................................................................................................................................................................GAGAAAGTGATTGACCGAAAAGT.........2311.001.00------------------1.00-----
...............................................................................................................................................................................................................AGATGGGCACTGAGATTTT........................191.000.00---------------1.00--------
..........................................................................................................................................................................................................CCAGGAGATGGGCACTGAGAA...........................2111.001.00--------------------1.00---
........................................................................................................................GACAGTTAGCAAAGTGA.................................................................................................................1730.672.67-0.33-0.33--------------------
............................................................................................................................................................................................................AGGAGATGGGCACTGAGAA...........................1920.500.50------0.50-----------------
.......................TTTGCTGTGGCCTCATAG.................................................................................................................................................................................................................1820.500.50---------------------0.50--
........................................................................................................................GACAGTTAGCAAAGT...................................................................................................................1560.330.33--0.33---------------------
........................................................................................................................GACAGTTAGCAAAGTGGCTC..............................................................................................................2030.332.670.33-----------------------
........................................................................................................................GACAGTTAGCAAAGTGACA...............................................................................................................1930.332.670.33-----------------------
........................................................................................................................GACAGTTAGCAAAGTGGCT...............................................................................................................1930.332.67--0.33---------------------
........................................................................................................................GACAGTTAGCAAAGTTGCA...............................................................................................................1960.170.33----0.17-------------------

Antisense strand
CTGTAAGTCTTCTGTCTTTTTTGTTTGCTGTGGCCTCATAGCACTTACCACAGCATATTGGAATTTTCTGTTTATGATCTCTCACTATATGGCAAGATCTTCTGATTATTCTGTATTCCTGACAGTTAGCAAAGTGCCTGGCACATACACTGTCTCAGTGTTGGTTGAATTAAATATACTTCTAAACCATCATTTAATAGCCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGAAAAGTGGAGCTTGA
........................................................................................................................((((((.......((((...))))....))))))..((((.((((((((.((....)).)))..))))).))))........................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR343337SRR343336SRR343335SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.....AGTCTTCTGTCTTTTTCAT.................................................................................................................................................................................................................................. 192.000.00-----2.00------------------
...................................................................................................................................................................................TTCTAAACCATCATTACAG.................................................... 191.000.00----------1.00-------------
..................................................................................................GTCAGGAATACAGAATAATCAGAAG............................................................................................................................... 2511.001.00-----------1.00------------
....................................................................................................................................................................................TAAATGATGGTTTAGA...................................................... 1680.120.12----------------------0.12-
.................................................................................................................................................................ATATTTAATTCAACCA......................................................................... 1690.110.11-----------------------0.11