ID: uc001cbk.2_intron_7_0_chr1_38042158_r.3p
GENE: (8)
chr1:38042108-38042357-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(6)
B-CELL 		(4)
BRAIN 		(6)
BREAST 		(21)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AATGACTCACCTCTGATTTATTAATAAGCATATGTATCCAGCTTACTCAGATTATGTAGGTGGTGTGTATCTAGGCTTCAGATCAAGTTGTATCAACAGTTTTGCACTGTATTCTTGATATTAACAAAGTAATACAACCTACTTGTCCAAAGGGATATATATGACTGCATGTATGTGCTGTGTATTCTCTCTTTGAACAGTTGCACACTGACAAGAAACAGATCAGTGTTGGGTTCATTGGCTATCCAAA
...............................................................................................................................................(((.((((((((...((((.((.((((....)))).))))))..)))))))).)))...................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189782SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACAGT.................................................23126.0026.005.006.00---------2.00-1.00--1.00-1.00----1.00-------1.001.00----1.001.00----1.00--1.001.00------1.00-1.00----
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACAGA.................................................23115.0013.002.00-----3.00-1.00-1.00--1.001.00-1.00-1.00----------------1.00-----1.00--1.00--------------1.00-
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACAG..................................................22113.0013.00-----3.00--2.003.00----------------1.00------------------1.00---1.00-1.00--------1.00
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAAC....................................................2016.006.004.00----------------1.00----------1.00--------------------------------
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACAGAATC..............................................2615.0013.00--5.00----------------------------------------------------------
....................................................................................................................................................................................TGTATTCTCTCTTTGAACAGTT................................................2214.004.004.00------------------------------------------------------------
........................................................................................................................................................................................................................AACAGATCAGTGTTGGGTTCATT...........2314.004.00---4.00---------------------------------------------------------
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAACA...................................................2114.004.00----------1.00----------------1.00-------------------------1.00---1.00---
....................................................................................................................................................................................................................AAGAAACAGATCAGTGTT....................1813.003.00-------3.00-----------------------------------------------------
..................................................................................................................................................................................TGTGTATTCTCTCTTTGAA.....................................................1913.003.00---------------2.00---------1.00-----------------------------------
.................................................................................................................................................TCCAAAGGGATATATATGACTGC..................................................................................2313.003.00---------------------1.00--------------------1.00---------------1.00--
........................................................................................................................................................................................................................AACAGATCAGTGTTGGG.................1712.002.00------------------------1.00---------------1.00--------------------
...................................................................................................................................................................................GTGTATTCTCTCTTTGAACAGT.................................................2212.002.00--------------1.00-----------------------------------1.00----------
.................................................................................................................................................................................CTGTGTATTCTCTCTTTGAACAGT.................................................2412.002.00-------------------2.00-----------------------------------------
...............................................................................................................................................TGTCCAAAGGGATATATATGAAA....................................................................................231.000.00----------------------------------------------------1.00--------
...............................................................................................................................................................................................................................CAGTGTTGGGTTCATTGGCTATC....2311.001.00---------------------------------------1.00---------------------
..............................................................................................................................................TTGTCCAAAGGGATATATATGAC.....................................................................................2311.001.00----1.00--------------------------------------------------------
..............................................................................................................................................TTGTCCAAAGGGATATATATGACTGTA.................................................................................271.000.00---1.00---------------------------------------------------------
........................................................................................................................................................................................................................AACAGATCAGTGTTGGGTTCATTGGC........2611.001.00-------------------------------------------------------1.00-----
.....................................................................................................................ATATTAACAAAGTAAACTG..................................................................................................................191.000.00----1.00--------------------------------------------------------
...................................................................................................................................................................................................................................GTTGGGTTCATTGGCAGT.....181.000.00------------------------------------------------1.00------------
...............................................................................................................................................TGTCCAAAGGGATATATATGAC.....................................................................................2211.001.00----1.00--------------------------------------------------------
.........................................................................................................................................................................TGTATGTGCTGTGTATTCTCTCTTTGAACAG..................................................3111.001.00------------1.00------------------------------------------------
.................................................................................................................................................TCCAAAGGGATATATATGACTG...................................................................................2211.001.00-----------------1.00-------------------------------------------
....................................................................................................................................................................................TGTATTCTCTCTTTGAACAGAA................................................221.000.00---------------------------------1.00---------------------------
...............................................................................................................................................................TATGACTGCATGTATGTGCTGTGTATTCT..............................................................2911.001.00------------1.00------------------------------------------------
........................................GCTTACTCAGATTATGTAG...............................................................................................................................................................................................1911.001.00------------------------------1.00------------------------------
...............................................................................................................................................TGTCCAAAGGGATATATATGACTGC..................................................................................2511.001.00-----------------------------1.00-------------------------------
...................................................................................................................................................CAAAGGGATATATATAAA.....................................................................................181.000.00------------------------------------1.00------------------------
......................................................................................................................................................................................................AGTTGCACACTGACAAGAAACA..............................2211.001.00--------------------1.00----------------------------------------
.................................................................................................................................................TCCAAAGGGATATATATGACTGCA.................................................................................2411.001.00-1.00-----------------------------------------------------------
................................................AGATTATGTAGGTGGTGTAGA.....................................................................................................................................................................................211.000.00----------------------------------1.00--------------------------

Antisense strand
AATGACTCACCTCTGATTTATTAATAAGCATATGTATCCAGCTTACTCAGATTATGTAGGTGGTGTGTATCTAGGCTTCAGATCAAGTTGTATCAACAGTTTTGCACTGTATTCTTGATATTAACAAAGTAATACAACCTACTTGTCCAAAGGGATATATATGACTGCATGTATGTGCTGTGTATTCTCTCTTTGAACAGTTGCACACTGACAAGAAACAGATCAGTGTTGGGTTCATTGGCTATCCAAA
...............................................................................................................................................(((.((((((((...((((.((.((((....)))).))))))..)))))))).)))...................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189782SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
...........................................................................................................................................................TATATATGACTGCATCTAG............................................................................ 191.000.00----1.00--------------------------------------------------------
...................................................................................................................................ATACAACCTACTTGTCCAAGCT................................................................................................. 221.000.00----------------------1.00--------------------------------------