ID: uc001cao.1_intron_0_0_chr1_36859755_r.5p
GENE: LSM10(1)
chr1:36863168-36863417-


(1)
AGO2.ip 		(9)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(11)
CELL-LINE 		(13)
CERVIX 		(1)
HEART 		(1)
HELA 		(2)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
UTERUS

Sense strand
GCTAGCTTCGGCGGCGACCCAGACGGGGAAAGCGGAAGGAATGTCGCGTGGTGGGTCCGGGTCGGCGGTGCAGGGAGCCCCGGGGCGGAATGCGGGGGATGCCAGGACCTCCGGAAGGAGGTGCCGGAGCCCAGGAAGCGTTTTCTTCCCCATTTACCGAGTATAGCTCCTTTCCCCAGACCCGCTCCCGCTGCTCTGAGTAAGCGGTGCTCATCCCGTTTTACCGGTAGCTTAGCTAGCTTGGAGAAGC
....................................................................((((....(((....)))....)))).(((...((.((((((((....)))))).))))..)))......................................................................................................................
...................................................................68.........................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040011(GSM532896)
G529T. (cervix)		GSM532875(GSM532875)
G547N. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040039(GSM532924)
G531T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040017(GSM532902)
G645T. (cervix)		SRR040033(GSM532918)
G603T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM532885(GSM532885)
G850N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................GGGAGCCCCGGGGCGAGT................................................................................................................................................................18152.000.00123.009.008.00-8.001.00----1.00---------------1.00-------1.00------------------
........................................................................GGGAGCCCCGGGGCGAG.................................................................................................................................................................1780.000.0060.0010.008.00------------------------1.00--------------------1.00----
........................................................................GGGAGCCCCGGGGCGAGC................................................................................................................................................................1810.000.007.002.00------1.00--------------------------------------------
........................................................................GGGAGCCCCGGGGCGAGA................................................................................................................................................................189.000.009.00----------------------------------------------------
...........CGGCGACCCAGACGGGGAAAGCGGAAGGAA.................................................................................................................................................................................................................3016.006.00---6.00-------------------------------------------------
.........................GGGAAAGCGGAAGGAATGT..............................................................................................................................................................................................................1914.004.00-------2.00----2.00----------------------------------------
........................................................................GGGAGCCCCGGGGCGAGTT...............................................................................................................................................................194.000.001.00----1.00----1.00-----------------------------1.00------------
........................................................................GGGAGCCCCGGGGCGATT................................................................................................................................................................184.000.003.001.00---------------------------------------------------
........................................................................GGGAGCCCCGGGGCGAGG................................................................................................................................................................183.000.003.00----------------------------------------------------
........................................................................GGGAGCCCCGGGGCGACT................................................................................................................................................................183.000.003.00----------------------------------------------------
..........................................................................................................................GCCGGAGCCCAGGAAGC...............................................................................................................1722.502.50------2.50----------------------------------------------
........................................................................GGGAGCCCCGGGGCGTG.................................................................................................................................................................172.000.002.00----------------------------------------------------
........................................................................GGGAGCCCCGGGGCGAT.................................................................................................................................................................172.000.002.00----------------------------------------------------
................................CGGAAGGAATGTCGCGTG........................................................................................................................................................................................................1812.002.00-------------1.00-----------------------------------1.00---
.......................CGGGGAAAGCGGAAGGAATG...............................................................................................................................................................................................................2012.002.00-----------------1.00----------1.00------------------------
....................................................................TGCAGGGAGCCCCGGGTC....................................................................................................................................................................181.000.00---------------------1.00-------------------------------
........................................ATGTCGCGTGGTGGGTCCGGG.............................................................................................................................................................................................2111.001.00--------------------------------------------1.00--------
..................................................................................................................................................................ATAGCTCCTTTCCCCAGACCC...................................................................2111.001.00-----------------------------1.00-----------------------
.................................................................................................GATGCCAGGACCTCCGGA.......................................................................................................................................1811.001.00---------------------------------------------1.00-------
....................................................................................................................................................................................CCCGCTCCCGCTGCTCCCCC..................................................201.000.00--------------1.00--------------------------------------
........................................................................GGGAGCCCCGGGGCGTC.................................................................................................................................................................171.000.001.00----------------------------------------------------
.............................................................................CCCCGGGGCGGAATGCAGCC.........................................................................................................................................................201.000.00------------------------------------------1.00----------
................ACCCAGACGGGGAAAGCGGAAGGAATGT..............................................................................................................................................................................................................2811.001.00------------------------------------1.00----------------
..............................AGCGGAAGGAATGTCGCG..........................................................................................................................................................................................................1811.001.00--------------------------------------1.00--------------
.........................................................................................................................................GCGTTTTCTTCCCCATTTA..............................................................................................1911.001.00--------------------1.00--------------------------------
.......................CGGGGAAAGCGGAAGGAATGTA.............................................................................................................................................................................................................221.000.00-----------------------------------------1.00-----------
........................................................................GGGAGCCCCGGGGCGAGTG...............................................................................................................................................................191.000.00-1.00---------------------------------------------------
........................................................................GGGAGCCCCGGGGCGAATT...............................................................................................................................................................191.000.00-----1.00-----------------------------------------------
.......................CGGGGAAAGCGGAAGGA..................................................................................................................................................................................................................1711.001.00-------------------1.00---------------------------------
........................GGGGAAAGCGGAAGGAATG...............................................................................................................................................................................................................1911.001.00-------------------------1.00---------------------------
........................GGGGAAAGCGGAAGGAATGTC.............................................................................................................................................................................................................2111.001.00---------1.00-------------------------------------------
..................................GAAGGAATGTCGCGTGCA......................................................................................................................................................................................................181.000.00-------------1.00---------------------------------------
........................................................................GGGAGCCCCGGGGCGAC.................................................................................................................................................................171.000.001.00----------------------------------------------------
........................................................................GGGAGCCCCGGGGCGTGA................................................................................................................................................................181.000.00-1.00---------------------------------------------------
........................................................................GGGAGCCCCGGGGCGTGT................................................................................................................................................................181.000.001.00----------------------------------------------------
................ACCCAGACGGGGAAAGCGGAAGGAATG...............................................................................................................................................................................................................2711.001.00---------1.00-------------------------------------------
........................................................................GGGAGCCCCGGGGCGAGAC...............................................................................................................................................................191.000.001.00----------------------------------------------------
.........................................................................................ATGCGGGGGATGCCAGGAC..............................................................................................................................................1911.001.00----------------1.00------------------------------------
.....................................................GGTCCGGGTCGGCGGACCA..................................................................................................................................................................................191.000.00---------------------------------------1.00-------------
........................................................................GGGAGCCCCGGGGCGACA................................................................................................................................................................181.000.001.00----------------------------------------------------
............................................................................................CGGGGGATGCCAGGAAA.............................................................................................................................................171.000.00--------------------------------1.00--------------------
............................................CGCGTGGTGGGTCCGGGGGT..........................................................................................................................................................................................201.000.00------------------1.00----------------------------------
................................................................................................................................................................................CAGACCCGCTCCCGCGCGC.......................................................191.000.00-------------------------------------1.00---------------
........................................................................GGGAGCCCCGGGGCGGCG................................................................................................................................................................181.000.001.00----------------------------------------------------
.......................CGGGGAAAGCGGAAGGAAT................................................................................................................................................................................................................1911.001.00-------------------------------------------1.00---------
...AGCTTCGGCGGCGACCCAGA...................................................................................................................................................................................................................................2011.001.00--------------------------------------------------1.00--
......TTCGGCGGCGACCCAGAC..................................................................................................................................................................................................................................1811.001.00---------------1.00-------------------------------------
........................................................................GGGAGCCCCGGGGCGTGC................................................................................................................................................................181.000.001.00----------------------------------------------------
.................................................................................................................................................................................................................CTCATCCCGTTTTACACGA......................191.000.00------------------------------1.00----------------------
........................................................................GGGAGCCCCGGGGCGAGCT...............................................................................................................................................................191.000.001.00----------------------------------------------------
........................GGGGAAAGCGGAAGGAATGTCG............................................................................................................................................................................................................2211.001.00-----------------------1.00-----------------------------
....................................................................TGCAGGGAGCCCCGGGG.....................................................................................................................................................................1720.500.50---------------------------------------------------0.50-
.......................................................................AGGGAGCCCCGGGGCG...................................................................................................................................................................1630.330.33----------------------------------------------------0.33

Antisense strand
GCTAGCTTCGGCGGCGACCCAGACGGGGAAAGCGGAAGGAATGTCGCGTGGTGGGTCCGGGTCGGCGGTGCAGGGAGCCCCGGGGCGGAATGCGGGGGATGCCAGGACCTCCGGAAGGAGGTGCCGGAGCCCAGGAAGCGTTTTCTTCCCCATTTACCGAGTATAGCTCCTTTCCCCAGACCCGCTCCCGCTGCTCTGAGTAAGCGGTGCTCATCCCGTTTTACCGGTAGCTTAGCTAGCTTGGAGAAGC
....................................................................((((....(((....)))....)))).(((...((.((((((((....)))))).))))..)))......................................................................................................................
...................................................................68.........................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormGSM532876(GSM532876)
G547T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040011(GSM532896)
G529T. (cervix)		GSM532875(GSM532875)
G547N. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040039(GSM532924)
G531T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040017(GSM532902)
G645T. (cervix)		SRR040033(GSM532918)
G603T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM532885(GSM532885)
G850N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................CCCGGACCCACCACGCGA............................................................................................................................................................................................. 1812.002.00-----------2.00-----------------------------------------
.....................................................................................................................................................AGCTATACTCGGTAAATGG.................................................................................. 1912.002.00---2.00-------------------------------------------------
...................................................TGCACCGCCGACCCGGACCCA.................................................................................................................................................................................. 2111.001.00------------------------1.00----------------------------
............GGCGACCCAGACGGGA.............................................................................................................................................................................................................................. 161.000.00-----------------------------------1.00-----------------
..................................................ACCGCCGACCCGGACCCAC..................................................................................................................................................................................... 1911.001.00-------------------------------1.00---------------------
...............................................................................................................................................................TCTGGGGAAAGGAGCTATACT...................................................................... 2111.001.00---------------------------------1.00-------------------
..........................................................................................................................................GTAAATGGGGAAGAAAACG............................................................................................. 1911.001.00----------------------------------------------1.00------
............CCCGTCTGGGTCGCC............................................................................................................................................................................................................................... 1511.001.00-----------------------------------------------1.00-----
....................................................................................................................GGAGGTGCCGGAGCCACCA................................................................................................................... 191.000.00--------1.00--------------------------------------------
........................................................................................................................................................TTTACCGAGTATAGCTGGG............................................................................... 191.000.00---1.00-------------------------------------------------
................................................................................................GGATGCCAGGACCTCCTGT....................................................................................................................................... 191.000.00----------------------1.00------------------------------