ID: uc001bui.2_intron_4_0_chr1_32653726_f.3p
GENE: (5)
chr1:32655456-32655705+


(1)
B-CELL
(3)
BREAST
(5)
CELL-LINE
(3)
CERVIX
(1)
HELA
(1)
LIVER
(3)
OTHER
(17)
SKIN
(1)
XRN.ip

Sense strand
TCTAGGGGGAGAATCTCACTTGATGTCACCTGATATACAGAGGGGCCCATTGGAACCCGCATTGCACAACATCCTGGAGTCTGGCTACTCCACGCTTTGGGAGCAGGGAGGGCTGTTGGCAGAGACCATCTGTGGACTAGCTGGGGGACCCTTGTGAGGTAGCAGTGGATGATGGCTCTCGGGCTGACTTCTTTGCCCAGGAAGAAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAGAAGCGCAAGGAGGT
..............................................................................................(((((....)))))......((..((.((((((((((((..(((.((.(((....))).))..))).)))......))))).))))..))..))..............................................................
..............................................................................................95.............................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR343334SRR343335SRR343336SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................TGATGGCTCTCGGGCTG................................................................17142.0042.0018.0019.003.00-2.00-----------------------------------
.........................................................................................................................................................................TGATGGCTCTCGGGCTGTTG.............................................................20121.0042.007.009.003.00-2.00-----------------------------------
.........................................................................................................................................................................TGATGGCTCTCGGGCTGTTGA............................................................2115.0042.005.00---------------------------------------
............................................................................................................................................................................................................AAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAG..............3213.003.00---3.00------------------------------------
..........................................................................................................................................................................GATGGCTCTCGGGCTGTTG.............................................................192.000.001.00-1.00-------------------------------------
..............................................................................................................................................................................................................................GGGAGGAGGAGGAGAAGCGC........2011.001.00-------1.00--------------------------------
..................................................................................................................................................................................................................................GGAGGAGGAGAAGCGTA.......171.000.00---------------------------1.00------------
....................................................................................................................................................CCCTTGTGAGGTAGCAGTGGATGATGGC..........................................................................2811.001.00-------------1.00--------------------------
..........................................................................................................................................................................................................AGAAGGTGTGCAGCGGGCCCGGGAGGAGG...................2911.001.00---1.00------------------------------------
...................................................................................................GGAGCAGGGAGGGCTGTTG....................................................................................................................................1911.001.00--------------------------1.00-------------
......................................................................................................................GCAGAGACCATCTGTGGACTAGCTGGGGGACCC...................................................................................................3311.001.00-----1.00----------------------------------
...............................................................................................................................................................TAGCAGTGGATGATGGTTT........................................................................191.000.00-------------------------1.00--------------
.........................................................................................................................................................................TGATGGCTCTCGGGCTGA...............................................................1811.001.00----1.00-----------------------------------
............................................................................................................................................................AGGTAGCAGTGGATGATG............................................................................1811.001.00-----------------------------1.00----------
.......................................................................................................CAGGGAGGGCTGTTGGCTCTG..............................................................................................................................211.000.00----------------------------1.00-----------
..........................................................................................................................................................TGAGGTAGCAGTGGATAGTT............................................................................201.000.00------------------------1.00---------------
......................................................................................................................................................................................................AGGAAGAAGGTGTGCCTTT.................................191.000.00------1.00---------------------------------
......................................................................................................................................................................................................AGGAAGAAGGTGTGCCTT..................................181.000.00------1.00---------------------------------
....................................................................................CTACTCCACGCTTTGGGAGCAGGGAGGG..........................................................................................................................................2811.001.00--------------1.00-------------------------
...........................................................................................................................................................................ATGGCTCTCGGGCTGTTG.............................................................181.000.001.00---------------------------------------
...........................................................................................................GAGGGCTGTTGGCAGAGACCAT.........................................................................................................................2211.001.00------------------1.00---------------------
.........................................................................................................................................................................TGATGGCTCTCGGGCTGCTG.............................................................2011.0042.001.00---------------------------------------
..................................................................................................................................................................................................................................GGAGGAGGAGAAGCGCAAGG....2011.001.00----------------------1.00-----------------
.........................................................................................CCACGCTTTGGGAGCAGGGAGGGC.........................................................................................................................................2411.001.00---------------1.00------------------------
.............................................................................................................................................................................................................................CGGGAGGAGGAGGAGAAGC..........1911.001.00-----------------------1.00----------------
............................................................................................................................................................................................................AAGGTGTGCAGCGGGCCCGGGAGGAGGAGG................3011.001.00---1.00------------------------------------
................................................................................................................................................GGGACCCTTGTGAGGAGAA.......................................................................................191.000.00-------------------1.00--------------------
..............................................................................................CTTTGGGAGCAGGGAGGGCTGTTG....................................................................................................................................2411.001.00------------1.00---------------------------
.............................................................................................................................................................................................................AGGTGTGCAGCGGGCCCGGGAGGAGGAGG................2911.001.00-----1.00----------------------------------
............................CCTGATATACAGAGGGGCCCATTGG.....................................................................................................................................................................................................2511.001.00-----------------1.00----------------------
.........................................................................................................GGGAGGGCTGTTGGCC.................................................................................................................................161.000.00------------------------------1.00---------
.........................................................................................................................................................GTGAGGTAGCAGTGGAAAAG.............................................................................201.000.00----------------1.00-----------------------
.........................................................................................................................................................................................................AAGAAGGTGTGCAGCGGG...............................1811.001.00-----------1.00----------------------------
................................................................................................................................................................AGCAGTGGATGATGGCTCTCGGGCTGAC..............................................................2811.001.00---1.00------------------------------------
..............................................................................................................................................................................................................................GGGAGGAGGAGGAGAAGCG.........1930.670.67--------------------------------0.67-------
.......................................................................................................................................................................................CTGACTTCTTTGCCCAG..................................................1720.500.50-----------------------------------0.50----
.....................................................................................................................................................................................................................AGCGGGCCCGGGAGGAG....................1720.500.50---------------------------------0.50------
....................................................................ACATCCTGGAGTCTGG......................................................................................................................................................................1620.500.50-------------------------------0.50--------
........................................................................................................AGGGAGGGCTGTTGGCAGA...............................................................................................................................1920.500.50----------------------------------0.50-----
......................................................................................................................................................................................................................GCGGGCCCGGGAGGAG....................1670.430.43------------------------------------0.290.14--
.......................................................................................................................................................................................................................CGGGCCCGGGAGGAGG...................1660.170.17--------------------------------------0.17-
..................................................................................................................................TGTGGACTAGCTGGG.........................................................................................................1580.120.12---------------------------------------0.12

Antisense strand
TCTAGGGGGAGAATCTCACTTGATGTCACCTGATATACAGAGGGGCCCATTGGAACCCGCATTGCACAACATCCTGGAGTCTGGCTACTCCACGCTTTGGGAGCAGGGAGGGCTGTTGGCAGAGACCATCTGTGGACTAGCTGGGGGACCCTTGTGAGGTAGCAGTGGATGATGGCTCTCGGGCTGACTTCTTTGCCCAGGAAGAAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAGAAGCGCAAGGAGGT
..............................................................................................(((((....)))))......((..((.((((((((((((..(((.((.(((....))).))..))).)))......))))).))))..))..))..............................................................
..............................................................................................95.............................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR343334SRR343335SRR343336SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343337SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040039(GSM532924)
G531T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................................................GACTTCTTTGCCCAGTGG............................................... 181.000.00---------1.00------------------------------
..................................................................................................................................................................................TCGGGCTGACTTCTTATGC..................................................... 191.000.00---------------------1.00------------------
................................................................................................................................................................................................TTGCCCAGGAAGAAGGCTG....................................... 191.000.00----------1.00-----------------------------
............................................................................................................................................................................................................................CCGGGAGGAGGAGGAAGGG........... 191.000.00--------------------1.00-------------------
...................................................................................................................................................................................................................TCTCCTCCTCCTCCCGGGCCCGCTGC............. 2611.001.00--------1.00-------------------------------
............................................................................................................................................................................TCAGCCCGAGAGCCA............................................................... 1550.200.20-------------------------------0.20--------
...................................................................................................................GATGGTCTCTGCCAA........................................................................................................................ 1590.110.11-------------------------------------0.11--