ID: uc001bzz.2_intron_13_0_chr1_36645159_f
GENE: (14)
chr1:36645109-36645316+


(5)
B-CELL 		(5)
BRAIN 		(3)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(5)
HEART 		(6)
LIVER 		(2)
OTHER 		(14)
SKIN 		(1)
XRN.ip

Sense strand
AAAGCAGAAGCAGGACAGCAAGGAGGCCAACGCCAACGGTTCCAGCCCAGGTAAAGCCCCCATTCCTCTCGCCTCCCTTCCCTTTGCCATCCTCCTCCTCCTCCATCCTCACCTCTCTTGCCAGCCCCTGGCTGATGGCCCCTCTTTCCCTGTGACAGAGCCTGTGAAAGCTGTGGAGGCTCGGTCCCCAGGGCTGCAGAAGGAGGCT
.....................................................................................((((((............................(((((...))))).)))))).....................................................................
........................................................................73............................................................................151.......................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR343334SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040010(GSM532895)
G529N. (cervix)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................TTCCCTTTGCCATCCTATG................................................................................................................19161.000.00110.0035.00--9.00---1.00------2.00--2.00-----------------------------1.00---------1.00-------
.............................................................................TTCCCTTTGCCATCCTTCGC...............................................................................................................207.000.00---------1.00-------2.00--------------------1.00---1.00----------1.00--1.00---------
........AGCAGGACAGCAAGGATTT.....................................................................................................................................................................................196.000.00--2.001.00------3.00-------------------------------------------------------
.....AGAAGCAGGACAGCAAGGAGGC.....................................................................................................................................................................................2216.006.00------6.00-----------------------------------------------------------
........AGCAGGACAGCAAGGACAGT....................................................................................................................................................................................205.000.00--1.003.00-1.00------------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTAT.................................................................................................................184.000.003.00-------1.00---------------------------------------------------------
........AGCAGGACAGCAAGGCCA......................................................................................................................................................................................183.000.00---1.00-2.00------------------------------------------------------------
...........AGGACAGCAAGGAGGCCAACGCCAAC...........................................................................................................................................................................2613.003.00-------3.00----------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTTCG................................................................................................................193.000.00---------1.00---------2.00----------------------------------------------
..................................................................................................................................................................TGTGAAAGCTGTGGAGGCTCGG........................2212.002.00----------------2.00-------------------------------------------------
.........GCAGGACAGCAAGGACCA.....................................................................................................................................................................................182.000.00---2.00--------------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTATC................................................................................................................192.000.00-2.00----------------------------------------------------------------
........AGCAGGACAGCAAGGACCG.....................................................................................................................................................................................192.000.00--2.00---------------------------------------------------------------
.........GCAGGACAGCAAGGACCG.....................................................................................................................................................................................182.000.00--1.00---------------------------------------------------------1.00-----
........AGCAGGACAGCAAGGATTTT....................................................................................................................................................................................202.000.00-----2.00------------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTACG................................................................................................................192.000.001.00-------1.00---------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTATGC...............................................................................................................202.000.00--------------1.00----------------------------------------------1.00----
........AGCAGGACAGCAAGGACC......................................................................................................................................................................................182.000.00---1.00-------1.00------------------------------------------------------
..............................................................TTCCTCTCGCCTCCCCCT................................................................................................................................181.000.001.00-----------------------------------------------------------------
.....................................GGTTCCAGCCCAGGTCGAG........................................................................................................................................................191.000.00------------------------------------1.00-----------------------------
............................................................................CTTCCCTTTGCCATCCTATGC...............................................................................................................211.000.00----------------------------------------1.00-------------------------
........AGCAGGACAGCAAGGTTT......................................................................................................................................................................................181.000.00---1.00--------------------------------------------------------------
...........................................................................................................................................................CAGAGCCTGTGAAAGCTGTGGAGGCT...........................2611.001.00-------------------------------------------1.00----------------------
.........GCAGGACAGCAAGGACCCC....................................................................................................................................................................................191.000.00------------------------------------------------------1.00-----------
.............................................................................TTCCCTTTGCCATCCTATT................................................................................................................191.000.001.00-----------------------------------------------------------------
......GAAGCAGGACAGCAAGGAGGCCAA..................................................................................................................................................................................2411.001.00--------------------1.00---------------------------------------------
.............................................................................TTCCCTTTGCCATCCGATG................................................................................................................191.000.001.00-----------------------------------------------------------------
........AGCAGGACAGCAAGGACAA.....................................................................................................................................................................................191.000.00--1.00---------------------------------------------------------------
........AGCAGGACAGCAAGGACAC.....................................................................................................................................................................................191.000.00--1.00---------------------------------------------------------------
............................AACGCCAACGGTTCCAGCCCAGAGCC..........................................................................................................................................................261.000.00----------------------1.00-------------------------------------------
........AGCAGGACAGCAAGGACATC....................................................................................................................................................................................201.000.00------------1.00-----------------------------------------------------
.........................................................................................................................................................................................CCCCAGGGCTGCAGAAGGAG...2011.001.00---------------------1.00--------------------------------------------
.......AAGCAGGACAGCAAGGAGTGCT...................................................................................................................................................................................221.000.00---------------------------------------------------1.00--------------
........AGCAGGACAGCAAGGAAAGT....................................................................................................................................................................................201.000.00--------------------1.00---------------------------------------------
........................................................................................................................................................................................TCCCCAGGGCTGCAGAAGGAGGA.2311.001.00---------------------------------------------------------1.00--------
......................................................................................................................................................................AAAGCTGTGGAGGCTCGGTCC.....................2111.001.00----------------------------1.00-------------------------------------
.............................................................................TTCCCTTTGCCATCCGACG................................................................................................................191.000.001.00-----------------------------------------------------------------
.....AGAAGCAGGACAGCAGATA........................................................................................................................................................................................191.000.00-----------------------------------------------------------1.00------
..............ACAGCAAGGAGGCCAACGC...............................................................................................................................................................................1911.001.00------------1.00-----------------------------------------------------
.......AAGCAGGACAGCAAGGACAA.....................................................................................................................................................................................2031.000.33-----1.00------------------------------------------------------------
...............................................................................................................................CTGGCTGATGGCCCCTCTTT.............................................................2011.001.00-----------------------------------1.00------------------------------
........AGCAGGACAGCAAGGATG......................................................................................................................................................................................181.000.00--1.00---------------------------------------------------------------
............................................................................................................................................................AGAGCCTGTGAAAGCTGTGGAGGCT...........................2511.001.00-------------------------------1.00----------------------------------
.AAGCAGAAGCAGGACGCT.............................................................................................................................................................................................181.000.00--------------------------1.00---------------------------------------
.......................................................................................................................................................................................GTCCCCAGGGCTGCAGAAGGAGGCT2511.001.00----------------------------------------------------1.00-------------
.........GCAGGACAGCAAGGACAGA....................................................................................................................................................................................191.000.00--1.00---------------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTCTGC...............................................................................................................201.000.00------------------------------1.00-----------------------------------
...........................................................................................................................................................................................CCAGGGCTGCAGAAGGAGG..1911.001.00--------------------------------------------1.00---------------------
........AGCAGGACAGCAAGGATA......................................................................................................................................................................................181.000.00--1.00---------------------------------------------------------------
.................................................................................................................................................TTCCCTGTGACAGAGCCTGA...........................................201.000.00-----------------------------------------------1.00------------------
.............................................................................TTCCCTTTGCCATCCTATA................................................................................................................191.000.00-1.00----------------------------------------------------------------
...................................................................................................................................................................................CTCGGTCCCCAGGGCTGCAG.........2011.001.00---------------------------------------------1.00--------------------
........AGCAGGACAGCAAGGATTA.....................................................................................................................................................................................191.000.00---1.00--------------------------------------------------------------
............................................................................CTTCCCTTTGCCATCCTATG................................................................................................................201.000.001.00-----------------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTATGA...............................................................................................................201.000.00-----------------------------------------1.00------------------------
..................................................................................................................................................................TGTGAAAGCTGTGGAGGCT...........................1911.001.00--------------------------------------------------1.00---------------
.......................................................................................................................................................................................GTCCCCAGGGCTGCAGAA.......1811.001.00-----------------------1.00------------------------------------------
.............................................................................................................................................................................................AGGGCTGCAGAAGGAGGCTGTT221.000.00---------------------------------1.00--------------------------------
..............................................................................TCCCTTTGCCATCCTATG................................................................................................................181.000.001.00-----------------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTTTG................................................................................................................191.000.00---------1.00--------------------------------------------------------
.............................................................................TTCCCTTTGCCATCCTCTGCC..............................................................................................................211.000.00---------------------1.00--------------------------------------------
........AGCAGGACAGCAAGGACAAA....................................................................................................................................................................................201.000.00--1.00---------------------------------------------------------------
..................................................................................................................................................................TGTGAAAGCTGTGGAGGCTCGGTCCCCAGGGC..............3211.001.00-------------------------1.00----------------------------------------
........AGCAGGACAGCAAGGTCA......................................................................................................................................................................................181.000.00-----1.00------------------------------------------------------------
...........AGGACAGCAAGGAGGCCAACGCCA.............................................................................................................................................................................2411.001.00-------1.00----------------------------------------------------------
........AGCAGGACAGCAAGGACG......................................................................................................................................................................................181.000.00-----------1.00------------------------------------------------------
........................................................................................................................................................................................TCCCCAGGGCTGCAGAAGGAGG..2211.001.00--------------------------------1.00---------------------------------
............................................................................................................................................................................................CAGGGCTGCAGAAGGAGG..1830.670.67-----------------------0.33-0.33----------------------------------------
............................................................................................................................................................................................CAGGGCTGCAGAAGGAGGC.1920.500.50--------------------------------------------------------------0.50---
..................................AACGGTTCCAGCCCA...............................................................................................................................................................1520.500.50---------------------------------------------------------------0.50--
.......AAGCAGGACAGCAAGGA........................................................................................................................................................................................1730.330.33----------------------0.33-------------------------------------------
.........................................................................................................................................................................................CCCCAGGGCTGCAGAA.......1690.110.11-----------------------------------------------------------------0.11

Antisense strand
AAAGCAGAAGCAGGACAGCAAGGAGGCCAACGCCAACGGTTCCAGCCCAGGTAAAGCCCCCATTCCTCTCGCCTCCCTTCCCTTTGCCATCCTCCTCCTCCTCCATCCTCACCTCTCTTGCCAGCCCCTGGCTGATGGCCCCTCTTTCCCTGTGACAGAGCCTGTGAAAGCTGTGGAGGCTCGGTCCCCAGGGCTGCAGAAGGAGGCT
.....................................................................................((((((............................(((((...))))).)))))).....................................................................
........................................................................73............................................................................151.......................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR343334SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040010(GSM532895)
G529N. (cervix)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................GGAGGAGGAGGAGGATG........................................................................................................ 1704.004.00-----------------------------1.00----1.00--1.00--------1.00-------------------
...........................................................................CCTTCCCTTTGCCATAAT................................................................................................................... 181.000.00-------------1.00----------------------------------------------------
..........................................................................CCCTTCCCTTTGCCATCCTCG................................................................................................................. 211.000.00------------------------1.00-----------------------------------------
............................................................................................TCCTCCTCCTCCATCCTGA................................................................................................. 191.000.00--------------1.00---------------------------------------------------
................................................................................................CCTCCTCCATCCTCATC............................................................................................... 171.000.00-------------------------------------------------------1.00----------
.....................................................................................GCCATCCTCCTCCTCCTCCACT..................................................................................................... 221.000.00-------------1.00----------------------------------------------------
......................................................................................TGGAGGAGGAGGAGGATGG....................................................................................................... 1941.001.00---------------------------0.75------------------------------------0.25-
.................................................................................................................................................................................GGCTCGGTCCCCAGGGAGC............ 191.000.00---------------------------------------1.00--------------------------
........................................................................................ATGGAGGAGGAGGAGGAT...................................................................................................... 1850.600.60--------------------------0.200.40--------------------------------------
.......................................................................................ATGGAGGAGGAGGAGGATG...................................................................................................... 1930.330.33------------------------0.33-----------------------------------------
......................................................................CAAAGGGAAGGGAGGC.......................................................................................................................... 1670.140.14----------------------------0.14-------------------------------------