ID: uc001cbk.2_intron_2_0_chr1_38033959_r
GENE: (13)
chr1:38033909-38034501-


(3)
AGO2.ip 		(3)
B-CELL 		(3)
BRAIN 		(14)
BREAST 		(27)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(9)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TATCAGAAGTTTCTAGACAAAGCCAAAGCCAAAAAGTTTTCAGCAGTCAGGTAATATTTTCATCTTCTCACAAATTGCAGATTTTCATTCCTTTCCCAAAAATTTGCCATGAGTACCAGAGCCATATTTTTACATGGGGTTATTGCCATTTGTTTGTTCGGTTGGGTTTTTTGTTTGTTTGTTTTTTGAGACGGCGTCTCGCTATGTTGCCTAGACTGGCCTCACTCTCCTGGGTTCAAGCAATGCTGTCATCTCAGCCTCCTAAGTAGCTGTGACTACAGGTGTGCACCACCACACTTGGCTGTTATTGCCATTTTTAAAAAGTGAACTGTAAATTTTGTAAAATTCAGCTGCCTGCAGTATGAGAAGCTTTAGAAACACCCAGGGAGGTACAAACATGTTGGATGTTGACTTCTTCCACTGGTGATAACTACTTGGATAGGAGTGGGGTTTCTTTAGTCTGTGAGTTTGTCGCAGGTCTCCAGGTCAGTATGTGATTCGGGCGAGTGAGAGGAGGAATGTTACTTTGCTTTTCTGTTTCAGAATATCCAAGGGACTGAGTGAAAAGATATTTGCAAAACCTGAAGAACAAA
.........................................................................................................................(((.......(((...(((....)))...))).........)))............................................................................................................................................................................................................................................................................................................................................................................................................................................
.........................................................................................................................122..................................................................191................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029127(GSM416756)
A549. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577738(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2610.000.001.009.00------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTTGTCGCAGGTCTCCAGGTCAGTATGTGATTCGGGCGAGTGAGAGGAGGAATGTTACTTTGCTTTTCTGTTTCA...................................................7919.009.00---9.00----------------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTTCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................267.000.003.004.00------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCTCCAGGTCAGTATGTGATTCGGGCGAGTGAGAGGAGGAATGTTACTTTGCTTTTCTGTTTCA...................................................6715.005.00---5.00----------------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................253.000.001.002.00------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................AGTGAACTGTAAATTTTGTAAAATTCAG...................................................................................................................................................................................................................................................2813.003.00------------3.00-------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................AAGCTTTAGAAACACCCAGGGAGGTACAAACA...................................................................................................................................................................................................3213.003.00----------3.00---------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................243.000.00-3.00------------------------------------------------------------------------
.................................................................................................................................................................TTGGGTTTTTTGTTTGTCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................212.000.002.00-------------------------------------------------------------------------
.........................................................................................................................................................TTGTTCGGTTGGGTTTTTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................212.000.002.00-------------------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTCTC............................................................................................................................................................................................................................................................................................................................................................................................................................192.000.002.00-------------------------------------------------------------------------
.........................................................................................................................................................TTGTTCGGTTGGGTTTTCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................202.000.002.00-------------------------------------------------------------------------
.................................................................................................................................................................TTGGGTTTTTTGTTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................222.000.002.00-------------------------------------------------------------------------
.....................GCCAAAGCCAAAAAGTTTTCAGCAGTCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................312.000.00--------------------------------------1.00---1.00-------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAAAACCTGAAGAACA..2011.001.00-----------------------------------------1.00--------------------------------
...................................................................................................................................................................................................................................................................................................................................GTGAACTGTAAATTTTGTAAAATTCA....................................................................................................................................................................................................................................................2611.001.00-----------------1.00--------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATTTGCAAAACCTGAAGAA....2311.001.00-------------------------------1.00------------------------------------------
...................................................................................................................................................................GGGTTTTTTGTTTGTTTGTTTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00-------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGACTGAGTGAAAAGAT.......................2011.001.00-----------------------------------1.00--------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGCTTC........................................................................................................................................................................................................................................................................................................................................................................................................................231.000.001.00-------------------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTTTCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................261.000.001.00-------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCAAGGGACTGAGTGA.............................2011.001.00-----------1.00--------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTTTTCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00-1.00------------------------------------------------------------------------
..............................................................................................................................TTTTTACATGGGGTTATTGCCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.001.00-------------------------------------------------------------------------
...................................................................................................................................................................GGGTTTTTTGTTTGTTTGTTGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00-------------------------------------------------------------------------
........................................................................................................................................................TTTGTTCGGTTGGGTTTTTTGTTTGCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................291.000.00-1.00------------------------------------------------------------------------
......................................................................................................................................................................................TTTTTGAGACGGCGTCTGCTC......................................................................................................................................................................................................................................................................................................................................................................................................211.000.001.00-------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCCAAGGGACTGAGT...............................2011.001.00-------------------------------------------1.00------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................221.000.001.00-------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATATTTGCAAAACCTGAAGAACA..2611.001.00-------------------------------------------------1.00------------------------
..........................................................................................................................................................................................................................................TTCAAGCAATGCTGTAGC.....................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------1.00-----------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-1.00------------------------------------------------------------------------
............................................................................................................................................................TTCGGTTGGGTTTTTTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------1.00----------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGACTGAGTGAAAAGATATTTGCA................2811.001.00-----------------------------------------------1.00--------------------------
.....................................................................................................................................................................................TTTTTTGAGACGGCGTAC..........................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------------------------------1.00-----------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCCAAGGGACTGAAAG..............................2111.001.00---------------------------------------1.00----------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTTTTTGGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00-1.00------------------------------------------------------------------------
......................................................................CAAATTGCAGATTTTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00----------------------------------1.00---------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGACTGAGTGAAAAGATATTTGC.................2611.001.00------------------------------1.00-------------------------------------------
....................................................................................................................................................................GGTTTTTTGTTTGTTTGTTTTTTTTAG..................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00-1.00------------------------------------------------------------------------
.................................................................................................................................................................TTGGGTTTTTTGTTTGTTTGTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00-------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGCGAGTGAGAGGAGG............................................................................1911.001.001.00-------------------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTCTGC......................................................................................................................................................................................................................................................................................................................................................................................................................251.000.001.00-------------------------------------------------------------------------
............................................................................................................................................................................................................TGTTGCCTAGACTGGGTCG..................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00-------------------------------------------------------------------------
..........................AGCCAAAAAGTTTTCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------1.00---------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATATCCAAGGGACTGAGTGAA............................2411.001.00----------------1.00---------------------------------------------------------
.......................................................................................................................................................................................TTTTGAGACGGCGTCTCGCTATGT..................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00---------1.00----------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTCCGC......................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00-1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGATTCGGGCGAGTGAGAGG...............................................................................2411.001.00---------------------------------------------------1.00----------------------
..........................................................................................................................................................................................................................................................................................TGTGCACCACCACACTTTGT...................................................................................................................................................................................................................................................................................................201.000.00--------------------------------------------------1.00-----------------------
......................................................................................................................................................TGTTTGTTCGGTTGGGTTTTTTTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.001.00-------------------------------------------------------------------------
................................................................................................................................................GCCATTTGTTTGTTCGGTTGGGTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.001.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGATATTTGCAAAACCTGAAGAAC...2711.001.00-----------1.00--------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-1.00------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACTGAGTGAAAAGATATTTGCA................2511.001.00-------1.00------------------------------------------------------------------
...................................................................................................................................................................GGGTTTTTTGTTTGTTTGTTTTTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00-1.00------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACTTTGCTTTTCTGTTTCAG..................................................2411.001.00---------------------------------------------------------1.00----------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTGTGAGTTTGTCGCTCG...................................................................................................................211.000.001.00-------------------------------------------------------------------------
.................................................................................................................................................................TTGGGTTTTTTGTTTGTTTGTTTCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00-1.00------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGACTGAGTGAAAAGATTTT....................221.000.00-----------------1.00--------------------------------------------------------
..................................................................................................................................................................................................................................................................................ACTACAGGTGTGCACCACCACACGGCT....................................................................................................................................................................................................................................................................................................271.000.001.00-------------------------------------------------------------------------
....AGAAGTTTCTAGACAAAGCCAAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------1.00----------------------------------------------------
.......................................................................................................................................................................................TTTTGAGACGGCGTCTCGCTGC....................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-1.00------------------------------------------------------------------------
.........................................................................................................................................................TTGTTCGGTTGGGTTTTTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00-------------------------------------------------------------------------
.............................................................................................................................................................TCGGTTGGGTTTTTTGTTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00-------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCCAAGGGACTGA.................................1811.001.00--------------------------1.00-----------------------------------------------
........................................................................................................................................................................................TTTGAGACGGCGTCTCGCTGC....................................................................................................................................................................................................................................................................................................................................................................................................211.000.001.00-------------------------------------------------------------------------
....................................................................................................................................................TTTGTTTGTTCGGTTGGGTTTTTTGTTTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00-1.00------------------------------------------------------------------------
.................................................................................................................................................................TTGGGTTTTTTGTTTGTTTGTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00-------------------------------------------------------------------------
...............................................................................................................................................................................TGTTTGTTTTTTGAGACGGCGTCTCGCTATG...................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-1.00------------------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTCTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00-------------------------------------------------------------------------
.....................................................................................................................................................TTGTTTGTTCGGTTGGGTTTTTTGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................261.000.00-1.00------------------------------------------------------------------------
................................................................................................................................................................GTTGGGTTTTTTGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................1501.001.00----------------------------------------------------------1.00---------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAGATATTTGCAAAACCTGAAGA.....2711.001.00------------------------------------------------1.00-------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTTGTCGCAGGTCTCCAGGTCAGTATGTGATTCGGGCGAGTGAGAGGAGGAATGTTACTTTGCTTTTCTGTTCCA...................................................791.000.00---1.00----------------------------------------------------------------------
....................................................................................................................................................TTTGTTTGTTCGGTTGGGTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.001.00-------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAATATCCAAGGGACTGAGTGT.............................241.000.00---------------------------------------------1.00----------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGACTGAGTGAAAAGATA......................2111.001.00----------------------1.00---------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGATATTTGCAAAACCT..........2011.001.00--------------------------------1.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGACTGAGTGAAAAGATATTTGCAAAACC...........3211.001.00-------------------------------------1.00------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGGACTGAGTGAA............................1811.001.00-------------------------1.00------------------------------------------------
..........................................................................................................................................................................................................................................................................TAGCTGTGACTACAGGTGTGCACCACGCCC.........................................................................................................................................................................................................................................................................................................301.000.00-1.00------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................AGCTGTGACTACAGGTGTGCATA...............................................................................................................................................................................................................................................................................................................231.000.00-------1.00------------------------------------------------------------------
..................................................................................................................................................................TGGGTTTTTTGTTTGTTTGTTCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................241.000.001.00-------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGACTGAGTGAAAAGA........................1920.500.50---------------------------------------------------------------------0.50----
........................................................................................................................................................................................................................................GGTTCAAGCAATGCTGT........................................................................................................................................................................................................................................................................................................................................................1730.330.33-----------------------------------------------------------------------0.33--
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGACTGAGTGAAA...........................1640.250.25-------------------------------------------------------------------------0.25

Antisense strand
TATCAGAAGTTTCTAGACAAAGCCAAAGCCAAAAAGTTTTCAGCAGTCAGGTAATATTTTCATCTTCTCACAAATTGCAGATTTTCATTCCTTTCCCAAAAATTTGCCATGAGTACCAGAGCCATATTTTTACATGGGGTTATTGCCATTTGTTTGTTCGGTTGGGTTTTTTGTTTGTTTGTTTTTTGAGACGGCGTCTCGCTATGTTGCCTAGACTGGCCTCACTCTCCTGGGTTCAAGCAATGCTGTCATCTCAGCCTCCTAAGTAGCTGTGACTACAGGTGTGCACCACCACACTTGGCTGTTATTGCCATTTTTAAAAAGTGAACTGTAAATTTTGTAAAATTCAGCTGCCTGCAGTATGAGAAGCTTTAGAAACACCCAGGGAGGTACAAACATGTTGGATGTTGACTTCTTCCACTGGTGATAACTACTTGGATAGGAGTGGGGTTTCTTTAGTCTGTGAGTTTGTCGCAGGTCTCCAGGTCAGTATGTGATTCGGGCGAGTGAGAGGAGGAATGTTACTTTGCTTTTCTGTTTCAGAATATCCAAGGGACTGAGTGAAAAGATATTTGCAAAACCTGAAGAACAAA
.........................................................................................................................(((.......(((...(((....)))...))).........)))............................................................................................................................................................................................................................................................................................................................................................................................................................................
.........................................................................................................................122..................................................................191................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029127(GSM416756)
A549. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577738(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATT................................................................................................................................................................................................................................................................................................................................................................................................... 1915.000.00--11.00-----1.00-------1.00-1.00----------------------------------1.00--------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTGTT.............................................................................................................................................................................................................................................................................................................................................................................................. 248.000.00----2.004.00------------------------------1.00-----------------1.00-------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTGTTA............................................................................................................................................................................................................................................................................................................................................................................................. 256.000.00----3.001.00---1.00------------------------------1.00---------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTTTA.............................................................................................................................................................................................................................................................................................................................................................................................. 245.000.00--1.00---1.00-1.001.00--------------1.00-------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTACT................................................................................................................................................................................................................................................................................................................................................................................................... 193.000.00--3.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTTT............................................................................................................................................................................................................................................................................................................................................................................................... 233.000.00----1.00----------1.00----------------------------1.00-----------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATTA.................................................................................................................................................................................................................................................................................................................................................................................................. 203.000.00--2.00---1.00-------------------------------------------------------------------
............................................................................................................................................................................................AGACGGCGTCTCGCTAGTT.................................................................................................................................................................................................................................................................................................................................................................................................. 193.000.00--3.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATTTA................................................................................................................................................................................................................................................................................................................................................................................................. 212.500.00------0.50-----------0.500.50-----------------------------------------0.50--0.50---------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTT................................................................................................................................................................................................................................................................................................................................................................................................ 222.000.00----0.50---0.50--------------------------------------------------------0.50--0.50-----
..............................................................................................................................................................................................CAACATAGCGAGACGCCGT................................................................................................................................................................................................................................................................................................................................................................................................ 1921.501.50-------------------------------------------------------1.00-------0.50----------
............................................................................................................................................................................................AGACGGCGTCTCGCTGTA................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-------------------1.00------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................TAAATTTTGTAAAATTATAA.................................................................................................................................................................................................................................................. 201.000.00------------------------------------------------------------1.00-------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTGTGA............................................................................................................................................................................................................................................................................................................................................................................................. 251.000.00----1.00---------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................CAGTATGAGAAGCTTATG.......................................................................................................................................................................................................................... 181.000.00--------------1.00-----------------------------------------------------------
.............................................................................................................................................................................................GACGGCGTCTCGCTACCTT................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00---------------------------------1.00----------------------------------------
....................................................................CACAAATTGCAGATTTTTCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00----------------------------------------------1.00---------------------------
............................................................................................................................................................................................AGACGGCGTCTCGCTATGTTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................... 261.000.00-------------1.00------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTAGT................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTGCTA............................................................................................................................................................................................................................................................................................................................................................................................. 251.000.00--1.00-----------------------------------------------------------------------
............................................................................................................................................................................................GGCAACATAGCGAGACGCCGTCT.............................................................................................................................................................................................................................................................................................................................................................................................. 2311.001.00-------1.00------------------------------------------------------------------
............................................................................................................................................................................................AGACGGCGTCTCGCTAGT................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTTAA.............................................................................................................................................................................................................................................................................................................................................................................................. 241.000.00----1.00---------------------------------------------------------------------
..................................................................................................................................................................................................CGTCTCGCTATGTTGTCAA............................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------------1.00--------------------------------------------------
............................................................................................................................................................................................AGACGGCGTCTCGCTATGTATTG.............................................................................................................................................................................................................................................................................................................................................................................................. 231.000.00----1.00---------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTGTGT............................................................................................................................................................................................................................................................................................................................................................................................. 251.000.00---------------------------1.00----------------------------------------------
............................................................................................................................................................................................AGACGGCGTCTCGCTATC................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTGCCTA............................................................................................................................................................................................................................................................................................................................................................................................ 261.000.00-----------1.00--------------------------------------------------------------
.............................................................................................................................................................................................GACGGCGTCTCGCTAGCA.................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00--1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATG................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATTT.................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00--------------------------------------------------------------0.50-------0.50---
.................................................................................................................................................................................................................................................................................GACTACAGGTGTGCACCACCACACTCAGC................................................................................................................................................................................................................................................................................................... 291.000.00-1.00------------------------------------------------------------------------
............................................................................................................................................................................................AGACGGCGTCTCGCTATTTG................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00-----------------------------1.00--------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTACG................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................. 241.000.00--1.00-----------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATAGGAGTGGGGTCA............................................................................................................................................ 181.000.00------1.00-------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTGCTA............................................................................................................................................................................................................................................................................................................................................................................................. 251.000.00-------------1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................CAGTATGAGAAGCTTATGT......................................................................................................................................................................................................................... 191.000.00--------------1.00-----------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGATAACTACTTGGATAAC...................................................................................................................................................... 191.000.00--1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATTTA................................................................................................................................................................................................................................................................................................................................................................................................. 211.000.00--1.00-----------------------------------------------------------------------
.........................................................................................CCTTTCCCAAAAATTTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------------------------1.00---------------------
........................................................................................................................................................................................................................................GGTTCAAGCAATGCTGGAA...................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------------------1.00--------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATTTG................................................................................................................................................................................................................................................................................................................................................................................................. 211.000.00--0.50----0.50------------------------------------------------------------------
...........................................................................................................................................................................................ATAGCGAGACGCCGTCTC.................................................................................................................................................................................................................................................................................................................................................................................................... 1820.500.50-------------------------------------------------------------------0.50------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTTA............................................................................................................................................................................................................................................................................................................................................................................................... 230.500.00--------0.50-----------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATTAA................................................................................................................................................................................................................................................................................................................................................................................................. 210.500.00------------------0.50-------------------------------------------------------
..............................................................................................................................................................................................ACGGCGTCTCGCTATGTTGGT.............................................................................................................................................................................................................................................................................................................................................................................................. 210.500.00--0.50-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTGTT............................................................................................................................................................................................................................................................................................................................................................................................... 230.500.00--0.50-----------------------------------------------------------------------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATTCC................................................................................................................................................................................................................................................................................................................................................................................................. 210.500.00------------------------------------------------------------------0.50-------
...........................................................................................................................................................................................GAGACGGCGTCTCGCTATGTTTT............................................................................................................................................................................................................................................................................................................................................................................................... 230.500.00--0.50-----------------------------------------------------------------------
...........................................................................................................................................................................................ACATAGCGAGACGCCGTCTC.................................................................................................................................................................................................................................................................................................................................................................................................. 2020.500.50-----0.50--------------------------------------------------------------------
.............................................................................................................................................................................................CAACATAGCGAGACGCCGTC................................................................................................................................................................................................................................................................................................................................................................................................ 2020.500.50--0.50-----------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACCTGGAGACCT...................................................................................................... 1640.250.25------------------------------------------------------------------------0.25-