uc001ccn.3_intron_0_0_chr1_38478538

TGTCTGGTGCTGGCAGGGTCCCTCTCATCCTTGGGCAGAGCCCAGTTGTGGGGAGGGGAGGGAACAGGGTCATGGGTTAGCTCCAAGGACTGGATTTACTGAGCACTCCAGAGACTCCTGTGCCTGTTAGATGTCGTGTTGATTTGGATATGTGTTTGCGGAGGAAACTAAGCACTGTTGTTCTTTCTTTTGTCTTCTAGCCTGGCTTTCGAAAACATCTGGGCCTGCTGGAGAAAAAGAAAGATTACAA
....................................................................................................(((((((((((((((..(((.......)))..))).......))))))...))))))((..((....))..)).............................................................................
............................................................................................93..................................................................................177.......................................................................

Size

Perfect hit

Total Norm

Perfect Norm

DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)

SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)

SRR060168(GSM565978)
5-8F_nucleus. (cell line)

SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)

SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)

SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)

SRR040010(GSM532895)
G529N. (cervix)

SRR189787

SRR040028(GSM532913)
G026N. (cervix)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)

SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)

SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)

GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)

SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)

SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)

SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)

SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)

SRR553575(SRX182781)
source: Kidney. (Kidney)

SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)

SRR040011(GSM532896)
G529T. (cervix)

SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)

SRR040009(GSM532894)
G727T. (cervix)

GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)

GSM532874(GSM532874)
G699T. (cervix)

SRR189782

SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)

SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

TAX577741(Rovira)
total RNA. (breast)

SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)

SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)

SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)

SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)

GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)

GSM532887(GSM532887)
G761N. (cervix)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)

SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)

SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)

SRR037944(GSM510482)
293DcrTN_cand5. (cell line)

SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)

SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

........................................................................................................................................................TGTTTGCGGAGGAAACTGAGA.............................................................................

33.00

0.00

3.00

1.00

2.00

1.00

........................................................................................................................................................TGTTTGCGGAGGAAACTGAG..............................................................................

8.00

0.00

1.00

............................................................................................................................TGTTAGATGTCGTGTTGATTTGGATATGTGTTTGCGGAGGAAACTAAGCACTGTTGTTCTTTCTTTTGTCTTCTAGA.................................................

7.00

0.00

7.00

...........................................................................................................................CTGTTAGATGTCGTGTTGATTTGGATATGTGTTTGCGGAGGAAACTAAGCACTGTTGTTCTTTCTTTTGTCTTCTA...................................................

6.00

....................................................................................................................................GTCGTGTTGATTTGGATATGTGTTTGCGGAGGAAACTAAGCACTGTTGTTCTTTCTTTTGTCTTCTAG..................................................

5.00

......................................................................................................................................................................................................................ACATCTGGGCCTGCTGGAG.................

3.00

.................................................................................................ACTGAGCACTCCAGAGAC.......................................................................................................................................

3.00

.....................................................................................................................................................................................................................AACATCTGGGCCTGCTGGAGA................

3.00

1.00

....................................................................................................................................................................................................................AAACATCTGGGCCTGCTGGAGA................

2.00

1.00

........................................................................................................ACTCCAGAGACTCCTGTGCCT.............................................................................................................................

2.00

.......................................................................................................................................................................................TTTCTTTTGTCTTCTGGGG................................................

2.00

0.00

2.00

...........................................................................................................................................................................................................................TGGGCCTGCTGGAGAAAAAGAAAGATTAC..

1.00

..............................................TGTGGGGAGGGGAGGGAACAGGGTCATGGG..............................................................................................................................................................................

1.00

........................................................................................................................................................TGTTTGCGGAGGAAACTGA...............................................................................

1.00

0.00

1.00

..............................................TGTGGGGAGGGGAGGGATTTT.......................................................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................AGAGACTCCTGTGCCTGCTAG........................................................................................................................

1.00

0.00

1.00

......................................................................................................................................................................................................................ACATCTGGGCCTGCTGGAGAA...............

1.00

..................................................................................................CTGAGCACTCCAGAGACTC.....................................................................................................................................

1.00

..........................................................................................................................................................TTTGCGGAGGAAACTGCAT.............................................................................

1.00

0.00

1.00

..................................................................................................................................................................................................................GAAAACATCTGGGCCTGCTG....................

1.00

.....................................................................................................................................................................................................................AACATCTGGGCCTGCTGG...................

1.00

...............................................................................................................................................................................TGTTGTTCTTTCTTTTGTTC.......................................................

1.00

0.00

1.00

.................................................GGGGAGGGGAGGGAACTCTG.....................................................................................................................................................................................

1.00

0.00

1.00

.........CTGGCAGGGTCCCTCTC................................................................................................................................................................................................................................

1.00

..............................................TGTGGGGAGGGGAGGGAGGAG.......................................................................................................................................................................................

1.00

0.00

1.00

............................................................................TTAGCTCCAAGGACTGGGATT.........................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................................................................TCTGGGCCTGCTGGAGAA...............

1.00

...........................................................................................................................................................................................................................TGGGCCTGCTGGAGAAAAAGAAAGA......

1.00

........................................................................................................................................................................................................................ATCTGGGCCTGCTGGAGAA...............

1.00

...............................................................................................TTACTGAGCACTCCAGAGACT......................................................................................................................................

1.00

...............................................................................................................................................................................TGTTGTTCTTTCTTTTCGT........................................................

1.00

0.00

1.00

..........................................................................................TGGATTTACTGAGCACTCCAGAGACTC.....................................................................................................................................

1.00

..........................................................................................TGGATTTACTGAGCAGC...............................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................................................................................................................TCTGGGCCTGCTGGAGAAAAAGAA.........

1.00

...............................................................................................TTACTGAGCACTCCAGAGAC.......................................................................................................................................

1.00

...........................................................................................................................................................................................................................TGGGCCTGCTGGAGAAAAAGAAAG.......

1.00

........................................................GGAGGGAACAGGGTCGA.................................................................................................................................................................................

1.00

0.00

1.00

.....................................................................................................................................................................................................................AACATCTGGGCCTGCTGGAGT................

1.00

0.00

1.00

....TGGTGCTGGCAGGGTTTG....................................................................................................................................................................................................................................

1.00

0.00

1.00

..................................................................................................................................................................................................................................GCTGGAGAAAAAGAAAGATTA...

1.00

................................................................................................................................................................................................................................CTGCTGGAGAAAAAGAAAGA......

1.00

...................................................................................................................................................................................................................AAAACATCTGGGCCTGCT.....................

1.00

.........................................................................................................................................................GTTTGCGGAGGAAACTGAGA.............................................................................

1.00

0.00

1.00

...............................................................................................................................................................................................................................CCTGCTGGAGAAAAAGAAAGATTACA.

1.00

.................................................................................................................................................................................................................CGAAAACATCTGGGCCTGCTG....................

1.00

...................CCCTCTCATCCTTGGGCAGAGC.................................................................................................................................................................................................................

1.00

....................................................................................................................................................................................................................................TGGAGAAAAAGAAAGATT....

0.20

TGTCTGGTGCTGGCAGGGTCCCTCTCATCCTTGGGCAGAGCCCAGTTGTGGGGAGGGGAGGGAACAGGGTCATGGGTTAGCTCCAAGGACTGGATTTACTGAGCACTCCAGAGACTCCTGTGCCTGTTAGATGTCGTGTTGATTTGGATATGTGTTTGCGGAGGAAACTAAGCACTGTTGTTCTTTCTTTTGTCTTCTAGCCTGGCTTTCGAAAACATCTGGGCCTGCTGGAGAAAAAGAAAGATTACAA ....................................................................................................(((((((((((((((..(((.......)))..))).......))))))...))))))((..((....))..))............................................................................. ............................................................................................93..................................................................................177.......................................................................	Size	Perfect hit	Total Norm	Perfect Norm	DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR207116(GSM721078) Nuclear RNA. (cell line)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela)	SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood)	SRR060168(GSM565978) 5-8F_nucleus. (cell line)	SRR330871(SRX091709) tissue: skin psoriatic involveddisease state:. (skin)	SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin)	SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver)	SRR330908(SRX091746) tissue: normal skindisease state: normal. (skin)	SRR040010(GSM532895) G529N. (cervix)	SRR189787	SRR040028(GSM532913) G026N. (cervix)	SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line)	SRR444049(SRX128897) Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)	SRR330911(SRX091749) tissue: normal skindisease state: normal. (skin)	SRR330896(SRX091734) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin)	GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain)	SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR444061(SRX128909) Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)	SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin)	SRR330872(SRX091710) tissue: skin psoriatic involveddisease state:. (skin)	SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin)	SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin)	SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin)	SRR330913(SRX091751) tissue: normal skindisease state: normal. (skin)	SRR330906(SRX091744) tissue: normal skindisease state: normal. (skin)	SRR553575(SRX182781) source: Kidney. (Kidney)	SRR330882(SRX091720) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line)	SRR040011(GSM532896) G529T. (cervix)	SRR191492(GSM715602) 154genomic small RNA (size selected RNA from . (breast)	SRR040009(GSM532894) G727T. (cervix)	GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela)	GSM532874(GSM532874) G699T. (cervix)	SRR189782	SRR191629(GSM715739) 5genomic small RNA (size selected RNA from to. (breast)	SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell)	SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell)	TAX577741(Rovira) total RNA. (breast)	SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin)	SRR039193(GSM494812) HL60 cell line is derived from acute promyelo. (cell line)	DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela)	SRR191595(GSM715705) 72genomic small RNA (size selected RNA from t. (breast)	SRR191560(GSM715670) 77genomic small RNA (size selected RNA from t. (breast)	SRR330894(SRX091732) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR107296(GSM677703) 18-30nt fraction of small RNA. (cell line)	GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain)	GSM532887(GSM532887) G761N. (cervix)	SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart)	SRR342898(SRX096794) small RNA seq of Right atrial tissue. (heart)	SRR033723(GSM497068) L1236 cell line (L1236). (B cell)	SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin)	SRR330920(SRX091758) tissue: normal skindisease state: normal. (skin)	SRR037944(GSM510482) 293DcrTN_cand5. (cell line)	SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin)	SRR387909(GSM843861) specific-host: Homo sapienshost cell line: Su. (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR191596(GSM715706) 73genomic small RNA (size selected RNA from t. (breast)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................CCCAAGGATGAGAGGGACC.......................................................................................................................................................................................................................	19	1	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................CCTCTCATCCTTGGGCAGACAT................................................................................................................................................................................................................	22		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................CACTGTTGTTCTTTCAGC............................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................TGATTTGGATATGTGTTGC............................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00
...................................................................................................................................................................................GTTCTTTCTTTTGTCTCAAG...................................................	20		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
................CTGCCCAAGGATGAGAGGGACC....................................................................................................................................................................................................................	22	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................TTTACTGAGCACTCCAAAA.........................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................AGAAGACAAAAGAAAGAACAACAG....................................................	24	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
......................TCTCATCCTTGGGCAACTC.................................................................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-