ID: uc001cbb.3_intron_0_0_chr1_37940231_f.3p
GENE: (1)
chr1:37940860-37941109+


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BREAST 		(13)
CELL-LINE 		(4)
CERVIX 		(5)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(19)
SKIN 		(1)
UTERUS

Sense strand
TTAATGTCTGTGCCTCAGTTTCTCCCTTTATAGAATGGGAATGGGAATGCCTAGCTGGGAGAGCTTTTGAGAGGACAACCTGAACTAATAACACGATGCAGTGTGTAGTGCCACCAATCCCTCATCCTGCTGGATGTGGTTTTGGGAGGGAGGTTAGGAGAGAGCGCTATTCACCGTCCCTAACCCTGTTGGTTGTTCAGTAGGAGCTGTGGCGCGGGGCCTTCCAGGAGTCTGAGCTATGAGTGGCCCC
..................................................(((((.((((.......((((.(((........((((...((((......)))).))))........)))))))))))))))).....................................................................................................................
..................................................51....................................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR040023(GSM532908)
G575T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189784
....................................................AGCTGGGAGAGCTTTAGA....................................................................................................................................................................................1823.000.009.00----3.00-----1.00-----2.001.00--1.00-1.001.00-1.00-----1.00-------1.001.00--------------
.............................................................................................CGATGCAGTGTGTAGTGCCACCAATCCCTCATCCTGCTGGATGTGGTTTTGGGAGGGAGGTTAGGAGAGAGCGC...................................................................................7412.002.00----------------2.00---------------------------------------
..........................................................................................................................................................................................................................GCCTTCCAGGAGTCTGAGCTATG.........2312.002.00---------------------------1.00---------------1.00------------
......................................................................................................................................................................................................................CGGGGCCTTCCAGGAGTCTGAGC.............2312.002.00---------------2.00----------------------------------------
.................................................................................................................................................................................................................................AGGAGTCTGAGCTATGAGTG.....2012.002.00-1.001.00-----------------------------------------------------
....................................................................................................................ATCCCTCATCCTGCTACAG...................................................................................................................192.000.00-------------------1.00---------------------------1.00--------
.........................................................GGAGAGCTTTTGAGAGGACAACCTGAACTAA..................................................................................................................................................................3111.001.00--------------1.00-----------------------------------------
....................................................AGCTGGGAGAGCTTTTGAGA..................................................................................................................................................................................2011.001.00------------------------------1.00-------------------------
........................................................GGGAGAGCTTTTGAGAGGACAACC..........................................................................................................................................................................2411.001.00-1.00------------------------------------------------------
...........................................................................................................................................................................................................................CCTTCCAGGAGTCTGAGCTATGAGTGGCCCC3111.001.00---------------------------------1.00----------------------
........................CCTTTATAGAATGGGAATGGGAATGC........................................................................................................................................................................................................2611.001.00--------------------1.00-----------------------------------
........................................................GGGAGAGCTTTTGAGAGGACAA............................................................................................................................................................................2211.001.00--1.00-----------------------------------------------------
.....................................................................................................................................ATGTGGTTTTGGGAGGGAG..................................................................................................1911.001.00-------------------------------------1.00------------------
............................................................................................................................................................................................TTGGTTGTTCAGTAGGAG............................................1811.001.00--------1.00-----------------------------------------------
....................................................................GAGAGGACAACCTGAAC.....................................................................................................................................................................1711.001.00------------------------------------------1.00-------------
...........................................................................CAACCTGAACTAATAACACGATGC.......................................................................................................................................................2411.001.00-------------------------------------------------1.00------
...............................................................................................................CACCAATCCCTCATCCTGCTGG.....................................................................................................................2211.001.00-------1.00------------------------------------------------
..................................................CTAGCTGGGAGAGCTTTTGAGAGGACAAC...........................................................................................................................................................................2911.001.00-----------------------------------1.00--------------------
...........................................................................................................................................................................................GTTGGTTGTTCAGTAGGAG............................................1911.001.00-----------------------------1.00--------------------------
....................................................................................................................................................................................TAACCCTGTTGGTTGTTCAGTA................................................2211.001.00--------------------------------------------1.00-----------
..............................................................................................................................................................................................................................TCCAGGAGTCTGAGCTATGAGTGGCC..2611.001.00------------1.00-------------------------------------------
.....................................................................AGAGGACAACCTGAACTAATAACACGATGCAGTGT..................................................................................................................................................3511.001.00-------1.00------------------------------------------------
.......................................................................................................................................................................................................GTAGGAGCTGTGGCGCGGGG...............................2011.001.00----------------------------------1.00---------------------
............................................................................................................................................................................................................................CTTCCAGGAGTCTGAGCTATGAGTGGAA..281.000.00--------------1.00-----------------------------------------
........................................................GGGAGAGCTTTTGAGAGGACAATA..........................................................................................................................................................................2411.001.00-1.00------------------------------------------------------
.........................................................GGAGAGCTTTTGAGAGGACAAC...........................................................................................................................................................................2211.001.00-1.00------------------------------------------------------
....................................................................................................................................................................................TAACCCTGTTGGTTGTTCAGTAG...............................................2311.001.00--------------------------------------1.00-----------------
..............................................................................................................................................................................CGTCCCTAACCCTGTTGGTTGTTCAG..................................................2611.001.00----------------------1.00---------------------------------
......................................................................................................................................................................................................................................TCTGAGCTATGAGTGGC...1711.001.00----------1.00---------------------------------------------
..............................................................................................................................................TGGGAGGGAGGTTAGGAGAGAGCGCTATTCACCGTCCCTAACCCTGTTGGTTGTTCAGTAG...............................................6111.001.00----------------------------------------------1.00---------
........................................................................................................................................TGGTTTTGGGAGGGAGGTTACACC..........................................................................................241.000.00-------------1.00------------------------------------------
...............................................................................................................................................................................................GTTGTTCAGTAGGAGCTGTGGC.....................................2211.001.00------1.00-------------------------------------------------
..........................................................GAGAGCTTTTGAGAGGACAACCTGAACTAATA................................................................................................................................................................3211.001.00-------------------------1.00------------------------------
.......................................................................AGGACAACCTGAACTAATAACACGATGCAG.....................................................................................................................................................3011.001.00------1.00-------------------------------------------------
................................................................................................................................................................................TCCCTAACCCTGTTGGTTGTTCAGTAG...............................................2711.001.00----------------------------------------------------1.00---
............................................................................................................................................................................................TTGGTTGTTCAGTAGGTTTG..........................................201.000.00---------------------------------------1.00----------------
.................................................................................................................................................................................................................................AGGAGTCTGAGCTATGAGT......1911.001.00-1.00------------------------------------------------------
....................................................AGCTGGGAGAGCTTTAGG....................................................................................................................................................................................181.000.00-----------1.00--------------------------------------------
...................................................TAGCTGGGAGAGCTTTTGAGAGGACAAC...........................................................................................................................................................................2811.001.00-1.00------------------------------------------------------
....................................................AGCTGGGAGAGCTTTTGAGAGGACAACC..........................................................................................................................................................................2811.001.00-1.00------------------------------------------------------
................................GAATGGGAATGGGAATGAGG......................................................................................................................................................................................................201.000.00---------1.00----------------------------------------------
...................................................................................................................................................................................................TTCAGTAGGAGCTGTGGC.....................................1811.001.00------------1.00-------------------------------------------
.....................................................GCTGGGAGAGCTTTTGAGAGGACAAC...........................................................................................................................................................................2611.001.00--1.00-----------------------------------------------------
.........................................................................................................................................................................................................................GGCCTTCCAGGAGTCTGAG..............1911.001.00--1.00-----------------------------------------------------
.......................................................................................................................................................................................................................GGGGCCTTCCAGGAGTCTGAGCTAT..........2511.001.00----------1.00---------------------------------------------
..................................................................................................................................................AGGGAGGTTAGGAGAGAGCG....................................................................................2011.001.00---------------------------------------------------1.00----
..............................................ATGCCTAGCTGGGAGAGCTTTTGAGAGGACAACCTGAACTAATAACACGATGCAGTGTGTAGTGC...........................................................................................................................................6511.001.00------------------------------------1.00-------------------
.........................................................................................................................................................................................................................GGCCTTCCAGGAGTCTGCG..............191.000.00--1.00-----------------------------------------------------
........................................................................................................................................................................................................................GGGCCTTCCAGGAGTCTGAGCTAAGA........261.000.00---------1.00----------------------------------------------
..................................................................................................................................................AGGGAGGTTAGGAGAGAG......................................................................................1811.001.00--------------------------------------------------1.00-----
...............................................................................CTGAACTAATAACACGATGCAGTG...................................................................................................................................................2411.001.00----------------------------1.00---------------------------
....................................................AGCTGGGAGAGCTTTTGAGAGGAC..............................................................................................................................................................................2411.001.00-1.00------------------------------------------------------
.......................................................................................................................................................GGTTAGGAGAGAGCGC...................................................................................1620.500.50-----------------------------------------------------0.50--
.................................................................................................................................CTGGATGTGGTTTTGGGA.......................................................................................................1820.500.50------------------------------------------------------0.50-
...ATGTCTGTGCCTCAGTTTC....................................................................................................................................................................................................................................1960.330.33--0.33-----------------------------------------------------
......................................................................................................................................................................................ACCCTGTTGGTTGTT.....................................................1560.170.17------0.17-------------------------------------------------

Antisense strand
TTAATGTCTGTGCCTCAGTTTCTCCCTTTATAGAATGGGAATGGGAATGCCTAGCTGGGAGAGCTTTTGAGAGGACAACCTGAACTAATAACACGATGCAGTGTGTAGTGCCACCAATCCCTCATCCTGCTGGATGTGGTTTTGGGAGGGAGGTTAGGAGAGAGCGCTATTCACCGTCCCTAACCCTGTTGGTTGTTCAGTAGGAGCTGTGGCGCGGGGCCTTCCAGGAGTCTGAGCTATGAGTGGCCCC
..................................................(((((.((((.......((((.(((........((((...((((......)))).))))........)))))))))))))))).....................................................................................................................
..................................................51....................................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577740(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR040023(GSM532908)
G575T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189784
.....................................................................................................GAGGGATTGGTGGCACTACACA............................................................................................................................... 2213.003.00---3.00----------------------------------------------------
....................................................................................................GGATGAGGGATTGGTGGCACTACACAC........................................................................................................................... 2711.001.00-1.00------------------------------------------------------
..............................................................................................................CCACCAATCCCTCATCCTGCTTCT.................................................................................................................... 241.000.00-------------------------------1.00------------------------
.................................................................TTTGAGAGGACAACCTGAACGCT.................................................................................................................................................................. 231.000.00---------------------------------------------1.00----------
.........................................................................................................GAGGGATTGGTGGCACTA............................................................................................................................... 1811.001.00----1.00---------------------------------------------------
............................................................................................................CAGGATGAGGGATTGGTGGCA......................................................................................................................... 2111.001.00----1.00---------------------------------------------------
......................................................................................................................................TGTGGTTTTGGGAGGGA................................................................................................... 171.000.00--------1.00-----------------------------------------------
.....................................................................................................ATGAGGGATTGGTGGCACTACACA............................................................................................................................. 2411.001.00------------------------------------------------1.00-------
......................................................................................................GAGGGATTGGTGGCACTACAC............................................................................................................................... 2111.001.00---1.00----------------------------------------------------
.................................................................................................................................................GAGGGAGGTTAGGAGAGTC...................................................................................... 191.000.00----1.00---------------------------------------------------
.................................................................................................................................................................................ACCAACAGGGTTAGGG......................................................... 1630.330.33-------------------------------------------------------0.33