ID: uc001bub.2_intron_1_0_chr1_32496024_f.3p
GENE: (2)
chr1:32496925-32497174+


(4)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(11)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTCAGGTCTAGGAACTGCCACTTTCTAGTTTCATAACCTTAAGCTAATCACTTTATTAATATGGCTTCAGTGTCCTTCAGTAAAATGGGAATGGTAATACTCTACCTTTGCAGGGTTGTTTAAAATCAAGTGAGGTAATTTATGTGGAAATGTTTTTATATAGTAGCATGTATATTTAGAAATCCTCTATTTTCTGTCAGTTCAATTTTGTGGGGAAGATTCTTGGACCACAAGGGAATACAATCAAAAG
....................................................................................................(((((((((((..((((......))))..))))))........)))))......................................................................................................
................................................................................81...................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189782DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191498(GSM715608)
3genomic small RNA (size selected RNA from to. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040037(GSM532922)
G243T. (cervix)
.....................................................................................TGGGAATGGTAATACTTCT..................................................................................................................................................19107.000.0058.0031.0014.00--2.00----------1.00------1.00-------------------
.........................................................................................................................................ATTTATGTGGAAATGTTTTTATATAGTAGCATGTATATTTAGAAATCCTCTATTTTCTGTCA...................................................6217.007.00----7.00--------------------------------------
.....................................................................................TGGGAATGGTAATACTTC...................................................................................................................................................184.000.001.00---------3.00--------------------------------
.......................................................................................................................................................................................................................AAGATTCTTGGACCACAAGGGAATA..........2513.003.00---------3.00---------------------------------
..............................................................................................................................................................................................................TTTGTGGGGAAGATTCTTGGACC.....................2313.003.00--------3.00----------------------------------
...............................................................................................................................................................................................................................TGGACCACAAGGGAATACAATCA....2312.002.00------2.00------------------------------------
...............................................................................................................................................................................................................................TGGACCACAAGGGAATACA........1912.002.00-----------2.00-------------------------------
...............................................................................................................................................................................................................................TGGACCACAAGGGAATACAATCAAAAG2712.002.00-------------1.00----------------1.00------------
....................................................................................................................................................................................................................GGGAAGATTCTTGGACCACAAGGGAATA..........2812.002.00-----2.00-------------------------------------
..........................................................................................................................................................................................................CAATTTTGTGGGGAAGATTCTTGGT.......................252.000.00-----------------2.00-------------------------
.................................................................................................................................................................................................................GTGGGGAAGATTCTTGGACCACA..................2312.002.00---------------2.00---------------------------
................................................................................................................................AGTGAGGTAATTTATCTG........................................................................................................182.000.00------------------2.00------------------------
......................................................................................GGGAATGGTAATACTTCT..................................................................................................................................................182.000.00-1.00--------------1.00--------------------------
...............................................................................................................................................................................................................TTGTGGGGAAGATTCTTGGACCACA..................2512.002.00-------------------2.00-----------------------
..............................................................................................................................................................................................................................TTGGACCACAAGGGAATAC.........1911.001.00----------------------------1.00--------------
..................................................................................................................................................................................................................TGGGGAAGATTCTTGGACC.....................1911.001.00-------------1.00-----------------------------
................................................................................................................................................................TAGTAGCATGTATATATTT.......................................................................191.000.00---1.00---------------------------------------
................................................................................................................................................................TAGTAGCATGTATATACTG.......................................................................191.000.00------------1.00------------------------------
.........................................................................................................................................................................................................TCAATTTTGTGGGGAAGATTCTTGGACCA....................2911.001.00--------------------1.00----------------------
................................................................................................................................................................TAGTAGCATGTATATATTA.......................................................................191.000.00---1.00---------------------------------------
................................................................................................................................................................TAGTAGCATGTATATATTG.......................................................................191.000.00---1.00---------------------------------------
...........................................................................................................................................................TTATATAGTAGCATGTTTAG...........................................................................201.000.00---1.00---------------------------------------
................................................................................................................................................................TAGTAGCATGTATATTTTG.......................................................................191.000.00---1.00---------------------------------------
...................................................................................................................................................................................................................GGGGAAGATTCTTGGACC.....................1811.001.00-----------------------------------------1.00-
......................................................................................................................................................................................................................GAAGATTCTTGGACCACAAG................2011.001.00-------1.00-----------------------------------
...............................................................................................................................................................................................................................TGGACCACAAGGGAATAC.........1811.001.00---------------------------------------1.00---
.....................................................................................................................................................................................................................GGAAGATTCTTGGACCACAAGGG..............2311.001.00------1.00------------------------------------
................................................................................................................................................................................................................TGTGGGGAAGATTCTTGGACCACAAGGG..............2811.001.00--------------------------------1.00----------
....................................................................................................................................................................................................................GGGAAGATTCTTGGACCA....................1811.001.00------1.00------------------------------------
................................................................................................................................................................TAGTAGCATGTATATATAG.......................................................................191.000.00---1.00---------------------------------------
............................................................................................................TGCAGGGTTGTTTAAACCTG..........................................................................................................................201.000.00---1.00---------------------------------------
........................................................................................................................................................................................................................AGATTCTTGGACCACAA.................1711.001.00---------------------------1.00---------------
................................................................................................................................................................TAGTAGCATGTATATTG.........................................................................171.000.00------------1.00------------------------------
.........................................................................................................................................................................GTATATTTAGAAATCCTCTATTTTCTGTCAG..................................................3111.001.00-------------------------------1.00-----------
................................................................................................................................................................TAGTAGCATGTATATATC........................................................................181.000.00---1.00---------------------------------------
.....................................................................................TGGGAATGGTAATACATC...................................................................................................................................................181.000.00-1.00-----------------------------------------
.......................................................................................................................................................................................................................AAGATTCTTGGACCACA..................1711.001.00---------------------1.00---------------------
.....................................................................................TGGGAATGGTAATACTCT...................................................................................................................................................1811.001.00--1.00----------------------------------------
...................................................................................................................................................................................................................GGGGAAGATTCTTGGACCAC...................2011.001.00----------------------------------------1.00--
................................................................................................................................AGTGAGGTAATTTATGTGG.......................................................................................................1911.001.00-----------1.00-------------------------------
..................................................................................................................................................................................................................TGGGGAAGATTCTTGGACCGTT..................2211.001.00----------------------1.00--------------------
....................................................................................................................................................................................................................GGGAAGATTCTTGGACCACAAGGGAAT...........2711.001.00------------------------1.00------------------
.............................................................................................................................................................................................................................CTTGGACCACAAGGGAATACA........2111.001.00----------------------------------1.00--------
............................................................ATGGCTTCAGTGTCCCGAG...........................................................................................................................................................................191.000.00-------1.00-----------------------------------
...............................................................................................................................................................................................................................TGGACCACAAGGGAATACAAT......2111.001.00-----------------------------1.00-------------
.................................TAACCTTAAGCTAATCTCG......................................................................................................................................................................................................191.000.00---1.00---------------------------------------
..................................................................................................................................................................................................................TGGGGAAGATTCTTGGACCACA..................2211.001.00---------------------------------1.00---------
...........................................................................................................................................................................................................................................GAATACAATCAAAAGACTT191.000.00--------------1.00----------------------------
....................................................................................................................................................................................................................GGGAAGATTCTTGGACCACA..................2011.001.00--------------1.00----------------------------
..................................................................................................................................................................................................................TGGGGAAGATTCTTGGACCACAAGG...............2511.001.00------------------------------------1.00------
.....................................................................................................................................................................................................................GGAAGATTCTTGGACCACAA.................2011.001.00--------------------------------------1.00----
................................................................................................................................................................TAGTAGCATGTATATATTC.......................................................................191.000.00--------------------------1.00----------------
.......................................................................................................................................................................................................GTTCAATTTTGTGGGGAA.................................1820.500.50------------------------------------------0.50
.TCAGGTCTAGGAACTG.........................................................................................................................................................................................................................................1630.330.33--------------------0.33----------------------

Antisense strand
TTCAGGTCTAGGAACTGCCACTTTCTAGTTTCATAACCTTAAGCTAATCACTTTATTAATATGGCTTCAGTGTCCTTCAGTAAAATGGGAATGGTAATACTCTACCTTTGCAGGGTTGTTTAAAATCAAGTGAGGTAATTTATGTGGAAATGTTTTTATATAGTAGCATGTATATTTAGAAATCCTCTATTTTCTGTCAGTTCAATTTTGTGGGGAAGATTCTTGGACCACAAGGGAATACAATCAAAAG
....................................................................................................(((((((((((..((((......))))..))))))........)))))......................................................................................................
................................................................................81...................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189782DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR029128(GSM416757)
H520. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191498(GSM715608)
3genomic small RNA (size selected RNA from to. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR040037(GSM532922)
G243T. (cervix)
........TAGGAACTGCCACTTTCTA............................................................................................................................................................................................................................... 192.000.00-------2.00-----------------------------------
.............................................................................................................GCAGGGTTGTTTAAACTTG.......................................................................................................................... 191.000.00-------------------------1.00-----------------
..........................................................GAAGGACACTGAAGCCATAT............................................................................................................................................................................ 2011.001.00-----------------------------------1.00-------
.........................................................................................................CTTTGCAGGGTTGTTTAAACTGA.......................................................................................................................... 231.000.00-------------------------------------1.00-----