ID: uc001cci.2_intron_8_0_chr1_38445206_r.3p
GENE: (8)
chr1:38445156-38445405-


(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(6)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(8)
HEART
(2)
HELA
(2)
LIVER
(2)
OTHER
(17)
SKIN

Sense strand
AGGCACATGCCATCATGCCCAGCTAATTCAGATAATTTTTTGTAGAGACAAGATTTCACCATGTTTCCCTGCCTGGTCTCTAACTCCTGAACTCAAGCAATTCACCTATCTTGGCCTCCCAAAATGCTGAGATTACAGGTGTGAGCCACCACACCTGGCCTAAACCTGGATCTTAATAAATACCATATTGTTCTTTCCAGAAAGAGACAAGCAGTGCCCTGACCCATGCTGGAGCCCATCTTGACCTCTC
.........................................................................(((.(((..((.(((((((((.((((...........((((....))))..))))))).)).)))).))))))))......................................................................................................
...................................................................68..................................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR343335SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR189786SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................CTGGTCTCTAACTCCTGAACTCTG..........................................................................................................................................................2427.000.00-8.004.001.00--------2.00--1.00-2.00--1.00-2.00----1.001.00----1.00--1.00---1.00-----1.00--------------
..............................................................................TCTAACTCCTGAACTCTG..........................................................................................................................................................1813.000.00--2.003.001.00---3.00-----1.001.00------------------------------------1.001.00-------
..............................................................................................................................CTGAGATTACAGGTGTGAGGGG......................................................................................................2210.000.0010.00------------------------------------------------------------
...........................................................................GTCTCTAACTCCTGAACTCTG..........................................................................................................................................................215.000.00--1.002.002.00--------------------------------------------------------
............................................................................TCTCTAACTCCTGAACTCTG..........................................................................................................................................................204.000.00----1.00--------------1.001.00-----1.00----------------------------------
.............................................................................CTCTAACTCCTGAACTCTG..........................................................................................................................................................194.000.00------2.00------------------1.00-----------------------------1.00-----
..................................................................................................................CCTCCCAAAATGCTGAGGGGG...................................................................................................................212.000.00----------2.00--------------------------------------------------
.........................................................................TGGTCTCTAACTCCTGAACTCTG..........................................................................................................................................................232.000.00----1.00---------------------------------------------------1.00----
................................................................................................................................................................................................................AAGCAGTGCCCTGACCCATGCTGG..................2412.002.00----------------------------------1.00------1.00-------------------
..........................................................................................................................AATGCTGAGATTACAGGTGTGAGCCACCGCT.................................................................................................312.000.00-------2.00-----------------------------------------------------
.......................................................................................................................................................................................................................GCCCTGACCCATGCTGGAGC...............2011.001.00------------------------------------------------------1.00------
.....................................................................................CCTGAACTCAAGCAAAACC..................................................................................................................................................191.000.00---------------------------------------------------------1.00---
.........................................................................................................................................................................................................AAGAGACAAGCAGTGCCCTGAC...........................2211.001.00-------------------------------------1.00-----------------------
.......................................................................................................................CAAAATGCTGAGATTACAGTCCT............................................................................................................231.000.00----------------------------------------------------------1.00--
........................................................................................................................................................................................................AAAGAGACAAGCAGTGCCCTGACCCATGC.....................2911.001.00---------------------1.00---------------------------------------
...........................................................................................................................................................................................................GAGACAAGCAGTGCCCTGACC..........................2111.001.00------------------------------------------------1.00------------
.......................................................................................................................CAAAATGCTGAGATTCCAC................................................................................................................191.000.00------------------------------------------1.00------------------
..........................................................................GGTCTCTAACTCCTGAACTCAAGCAATTCAC.................................................................................................................................................3111.001.00-----------------------1.00-------------------------------------
.....................................................................................CCTGAACTCAAGCAAGATT..................................................................................................................................................191.000.00-------------------1.00-----------------------------------------
..................................................................................................................................................................................................................GCAGTGCCCTGACCCATGCTGGAG................2411.001.00-------------1.00-----------------------------------------------
............................................................................................................................................................................................................AGACAAGCAGTGCCCTGA............................1811.001.00-------------------------------------------1.00-----------------
...................................TTTTTTGTAGAGACAAG......................................................................................................................................................................................................1701.001.00---------------------------------------1.00---------------------
....................................................................................................................................TTACAGGTGTGAGCCACCACACCTGGCGGAC.......................................................................................311.000.00------------------1.00------------------------------------------
...............................................................TTTCCCTGCCTGGTCCTTG........................................................................................................................................................................191.000.00-------------------------------------------------1.00-----------
..........................................................................GGTCTCTAACTCCTGAACTCTG..........................................................................................................................................................221.000.00------1.00------------------------------------------------------
..........................................................................................................................................................................................................AGAGACAAGCAGTGCCCTGAC...........................2111.001.00-----1.00-------------------------------------------------------
..........................................................................................................................................................................................................AGAGACAAGCAGTGCCCTGACCCACG......................261.000.00------------------1.00------------------------------------------
..........................................................................GGTCTCTAACTCCTGAACTCCG..........................................................................................................................................................221.000.00----1.00--------------------------------------------------------
..............................................................................TCTAACTCCTGAACTCAAGCAATTCACCT...............................................................................................................................................2911.001.00--------------------------------------------------1.00----------
................................................................................................................................................................................................................AAGCAGTGCCCTGACCCATGCTGGAGCCCATC..........3211.001.00-------------1.00-----------------------------------------------
...........................................................................................................................................................................................................GAGACAAGCAGTGCCCTGACCCATGCT....................2711.001.00--------------1.00----------------------------------------------
........................................................................................................................................................................................................................CCCTGACCCATGCTGGAGC...............1911.001.00---1.00---------------------------------------------------------
.................................................................................................................................................................................................................................ATGCTGGAGCCCATCTTGACCTCTC2520.500.50-----------------------------------------------------------0.50-
...............................................................................................................................................................................................................CAAGCAGTGCCCTGA............................1570.140.14------------------------------------------------------------0.14

Antisense strand
AGGCACATGCCATCATGCCCAGCTAATTCAGATAATTTTTTGTAGAGACAAGATTTCACCATGTTTCCCTGCCTGGTCTCTAACTCCTGAACTCAAGCAATTCACCTATCTTGGCCTCCCAAAATGCTGAGATTACAGGTGTGAGCCACCACACCTGGCCTAAACCTGGATCTTAATAAATACCATATTGTTCTTTCCAGAAAGAGACAAGCAGTGCCCTGACCCATGCTGGAGCCCATCTTGACCTCTC
.........................................................................(((.(((..((.(((((((((.((((...........((((....))))..))))))).)).)))).))))))))......................................................................................................
...................................................................68..................................................................................152................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR343335SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR189786SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................................CACCACACCTGGCCTAACAA.................................................................................... 204.000.00-----4.00-------------------------------------------------------
............................................................................................................................................................................................................AGACAAGCAGTGCCCTGATTGT........................ 2212.000.00-------------------------------1.001.00----------------------------
............................................................................................................................................................................................................AGACAAGCAGTGCCCTGATTTT........................ 2212.000.00---------------------------------------------1.00-----1.00---------
.........................ATTCAGATAATTTTTGTAG.............................................................................................................................................................................................................. 192.000.00---------2.00---------------------------------------------------
...........................................................CATGTTTCCCTGCCTGAAGC........................................................................................................................................................................... 201.000.00---------------------1.00---------------------------------------
...............................................................................................................................................................................................................CAAGCAGTGCCCTGACAT......................... 1871.000.00--------------------------------------------1.00----------------
............................................................................................................................................GTGAGCCACCACACCTGGCCTACTTG.................................................................................... 261.000.00-------1.00-----------------------------------------------------
...................................................................................................................CTCAGCATTTTGGGAG....................................................................................................................... 1601.001.00-----------------------------------1.00-------------------------
................................................................................................................................................GCCACCACACCTGGCCTAACT..................................................................................... 211.000.00-----------------------1.00-------------------------------------
.................................................................................................................................................TCCAGGTTTAGGCCAGGTGTGGTGG................................................................................ 2511.001.00------1.00------------------------------------------------------
.............................................................................................................................................................................................................TCAGGGCACTGCTTGTC............................ 1711.001.00-----------1.00-------------------------------------------------
..............................................................................................................................................................................................................ACAAGCAGTGCCCTGAATAG........................ 201.000.00----------------1.00--------------------------------------------
................................................................................................................................................GCCACCACACCTGGCCTAAC...................................................................................... 201.000.00--------------------------------------1.00----------------------
.................................................................................................................CCTGTAATCTCAGCATTTTGGGAGGC............................................................................................................... 2601.001.00-----------------------------1.00-------------------------------
............................................................................................................................................................................................................AGACAAGCAGTGCCCTGATGG......................... 2111.000.00-----------1.00-------------------------------------------------
................................................................................................................................................GCCACCACACCTGGCCGGT....................................................................................... 191.000.00------------------------------1.00------------------------------
............................................................................................................................................................................................................AGACAAGCAGTGCCCTGATGTT........................ 2211.000.00------------------------1.00------------------------------------
............................................................................................................................................................................................................AGACAAGCAGTGCCCTGAAT.......................... 2011.000.00----------------1.00--------------------------------------------
.........CCATCATGCCCAGCTAATTGGTG.......................................................................................................................................................................................................................... 231.000.00-----------------------------------------------1.00-------------