ID: uc001btt.2_intron_1_0_chr1_32258003_r
GENE: (7)
chr1:32257953-32258328-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(7)
BREAST 		(21)
CELL-LINE 		(4)
CERVIX 		(5)
FIBROBLAST 		(1)
HELA 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
CCAACATTGTCTGGGACCTTCTGGCCAGCATCTGCCCAGCCAAGGCCAAGGTACCTGCCCACTCTTGGGCACCCCCTCTTTTCCTAGTACCTTACTCCCACCTCCCTCTCCACTTCTAGAGCAGAGGCCTGGCTTGGATATCTGGGTCTAGTTCCCAGAGTGACTGCAGACTCACTGTGTGACCCTGGACAGGTCCCTCTGTTTCCTCCTCTGGAAGATGGAGACATACTTTCTCACGGGGTTCTCAGGGGTTTCAGGGAGCCCAGGGGTGTTGGCAGGAGCAGAGGATGACTGCGCTTACAGCTGCTCTCCTCCTGCCACCGCAGGACGTCTGCGTGGTCAGACTGTGCCCACATGGGGCCCGGGACACCCAGAA
............................................................................................................................................................................................................................................................................(((.(((((((((.((((.....(((......)))...)))).))))))))).)))....................................................
........................................................................................................................................................................................................................................................................265..........................................................326................................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038859(GSM458542)
MM386. (cell line)		SRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040028(GSM532913)
G026N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038853(GSM458536)
MELB. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR040037(GSM532922)
G243T. (cervix)		SRR040009(GSM532894)
G727T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGACT...................................................................................24145.0045.0013.00-6.009.00-4.00--2.001.00--1.00-----1.00---1.002.00--1.001.00-1.00---1.00-------1.00------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACT...................................................................................22125.0025.0015.00---3.001.00-1.00-1.00-------1.00-1.00--------1.00--1.00----------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGATGACTATC................................................................................26114.0014.00-14.00----------------------------------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGATGACT...................................................................................23114.0014.003.00-2.001.00-----2.002.001.002.00---------------------1.00-------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGA.....................................................................................2219.009.001.00-1.00--2.00--1.001.00------2.00----------------------1.00--------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGAC....................................................................................2319.009.004.00-------1.00--------1.00-1.00-1.00------------------1.00-------
...........................................................................................................................................................................................................................................................................GGTGTTGGCAGGAGCAGAGGA........................................................................................2117.007.001.00-2.001.001.00---1.00----------------1.00----------------------
............................................................................................................................................................................................................................................................................GTGTTGGCAGGAGCAGAGGATGATC...................................................................................2516.002.00-6.00----------------------------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACTG..................................................................................2315.005.001.00--1.002.00-------------1.00-----------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACTATC................................................................................2515.0025.00-5.00----------------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGACA...................................................................................2414.009.001.00----------1.00---1.00---------1.00----------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACTGT.................................................................................2414.005.00-------4.00----------------------------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGATGAC....................................................................................2214.004.001.00-------------2.00-----------------------------1.00---
................................................................................................................................................................................................................................................................................TGGCAGGAGCAGAGGATGACT...................................................................................2113.003.003.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATG......................................................................................2113.003.001.00----------1.00---1.00--------------------------------
...........................................................................................................................................................................................................................................................................GGTGTTGGCAGGAGCAGAGGAA.......................................................................................2213.007.002.00-----------1.00-----------------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACTGA.................................................................................2413.005.001.00----------1.00---------------------------------1.00--
...........................................................................................................................................................................................................................................................................GGTGTTGGCAGGAGCAGAGGAAA......................................................................................2312.007.001.00----1.00------------------------------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGATGACAA..................................................................................2412.004.00----------2.00-------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGAT.......................................................................................2012.002.002.00-----------------------------------------------
............................................................................................................................................................................................................................................................................GTGTTGGCAGGAGCAGAGGATGA.....................................................................................2312.002.00------2.00-----------------------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACTAA.................................................................................2412.0025.001.00-1.00---------------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGACTAA.................................................................................2612.0045.001.00-------------------------1.00---------------------
...............................................................................................................................................................................................................................................................................................................CTGCTCTCCTCCTGCCACCGCAGT.................................................242.000.00----2.00-------------------------------------------
....................................................................................................................................................................................................................................................TCAGGGGTTTCAGGGAGCC.................................................................................................................1911.001.00-------------------------------------------1.00----
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATG......................................................................................1911.001.00---------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGATT...................................................................................2411.009.00---------------------------1.00--------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGATGT........................................................................................181.000.00-------------1.00----------------------------------
............................................................................................................................................................................................................................................................................GTGTTGGCAGGAGCAGAGGACGA.....................................................................................231.000.00------1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATA......................................................................................2111.002.001.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGACATG.......................................................................................191.000.00-------------1.00----------------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACTCTAC...............................................................................2611.0025.001.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................GGTGTTGGCAGGAGCAGAGG.........................................................................................2011.001.001.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATACA....................................................................................2311.002.00--------------------1.00---------------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGATTTT....................................................................................221.000.00------1.00-----------------------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACTAT.................................................................................2411.0025.001.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................GGGTGTTGGCAGGAGCAGAGGA........................................................................................2211.001.001.00-----------------------------------------------
..........................................................................................................................AGAGGCCTGGCTTGGAATG...........................................................................................................................................................................................................................................191.000.00-----------------------------------1.00------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGAAA......................................................................................201.000.00--------------------------------1.00---------------
...........................................................................................................................................................................................................................................................................GGTGTTGGCAGGAGCAGAGGATGAA....................................................................................2511.001.00------------------------------1.00-----------------
...........................................................................................................................................................................................................................................................................GGTGTTGGCAGGAGCAGA...........................................................................................1811.001.00------------------------------------------1.00-----
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGATGACTAA.................................................................................2511.0014.00--1.00---------------------------------------------
...............................................................................................................................................................................................................................................................................................................CTGCTCTCCTCCTGCCCCAA.....................................................201.000.00-------------------------------------1.00----------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACAA..................................................................................231.000.001.00-----------------------------------------------
............................................................................................................................................................................................................................................................................GTGTTGGCAGGAGCAGAGGAAA......................................................................................221.000.00----------1.00-------------------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATAA.....................................................................................201.000.00----------------------------------------------1.00-
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACAAA.................................................................................241.000.001.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGACTT..................................................................................2511.0045.001.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................GGGTGTTGGCAGGAGCAGAGA.........................................................................................211.000.00---------1.00--------------------------------------
...........................................................................................................................................................................................................................................................................GGTGTTGGCAGGAGCAGAGAA........................................................................................211.000.00--1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGCACG......................................................................................201.000.00--------------------------------------1.00---------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGACA...................................................................................221.000.00--1.00---------------------------------------------
............................................................................................................................................................................................................................................................................GTGTTGGCAGGAGCAGAGGATGACT...................................................................................2511.001.00--------1.00---------------------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGAAT...................................................................................221.000.00-------1.00----------------------------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGATGACTT..................................................................................2411.0014.00----------------------1.00-------------------------
............................................................................................................................................................................................................................................................................GTGTTGGCAGGAGCAGAGGATGAT....................................................................................2411.002.001.00-----------------------------------------------
............................................................................................................................................................................................................................................................................GTGTTGGCAGGAGCAGAGGATGT.....................................................................................231.000.00------1.00-----------------------------------------
..............................................................................................................................................................................................................................................................................GTTGGCAGGAGCAGAGGATGAA....................................................................................221.000.00--------------1.00---------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGA........................................................................................1911.001.001.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................GGTGTTGGCAGGAGCAGAGGATGA.....................................................................................2411.001.00---1.00--------------------------------------------
............................................................................................................................................................................CACTGTGTGACCCTGGACAGGT......................................................................................................................................................................................2211.001.00----1.00-------------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGTC....................................................................................2311.003.00---1.00--------------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATAAA....................................................................................2311.002.00--------------------1.00---------------------------
...............................................................................................................................................................................................................................................................................TTGGCAGGAGCAGAGGATGAAA...................................................................................221.000.00----1.00-------------------------------------------
.............................................................................................................................................................................................................................................................................TGTTGGCAGGAGCAGAGGATGACTA..................................................................................2511.0045.001.00-----------------------------------------------

Antisense strand
CCAACATTGTCTGGGACCTTCTGGCCAGCATCTGCCCAGCCAAGGCCAAGGTACCTGCCCACTCTTGGGCACCCCCTCTTTTCCTAGTACCTTACTCCCACCTCCCTCTCCACTTCTAGAGCAGAGGCCTGGCTTGGATATCTGGGTCTAGTTCCCAGAGTGACTGCAGACTCACTGTGTGACCCTGGACAGGTCCCTCTGTTTCCTCCTCTGGAAGATGGAGACATACTTTCTCACGGGGTTCTCAGGGGTTTCAGGGAGCCCAGGGGTGTTGGCAGGAGCAGAGGATGACTGCGCTTACAGCTGCTCTCCTCCTGCCACCGCAGGACGTCTGCGTGGTCAGACTGTGCCCACATGGGGCCCGGGACACCCAGAA
............................................................................................................................................................................................................................................................................(((.(((((((((.((((.....(((......)))...)))).))))))))).)))....................................................
........................................................................................................................................................................................................................................................................265..........................................................326................................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038859(GSM458542)
MM386. (cell line)		SRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR040028(GSM532913)
G026N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038853(GSM458536)
MELB. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR040037(GSM532922)
G243T. (cervix)		SRR040009(GSM532894)
G727T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
.......................TACCTTGGCCTTGGCTGGGCAGATGCTGGC................................................................................................................................................................................................................................................................................................................................... 3012.002.00------------------------2.00-----------------------
..........................................................................................CTTACTCCCACCTCCCGA............................................................................................................................................................................................................................................................................ 181.000.00-------------1.00----------------------------------
................................................................................................................................................................................................GTCCCTCTGTTTCCTTAT...................................................................................................................................................................... 181.000.00------------------------------------1.00-----------
...........................................GGCCAAGGTACCTGCCCCG.......................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------1.00--------------------------
............................................................................................TACTCCCACCTCCCTCTTAGT....................................................................................................................................................................................................................................................................... 211.000.00------1.00-----------------------------------------
.................................................................................................................................................................................................CAGAGGAGGAAACAGAGGGA................................................................................................................................................................... 2020.500.50-----------------------------------------------0.50