ID: uc001bvm.2_intron_3_0_chr1_33060825_f.3p
GENE: (4)
chr1:33065669-33065918+


(1)
AGO1.ip
(1)
AGO2.ip
(3)
BREAST
(6)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(4)
HEART
(1)
HELA
(1)
KIDNEY
(1)
OTHER
(22)
SKIN
(1)
TESTES

Sense strand
TATTTAAATCTCTACACAGATTCACCAGGCATGTAAACTCATCTGCAGAAAATGTAAACGTCATGTGACAGATCTAACAGGGCAAGTGGTACAGGAGGGAACCAGGCGCTACAGACTGTGTAATGAGTGTCTTGCAGAATTTGGCATAGACAGCCTCCCCATTGACTTGGAAGCTGAACAACATCTTATGTCCCCATCAGATGGAGATAAGGATTCCAGATGGCACTTGAGTGAAGATGAGAATAGATCC
.............................................................................................(((((.......((((........))))......((((((((........))).))))).)))))(((......)))................................................................................
...........................................................................................92..............................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
................................................................................................GGGAACCAGGCGCTAAAC........................................................................................................................................1854.000.007.008.00-4.00-4.00-1.003.003.002.002.002.00-1.001.00-1.001.001.00--1.001.001.00--1.00-1.001.001.00-1.001.00-1.00-1.001.001.00-
................................................................................................................................................................ATTGACTTGGAAGCTGAACAACAT..................................................................2414.004.00----4.00-------------------------------------
................................................................................................................................................................................................................................ACTTGAGTGAAGATGAG.........1723.003.00--3.00---------------------------------------
..................................................................................................................................................................TGACTTGGAAGCTGAACA......................................................................1813.003.00--3.00---------------------------------------
...............................................................................................................................................................................................................TAAGGATTCCAGATGGCACTCGAG...................242.000.00------2.00-----------------------------------
..................................................................................................................................................................TGACTTGGAAGCTGAAC.......................................................................1712.002.002.00-----------------------------------------
.................................................................TGACAGATCTAACAGGGCAAG....................................................................................................................................................................2111.001.00-------------------------------------1.00----
...............................................................................................................................................................CATTGACTTGGAAGCAGA.........................................................................181.000.00--------------------------1.00---------------
................................................................................................GGGAACCAGGCGCTAAACC.......................................................................................................................................191.000.00----------------1.00-------------------------
.............................CATGTAAACTCATCTGCAGAAAATGT...................................................................................................................................................................................................2611.001.00-------1.00----------------------------------
...........................................................................................................................TGAGTGTCTTGCAGAATTTGGCATAGA....................................................................................................2711.001.00--------------------------------1.00---------
..................................................................................................................................................................TGACTTGGAAGCTGAACAACATC.................................................................2311.001.00--------------------1.00---------------------
................................................................................................GGGAACCAGGCGCTAAAA........................................................................................................................................181.000.00-------------1.00----------------------------
......................................................................................................................................................CAGCCTCCCCATTGACTTGGATG.............................................................................231.000.00-------1.00----------------------------------
................................................................................................GGGAACCAGGCGCTAAAT........................................................................................................................................181.000.00-------------1.00----------------------------
.......................................................................ATCTAACAGGGCAAGTGGTAC..............................................................................................................................................................2111.001.00---1.00--------------------------------------
.................................TAAACTCATCTGCAGAAAA......................................................................................................................................................................................................1911.001.00-----------------------------------1.00------
................................................................................................GGGAACCAGGCGCTACAC........................................................................................................................................181.000.001.00-----------------------------------------
................................................................................................................................................................................................................................ACTTGAGTGAAGATGCG.........171.000.00--1.00---------------------------------------
........TCTCTACACAGATTCGATC...............................................................................................................................................................................................................................191.000.00-------------------------1.00----------------
....................................................................................................................................................................................................................ATTCCAGATGGCACTTGAGTGAAGAC............261.000.00------1.00-----------------------------------
...........................................................................................CAGGAGGGAACCAGGCGC.............................................................................................................................................1820.500.50-----------------------------------------0.50

Antisense strand
TATTTAAATCTCTACACAGATTCACCAGGCATGTAAACTCATCTGCAGAAAATGTAAACGTCATGTGACAGATCTAACAGGGCAAGTGGTACAGGAGGGAACCAGGCGCTACAGACTGTGTAATGAGTGTCTTGCAGAATTTGGCATAGACAGCCTCCCCATTGACTTGGAAGCTGAACAACATCTTATGTCCCCATCAGATGGAGATAAGGATTCCAGATGGCACTTGAGTGAAGATGAGAATAGATCC
.............................................................................................(((((.......((((........))))......((((((((........))).))))).)))))(((......)))................................................................................
...........................................................................................92..............................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
...............................................GAAAATGTAAACGTCATGTGAAAA................................................................................................................................................................................... 241.000.00----------------------------1.00-------------
..................................................................................................................CAAATTCTGCAAGACACTCATTACACAGT........................................................................................................... 2911.001.00---------------------1.00--------------------