ID: uc001bvx.1_intron_3_0_chr1_33246747_r.3p
GENE: YARS(1)
chr1:33246697-33246946-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(7)
BREAST 		(5)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(1)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(1)
OTHER 		(11)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
GAGGGAGAGAACAGATGAAAATCAGGTATGTCATGTCTGAAAGGTTGCCAACCCAGTATTAAAGAAGTTACAACTCAGTGTTTAGACTCTGGGGATTCTACACTAAATCTTACCTAATCTCAGTGTCTTAACGTGGTGGGATCAGCAGCTGACCTGCCACAGGGAAGAATTCTACCTCATGGGGTTCTTCTCATTCCCAGAGCCAATGGCCAAAGGCCCTGCCAAGAATTCAGAACCAGAGGAGGTCATC
.........................................................................(((((.((....)).))))).............................................................................................................................................................
....................................................................69....................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
.........................................................................CTCAGTGTTTAGACTATCT..............................................................................................................................................................191132.000.00482.00282.00214.00142.003.00-----1.00-2.00-1.00------1.00-1.001.00------1.00-------------1.00---
.........................................................................CTCAGTGTTTAGACTATC...............................................................................................................................................................18961.000.00397.00209.00209.00143.00---------1.00---1.00-----------------1.00-------------
.........................................................................CTCAGTGTTTAGACTAT................................................................................................................................................................1743.000.0029.004.007.002.00----------1.00----------------------------------
.........................................................................CTCAGTGTTTAGACTATT...............................................................................................................................................................184.000.003.001.00-----------------------------------------------
...........................................................................................................................................................................................................................TGCCAAGAATTCAGAACCAGAGGAGGTC...2814.004.00------3.001.00-----------------------------------------
.........................................................................CTCAGTGTTTAGACTACCT..............................................................................................................................................................193.000.001.00-1.001.00---------------------------------------------
.........................................................................CTCAGTGTTTAGACTATTT..............................................................................................................................................................193.000.00-2.00-1.00---------------------------------------------
.........................................................................CTCAGTGTTTAGACTATGT..............................................................................................................................................................192.000.00--2.00----------------------------------------------
..............................................................................................................................................................................................................................CAAGAATTCAGAACCAGAG.........1912.002.00---------------2.00---------------------------------
.........................................................................CTCAGTGTTTAGACTATA...............................................................................................................................................................182.000.00--1.00----------1.00-----------------------------------
...............................................................................................................................................................................................................................AAGAATTCAGAACCAGAGGA.......2012.002.00--------1.00---------------------------------1.00------
.........................................................................CTCAGTGTTTAGACTACTT..............................................................................................................................................................192.000.00-2.00-----------------------------------------------
.........................................................................CTCAGTGTTTAGACTATCA..............................................................................................................................................................192.000.00--2.00----------------------------------------------
..............................................................................................................................................................................................................................CAAGAATTCAGAACCAGAGGAGGCG...251.000.00----------------------------1.00--------------------
....................................................................................................CACTAAATCTTACCTTATG...................................................................................................................................191.000.00----------------1.00--------------------------------
...............................................................................................................................................................................................................................AAGAATTCAGAACCAGAGGAGGTCA..2511.001.00-----------------------------1.00-------------------
.............................................................................................................................................................................................................................CCAAGAATTCAGAACCAGAGGAG......2311.001.00-------------------------------------------1.00-----
...........................................................................CAGTGTTTAGACTCTCT..............................................................................................................................................................171.000.001.00------------------------------------------------
............................................................................................................................................................................................................................GCCAAGAATTCAGAACCAGAGGAGGTCATC3011.001.00-------1.00-----------------------------------------
...............................................................................................................................................................................................................................AAGAATTCAGAACCAGAGGAGGAA...241.000.00-----------1.00-------------------------------------
..............................................................................................................................................................................................................................CAAGAATTCAGAACCAGAGGAGGT....2411.001.00------------------1.00------------------------------
.........................................................................CTCAGTGTTTAGACTGTT...............................................................................................................................................................181.000.00------------------------------1.00------------------
...............................................................................................................................................................................................................................AAGAATTCAGAACCAGAGGAGGTCATA271.000.00--------------------------------------1.00----------
...........................................................................CAGTGTTTAGACTCTGT..............................................................................................................................................................171.000.00-------------------------1.00-----------------------
...................................................................................................................................................................................................................................ATTCAGAACCAGAGGAGGTCATCA241.000.00-----------------------------------------1.00-------
.................................................................................................................................AACGTGGTGGGATCAGCAGCTGA..................................................................................................2311.001.00-----------1.00-------------------------------------
.........................................................................CTCAGTGTTTAGACTACC...............................................................................................................................................................181.000.00-1.00-----------------------------------------------
.........................................................................CTCAGTGTTTAGACTGTC...............................................................................................................................................................181.000.001.00------------------------------------------------
..........................................................................................................................................................................................................................CTGCCAAGAATTCAGAACCAGAGGAG......2611.001.00--------1.00----------------------------------------
.......................................................................................................................................................................................GTTCTTCTCATTCCCAGAGCCAATGGC........................................2711.001.00-------------------1.00-----------------------------
............................................................................AGTGTTTAGACTCTGGGGATTCT.......................................................................................................................................................2311.001.00--------------------1.00----------------------------
.........................................................................CTCAGTGTTTAGACTGTCT..............................................................................................................................................................191.000.001.00------------------------------------------------
........................................................................................................................................................................................................................CCCTGCCAAGAATTCAGAACCAGAGGAGGT....3011.001.00-----1.00-------------------------------------------
.........................................................................................................................................................................................................................CCTGCCAAGAATTCAGAACCAGAGGAGGTC...3011.001.00---------------------------------1.00---------------
............................................................................................................................................................................................................................GCCAAGAATTCAGAACCAGAGGA.......2311.001.00-------1.00-----------------------------------------
....................................................................................................................................................................................................................................TTCAGAACCAGAGGAGGTAAA.211.000.00----------------------------------1.00--------------
................................................................................................................................................................................................................................AGAATTCAGAACCAGAGGAGG.....2111.001.00-------------------------------------1.00-----------
.......................................................................................................................................................................................................................GCCCTGCCAAGAATTCAGAACCAGAGGAGGTCA..3311.001.00-----1.00-------------------------------------------
.....................................................................................................ACTAAATCTTACCTATTTA..................................................................................................................................191.000.00----------------------------------------------1.00--
...........................................................................CAGTGTTTAGACTCTCTGT............................................................................................................................................................191.000.00----------1.00--------------------------------------
...............................................................................................................................................................................................................................AAGAATTCAGAACCAGAGG........1911.001.00--------------------------------1.00----------------
.........................................................................CTCAGTGTTTAGACTATCC..............................................................................................................................................................191.000.001.00------------------------------------------------
...........................................................................CAGTGTTTAGACTCTGTTC............................................................................................................................................................191.000.00---------------------------1.00---------------------
..............................................................................................................................................................................................................................CAAGAATTCAGAACCAGAGGAGGA....241.000.00------------------------------------1.00------------
....................................................................................................................................................................................................................AAGGCCCTGCCAAGAATTCAGAACC.............2511.001.00--------1.00----------------------------------------
.........................................................................CTCAGTGTTTAGACTCT................................................................................................................................................................1731.001.00--1.00----------------------------------------------
...........................................................................................................................................................................................................................TGCCAAGAATTCAGAACCAGAGGAGGT....2711.001.00------1.00------------------------------------------
............................................................................................................................................................................................................................GCCAAGAATTCAGAACCAGAGG........2211.001.00----------------------------------------1.00--------
.........................................................................................................................................................................................................................CCTGCCAAGAATTCAGAACCAGAGG........2511.001.00--------------------------------------------1.00----
.........................................................................CTCAGTGTTTAGACTCTC...............................................................................................................................................................1830.331.000.33------------------------------------------------
.........................................................................CTCAGTGTTTAGACTC.................................................................................................................................................................1630.330.33-----------------------------------------------0.33-

Antisense strand
GAGGGAGAGAACAGATGAAAATCAGGTATGTCATGTCTGAAAGGTTGCCAACCCAGTATTAAAGAAGTTACAACTCAGTGTTTAGACTCTGGGGATTCTACACTAAATCTTACCTAATCTCAGTGTCTTAACGTGGTGGGATCAGCAGCTGACCTGCCACAGGGAAGAATTCTACCTCATGGGGTTCTTCTCATTCCCAGAGCCAATGGCCAAAGGCCCTGCCAAGAATTCAGAACCAGAGGAGGTCATC
.........................................................................(((((.((....)).))))).............................................................................................................................................................
....................................................................69....................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSE20417(GSM514985)
Colon and lung cancer pool. 		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
...............................................................................................................................................................CAGGGAAGAATTCTACC.......................................................................... 173.000.00---------2.00----------------1.00----------------------
.................................................................................................................................................CAGCTGACCTGCCACTGG....................................................................................... 181.000.00-----1.00-------------------------------------------
.................................................................................................................................................................GGGAAGAATTCTACCGGC....................................................................... 181.000.00----------------------1.00--------------------------
..........................................................................................................................................GCAGGTCAGCTGCTGATCC............................................................................................. 1911.001.00----1.00--------------------------------------------
..................................................................GTTACAACTCAGTGTGG....................................................................................................................................................................... 171.000.00---1.00---------------------------------------------
.....................................................................................................................................................................AGAATTCTACCTCATGGG................................................................... 181.000.00---------------------------------------1.00---------
..............................................................AGAAGTTACAACTCAGTGGAG....................................................................................................................................................................... 211.000.00-----1.00-------------------------------------------
..TTCATCTGTTCTCTCCC....................................................................................................................................................................................................................................... 1750.200.20------------------------------------------------0.20