ID: uc001ccx.2_intron_1_0_chr1_39494613_f.5p
GENE: (2)
chr1:39494563-39494812+


(1)
AGO1.ip 		(1)
AGO2.ip 		(8)
B-CELL 		(5)
BRAIN 		(10)
BREAST 		(19)
CELL-LINE 		(4)
CERVIX 		(7)
HEART 		(4)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(3)
OTHER 		(23)
SKIN 		(2)
XRN.ip

Sense strand
GCAAGATAGAATATGATGATTTCGTAGAGTGTTTGCTTCGGCAGAAAACGGTAAGGAAATGATGGAGGTGGAAGCTGAATTACTTTCTTGTTCCTTTGGGACTCTTTTTTTTTTTTTTTGAGACGAAGTCTCACTCTTGTCCCCTAGGCTGGTGTGTGATGGCGCCACCTCGTCTCACTGTAGCCTCTGCCTCCCAGGTTCAGGCGATTCGCGTACCTCAGCCTCCCGAGTAGCTGGGATTATAGGCACC
............................................................................................(((..(((((................((((((...)))))).....)))))..))).((((((......))))))...................................................................................
...........................................................................................92..........................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................................................................................................................................................TGGGATTATAGGCACTCTG198.000.00--8.00-----------------------------------------------------------------------------------------
................................................................................................................................................TAGGCTGGTGTGTGATAGGT......................................................................................206.000.00-------------1.00-----2.00-1.00----------1.00--------1.00--------------------------------------------------
..........ATATGATGATTTCGTAGAGTGTTTG.......................................................................................................................................................................................................................2515.005.00-----------2.00-----------------------1.00--------------------1.00-----1.00-----------------------------
................................................................................................................................................TAGGCTGGTGTGTGATAGG.......................................................................................193.000.00-------------1.00--------1.00--------------------------1.00------------------------------------------
..........ATATGATGATTTCGTAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................3213.003.00---2.00-------------------------------------------------------------1.00--------------------------
.CAAGATAGAATATGATGATTTCGTAGAGTGTTTGCTTCGGCAGAAAAC.........................................................................................................................................................................................................4813.003.00-----3.00--------------------------------------------------------------------------------------
................................................................................................................................................TAGGCTGGTGTGTGATAG........................................................................................183.000.00-------------1.00--------1.00-----------------------------------------1.00---------------------------
.......................GTAGAGTGTTTGCTTCGGCAGAAAACG........................................................................................................................................................................................................2722.502.50-------1.00--------0.50----------0.50---0.50------------------------------------------------------------
................................................................................................................................................TAGGCTGGTGTGTGATA.........................................................................................172.000.00-----------------------1.00------------------------1.00-------------------------------------------
................................................................................................TGGGACTCTTTTTTTTTTTTTTTGG.................................................................................................................................252.000.001.001.00------------------------------------------------------------------------------------------
............ATGATGATTTCGTAGAGTGTTTG.......................................................................................................................................................................................................................2312.002.00----2.00---------------------------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTATAG................................................................................................................................222.000.00------------1.00------------------------1.00------------------------------------------------------
..........ATATGATGATTTCGTAGAGTGTTTGC......................................................................................................................................................................................................................2612.002.00----------------------------------1.00-1.00-------------------------------------------------------
...............ATGATTTCGTAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................2721.501.50------1.00------------------------------------------------------------------------------0.50------
..............................................................................................TTTGGGACTCTTTTTTTTTTTTTTTGGCC...............................................................................................................................291.000.00-1.00------------------------------------------------------------------------------------------
................................................................................................................................................TAGGCTGGTGTGTGATATG.......................................................................................191.000.00---------------------------------------------------1.00----------------------------------------
.........................................................................................................................................................................................................................................CTGGGATTATAGGCACTCTG201.000.00------------------------------------------------------------1.00-------------------------------
......TAGAATATGATGATTGGAG.................................................................................................................................................................................................................................191.000.00--------------------------------------------------1.00-----------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGAGACGC............................................................................................................................261.000.00-1.00------------------------------------------------------------------------------------------
.....................TCGTAGAGTGTTTGCTTCGGCAGAAA...........................................................................................................................................................................................................2621.001.00--------------------------------------1.00-----------------------------------------------------
.......................GTAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................1921.001.00-------1.00------------------------------------------------------------------------------------
.CAAGATAGAATATGATGATTTCGTAGAGTGTTTGCTTCGGCAGAAAAA.........................................................................................................................................................................................................481.000.00-----1.00--------------------------------------------------------------------------------------
...AGATAGAATATGATGATTT....................................................................................................................................................................................................................................1931.001.00--------------1.00-----------------------------------------------------------------------------
............ATGATGATTTCGTAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................3011.001.00-----------------1.00--------------------------------------------------------------------------
.................................................................................................................................................AGGCTGGTGTGTGATGCAAA.....................................................................................201.000.00------------------------------------------------------1.00-------------------------------------
..............................................................................................................................................................ATGGCGCCACCTCGTCTCACTGTAGCCACC..............................................................301.000.001.00-------------------------------------------------------------------------------------------
................................................................................................TGGGACTCTTTTTTTTTTTTTTTTTGG...............................................................................................................................271.000.00-1.00------------------------------------------------------------------------------------------
............................................................................................................................................................................TCTCACTGTAGCCTCTTG............................................................181.000.00-------------------------------------------1.00------------------------------------------------
..AAGATAGAATATGATGATT.....................................................................................................................................................................................................................................1931.001.00----1.00---------------------------------------------------------------------------------------
................................................................................................................................................TAGGCTGGTGTGTGATAAAG......................................................................................201.000.00--------------------------------------------1.00-----------------------------------------------
..............GATGATTTCGTAGAGTGTTTGC......................................................................................................................................................................................................................2221.001.00----------1.00---------------------------------------------------------------------------------
..AAGATAGAATATGATGATTTCGTAGAGTG...........................................................................................................................................................................................................................2911.001.00-1.00------------------------------------------------------------------------------------------
................................................................................................................................................TAGGCTGGTGTGTGACA.........................................................................................171.000.00--------------------1.00-----------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGAGAAGGT...........................................................................................................................271.000.001.00-------------------------------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGCCC...............................................................................................................................231.000.00-1.00------------------------------------------------------------------------------------------
..........ATATGATGATTTCGTAGAGTGTTTGCTTCGGCAGA.............................................................................................................................................................................................................3511.001.00---1.00----------------------------------------------------------------------------------------
.....................TCGTAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................2121.001.00---------------0.500.50---------------------------------------------------------------------------
...................................................................................................................................................................................................................................GAGTAGCTGGGATTATAGGCAGGGG251.000.00---------------------------------------------------------------1.00----------------------------
................................................................................................................................................TAGGCTGGTGTGTGATCG........................................................................................181.000.00---------------------1.00----------------------------------------------------------------------
..............GATGATTTCGTAGAGTGTTTGCT.....................................................................................................................................................................................................................2321.001.00-------------------------0.50-----------------------------------------------------0.50------------
.................................................................................................................................................AGGCTGGTGTGTGATGTGA......................................................................................191.000.00-----------------------1.00--------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGTGGG..............................................................................................................................241.000.001.00-------------------------------------------------------------------------------------------
...............................................................................................TTGGGACTCTTTTTTTTTTTTTTTTTTG...............................................................................................................................281.000.00-1.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CTCCCGAGTAGCTGGGATTATAGGGT..261.000.00---------------------------------------------------------1.00----------------------------------
.................................................................................................GGGACTCTTTTTTTTTTTATT....................................................................................................................................211.000.00------------1.00-------------------------------------------------------------------------------
............................................AAAACGGTAAGGAAATGATGG.........................................................................................................................................................................................2111.001.00---------------------------------------------1.00----------------------------------------------
..............................................................................................TTTGGGACTCTTTTTTTTTTTTTTGGCC................................................................................................................................281.000.001.00-------------------------------------------------------------------------------------------
................................................................................................................................................TAGGCTGGTGTGTGATAA........................................................................................181.000.00---------1.00----------------------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGAGAGGGT...........................................................................................................................271.000.001.00-------------------------------------------------------------------------------------------
..............................................................................................TTTGGGACTCTTTTTTTTTTTTTTTGG.................................................................................................................................271.000.001.00-------------------------------------------------------------------------------------------
....GATAGAATATGATGATTTCG..................................................................................................................................................................................................................................2011.001.00----------------------------------------------------------1.00---------------------------------
......................................................................................................TCTTTTTTTTTTTTTTTGAGAAGGC...........................................................................................................................251.000.001.00-------------------------------------------------------------------------------------------
.......AGAATATGATGATTTCGTAGAGTGTTTG.......................................................................................................................................................................................................................2811.001.00---1.00----------------------------------------------------------------------------------------
................................................................................................TGGGACTCTTTTTTTTTTGG......................................................................................................................................201.000.001.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................GAGTAGCTGGGATTATATACT..211.000.00--------------------1.00-----------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGGGG...............................................................................................................................231.000.00-1.00------------------------------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGAGCTGG............................................................................................................................261.000.001.00-------------------------------------------------------------------------------------------
.........AATATGATGATTTCGTAGAGTGTTTGCTTCGGCA...............................................................................................................................................................................................................3411.001.00---1.00----------------------------------------------------------------------------------------
..........ATATGATGATTTCGTAGAGTGTTTGCTTCGGCA...............................................................................................................................................................................................................3311.001.00---1.00----------------------------------------------------------------------------------------
.......................GTAGAGTGTTTGCTTCGGCA...............................................................................................................................................................................................................2021.001.00------0.50--------0.50----------------------------------------------------------------------------
...AGATAGAATATGATGATG.....................................................................................................................................................................................................................................181.000.00-------------------------1.00------------------------------------------------------------------
......TAGAATATGATGATTTCGTAGAG.............................................................................................................................................................................................................................2311.001.00-------------------------------------------------------------1.00------------------------------
..........................................................ATGATGGAGGTGGAAATT..............................................................................................................................................................................181.000.00----------------------------------------------1.00---------------------------------------------
...........TATGATGATTTCGTAGAGTGTTT........................................................................................................................................................................................................................2311.001.00----1.00---------------------------------------------------------------------------------------
...............................................................................................................................................................................CACTGTAGCCTCTGCCTCCCAAGTA..................................................251.000.00---------------------------1.00----------------------------------------------------------------
.....................................................................................................CTCTTTTTTTTTTTTTTTGAGAAAAG...........................................................................................................................261.000.00------------------------1.00-------------------------------------------------------------------
.................................................................................................................................................AGGCTGGTGTGTGATAGG.......................................................................................181.000.00--------------------------1.00-----------------------------------------------------------------
.................GATTTCGTAGAGTGTTTGCTTTGG.................................................................................................................................................................................................................241.000.00----------------1.00---------------------------------------------------------------------------
...............................................................................................TTGGGACTCTTTTTTTTTTTTTTTG..................................................................................................................................2511.001.00-1.00------------------------------------------------------------------------------------------
....................TTCGTAGAGTGTTTGCTTCGGCAGAAAACG........................................................................................................................................................................................................3021.001.00----------------0.50-----------------------------------------------------------------0.50---------
.............TGATGATTTCGTAGAGTGTCTGC......................................................................................................................................................................................................................231.000.001.00-------------------------------------------------------------------------------------------
...............................................................................................TTGGGACTCTTTTTTTTTTTTTTGGCC................................................................................................................................271.000.00-1.00------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TTCGCGTACCTCAGCCTCCCGAGTAGCTG..............2911.001.00-------1.00------------------------------------------------------------------------------------
....GATAGAATATGATGATTTCGTAGAGTTT..........................................................................................................................................................................................................................281.000.00----------1.00---------------------------------------------------------------------------------
............................................................................................................................................................................TCTCACTGTAGCCTCTAAC...........................................................191.000.00------------------------------------------1.00-------------------------------------------------
.............TGATGATTTCGTAGAGTG...........................................................................................................................................................................................................................1821.001.00---------------0.50-----------------------------------------------------------0.50----------------
....................................................................................................ACTCTTTTTTTTTTTTTTATGG................................................................................................................................221.000.00------------------------1.00-------------------------------------------------------------------
............................................................GATGGAGGTGGAAGCTGAATTACT......................................................................................................................................................................2411.001.00----------------------------------------1.00---------------------------------------------------
.........AATATGATGATTTCGTAGAGTGTTTGCTTCGGCAGA.............................................................................................................................................................................................................3611.001.00-----------------------------------------------1.00--------------------------------------------
...............................................................................................TTGGGACTCTTTTTTTTAAG.......................................................................................................................................201.000.001.00-------------------------------------------------------------------------------------------
.................GATTTCGTAGAGTGTTTGCT.....................................................................................................................................................................................................................2021.001.00-----------------1.00--------------------------------------------------------------------------
...............................................................GGAGGTGGAAGCTGAATTAC.......................................................................................................................................................................2011.001.00----------1.00---------------------------------------------------------------------------------
............ATGATGATTTCGTAGAGTG...........................................................................................................................................................................................................................1911.001.00--------1.00-----------------------------------------------------------------------------------
..................................................GTAAGGAAATGATGGAGGTGGAAG................................................................................................................................................................................2411.001.00-----------1.00--------------------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGCAG...............................................................................................................................231.000.00-1.00------------------------------------------------------------------------------------------
..............................................................................................TTTGGGACTCTTTTTTTTTTTTTGG...................................................................................................................................251.000.001.00-------------------------------------------------------------------------------------------
................................................................................................TGGGACTCTTTTTTTTTTTTTTC...................................................................................................................................231.000.001.00-------------------------------------------------------------------------------------------
.................................................................................................GGGACTCTTTTTTTTTTTTTTATTG................................................................................................................................251.000.001.00-------------------------------------------------------------------------------------------
................................................................................................TGGGACTCTTTTTTTTTTTTTTTAGG................................................................................................................................261.000.001.00-------------------------------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGGGGA..............................................................................................................................241.000.00------------1.00-------------------------------------------------------------------------------
..AAGATAGAATATGATG........................................................................................................................................................................................................................................1670.710.71-------------------------------0.43----------------------------------------------------------0.140.14
.CAAGATAGAATATGATGAT......................................................................................................................................................................................................................................1930.670.67--------------0.67-----------------------------------------------------------------------------
.CAAGATAGAATATGATG........................................................................................................................................................................................................................................1750.600.60---------------0.20---------------0.20---------------------------------------------------------0.20--
....................TTCGTAGAGTGTTTGCTTCGGCA...............................................................................................................................................................................................................2320.500.50------------------------------------------------------------------------------------0.50-------
...............ATGATTTCGTAGAGTGTTTGC......................................................................................................................................................................................................................2120.500.50---------------------------------------------------------------------0.50----------------------
....................TTCGTAGAGTGTTTGCTTC...................................................................................................................................................................................................................1920.500.50---------------------------------------------------------------------------------0.50----------
.......................GTAGAGTGTTTGCTTCGGCAGAAAAC.........................................................................................................................................................................................................2620.500.50---------------0.50----------------------------------------------------------------------------
...............ATGATTTCGTAGAGT............................................................................................................................................................................................................................1520.500.50-----------------------------------------------------0.50--------------------------------------
.................GATTTCGTAGAGTGTTTGCTTCGGCAG..............................................................................................................................................................................................................2720.500.50------------------------------0.50-------------------------------------------------------------
................................................................................................................................................TAGGCTGGTGTGTGATGACA......................................................................................2020.500.50----------------------------------------------------------------------0.50---------------------
................................................................................................................................................TAGGCTGGTGTGTGATGTG.......................................................................................1920.500.50-----------------------------------------------------------------------------0.50--------------
..........................................................ATGATGGAGGTGGAAGC...............................................................................................................................................................................1720.500.50---------------------------------0.50----------------------------------------------------------
.....................TCGTAGAGTGTTTGCTTCGGCAGAAAACG........................................................................................................................................................................................................2920.500.50----------------------------0.50---------------------------------------------------------------
...........................AGTGTTTGCTTCGGCAGAA............................................................................................................................................................................................................1920.500.50--------------------------------------------------------------------------------0.50-----------
.............................TGTTTGCTTCGGCAGAAA...........................................................................................................................................................................................................1820.500.50------------------------------------------------------------------------0.50-------------------
..................................GCTTCGGCAGAAAACG........................................................................................................................................................................................................1620.500.50-----------------------------------------------------0.50--------------------------------------
..AAGATAGAATATGATGATTTC...................................................................................................................................................................................................................................2120.500.50--------------0.50-----------------------------------------------------------------------------
...............ATGATTTCGTAGAGTGTTT........................................................................................................................................................................................................................1920.500.50-----------------------------0.50--------------------------------------------------------------
................TGATTTCGTAGAGTGTTTGCTTCGG.................................................................................................................................................................................................................2520.500.50---------------------------------0.50----------------------------------------------------------
.....................TCGTAGAGTGTTTGC......................................................................................................................................................................................................................1520.500.50-----------------------------------------------------------------------0.50--------------------
..................ATTTCGTAGAGTGTTT........................................................................................................................................................................................................................1620.500.50--------------------------------------------------------------------0.50-----------------------
................TGATTTCGTAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................2620.500.50------0.50-------------------------------------------------------------------------------------
......................CGTAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................2020.500.50---------------0.50----------------------------------------------------------------------------
..............GATGATTTCGTAGAGTGTTT........................................................................................................................................................................................................................2020.500.50-----------------------------0.50--------------------------------------------------------------
.............TGATGATTTCGTAGAGTGTTTG.......................................................................................................................................................................................................................2220.500.50--------------------------0.50-----------------------------------------------------------------
.............TGATGATTTCGTAGAGTGTTTGC......................................................................................................................................................................................................................2320.500.50------------------------------------------------------------------------------0.50-------------
......................CGTAGAGTGTTTGCTTCGGCAGAAA...........................................................................................................................................................................................................2520.500.50-----------------------------------------------------------------------------------0.50--------
.............TGATGATTTCGTAGAGTGTTTGCTTCGG.................................................................................................................................................................................................................2820.500.50----------------------------------------------------------------------------0.50---------------
........................TAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................1820.500.50------0.50-------------------------------------------------------------------------------------
.............TGATGATTTCGTAGAG.............................................................................................................................................................................................................................1620.500.50------0.50-------------------------------------------------------------------------------------
.............TGATGATTTCGTAGAGTGTTTGCTTCGGC................................................................................................................................................................................................................2920.500.50--------------------------------------------------------------------------0.50-----------------
................................................................................................................................................TAGGCTGGTGTGTGATG.........................................................................................1720.500.50-------------------------------------------------------------------------0.50------------------
...AGATAGAATATGATGATT.....................................................................................................................................................................................................................................1830.330.33-------------------------0.33------------------------------------------------------------------
....................................................................................................ACTCTTTTTTTTTTTTTTTGAGACGA............................................................................................................................2630.330.33-0.33------------------------------------------------------------------------------------------
.CAAGATAGAATATGATGA.......................................................................................................................................................................................................................................1830.330.33----0.33---------------------------------------------------------------------------------------
..AAGATAGAATATGATGATTT....................................................................................................................................................................................................................................2030.330.33--------------0.33-----------------------------------------------------------------------------
.CAAGATAGAATATGATGATT.....................................................................................................................................................................................................................................2030.330.33---------------------------------------------------------------------------------------0.33----
................................................................................................TGGGACTCTTTTTTTTTTTTTTTGAG................................................................................................................................2640.250.250.25-------------------------------------------------------------------------------------------

Antisense strand
GCAAGATAGAATATGATGATTTCGTAGAGTGTTTGCTTCGGCAGAAAACGGTAAGGAAATGATGGAGGTGGAAGCTGAATTACTTTCTTGTTCCTTTGGGACTCTTTTTTTTTTTTTTTGAGACGAAGTCTCACTCTTGTCCCCTAGGCTGGTGTGTGATGGCGCCACCTCGTCTCACTGTAGCCTCTGCCTCCCAGGTTCAGGCGATTCGCGTACCTCAGCCTCCCGAGTAGCTGGGATTATAGGCACC
............................................................................................(((..(((((................((((((...)))))).....)))))..))).((((((......))))))...................................................................................
...........................................................................................92..........................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR343334SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................................................................................................CTCAGCCTCCCGAGTAGCTGGGATTATCT..... 293.000.00-3.00------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGTAGCCTCTGCCTCCCAGGTTATG............................................... 252.000.00------------------2.00-------------------------------------------------------------------------
.............................................................................................................................................................................CTCACTGTAGCCTCTGCCTCCCAGGTTCTA............................................... 302.000.002.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................TAGCCTCTGCCTCCCAGGTTGA................................................ 221.000.001.00-------------------------------------------------------------------------------------------
..............................................................................................TTTGGGACTCTTTTTTAC.......................................................................................................................................... 181.000.00-----------------------------------------------------------1.00--------------------------------
..................................................................................................................................................................................TGTAGCCTCTGCCTCCCAGGTTA................................................. 231.000.001.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................TCTGCCTCCCAGGTTCAGGCGATAGA....................................... 261.000.00------------------------------1.00-------------------------------------------------------------
................................................................................................................................TCTCACTCTTGTCCCCTAAA...................................................................................................... 201.000.00----------------------------1.00---------------------------------------------------------------
................................................................................................................................................................................................................................CCCGAGTAGCTGGGATTATAGGCGT. 251.000.00---------------------------------------1.00----------------------------------------------------
..............................................................................................................................................................................................CTCCCAGGTTCAGGCGATTACTG..................................... 231.000.001.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................GTAGCCTCTGCCTCCCAGGTTGGGG.............................................. 251.000.00-1.00------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGTAGCCTCTGCCTCCCAGGTACG................................................ 241.000.001.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................GTAGCCTCTGCCTCCCAGGTCGCC............................................... 241.000.001.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................................AGCCTCTGCCTCCCAGGTTCAGGCGATTGG....................................... 301.000.001.00-------------------------------------------------------------------------------------------
..............................................................................................................................................................................TCACTGTAGCCTCTGCCTCCCAGGTTCACCTG............................................ 321.000.00-1.00------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTGAACCTGGGAGGCAGAGG............................................... 2001.001.00--------1.00-----------------------------------------------------------------------------------
..........................................................................................................................ACGAAGTCTCACTCTTGTCCCA.......................................................................................................... 221.000.00-------------------------------------------------------1.00------------------------------------
......................................................................................................................................................................................................................ACCTCAGCCTCCCGAGTAGCTGGGACTGG....... 291.000.00----------------------------------------------------1.00---------------------------------------
......................................................................................................................................................................................GCCTCTGCCTCCCAGGTTCAGGCGATGTA....................................... 291.000.001.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................TCTGCCTCCCAGGTTCAGAG............................................. 201.000.00--------1.00-----------------------------------------------------------------------------------
......................................................................................................................................................................................GCCTCTGCCTCCCAGGTTCACACC............................................ 241.000.00-1.00------------------------------------------------------------------------------------------
...........................................................................................................................................................................................TGCCTCCCAGGTTCAGGCGATTTAAG..................................... 261.000.00-1.00------------------------------------------------------------------------------------------
.........................................................................................................................GACGAAGTCTCACTCTCCGG............................................................................................................. 201.000.001.00-------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CCTCTGCCTCCCAGGTTCAGGCGATTGTGG..................................... 301.000.001.00-------------------------------------------------------------------------------------------
..........................................................................................................................................................................................CTGCCTCCCAGGTTCAGGCGATTTTGC..................................... 271.000.001.00-------------------------------------------------------------------------------------------
....................................................AAGGAAATGATGGAGGCCTT.................................................................................................................................................................................. 201.000.00------------------------------------------------------------------1.00-------------------------
..................................................................................................................................................................................TGTAGCCTCTGCCTCCCAGGTATG................................................ 241.000.001.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TACCTCAGCCTCCCGATAA.................. 191.000.00---------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................................AATCGCCTGAACCTGGGAGGCAGAGGCTA......................................... 2930.330.33-0.33------------------------------------------------------------------------------------------
............................................................................................................................GCCTAGGGGACAAGAGTGAGACTTC..................................................................................................... 2560.170.17-----------------------------0.17--------------------------------------------------------------