ID: uc001bsf.1_intron_0_0_chr1_31406190_r.3p
GENE: PUM1(15)
chr1:31406140-31406389-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(26)
B-CELL
(8)
BRAIN
(25)
BREAST
(56)
CELL-LINE
(3)
CERVIX
(2)
FIBROBLAST
(6)
HEART
(5)
HELA
(1)
KIDNEY
(15)
LIVER
(3)
OTHER
(2)
RRP40.ip
(46)
SKIN
(4)
UTERUS
(1)
XRN.ip

Sense strand
CCAAAGTGCTAGAAGTCAGGGGACTGGGCTGAGCCAGTGAAAGGTATTGCTGTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGATGCATGACATGCAAATGCATGTCCGGGAAGCCTGCCCCCAAGTCTCATCTCAGGCCATGTAACACAGACTGTCTTTCCTCCCCAGATCCGGCCCCACATCGCAACTCTTCGTAAGTACACCTATGGCAAGCACAT
......................................................((((.........((.(((((.((..((.((.((.(((.((((((.(((((((((((.....)))).))))))).))))))....(((.........)))......)))..)).))))..))))))).))..........))))....................................................
..................................................51.........................................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR029129(GSM416758)
SW480. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR038859(GSM458542)
MM386. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM416733(GSM416733)
HEK293. (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR038855(GSM458538)
D10. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR038853(GSM458536)
MELB. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAA................................................231306.0029.001.0010.005.00-17.008.0014.0010.006.004.007.0018.0010.00-6.007.003.006.001.004.004.003.00-7.002.006.00-5.001.001.004.004.001.004.002.003.006.001.001.004.006.002.002.00-2.004.001.00-1.001.002.003.003.002.00-1.004.003.003.003.001.00--2.002.00-2.00-3.002.00----1.00-2.00-2.00-2.001.00--1.00------2.00-1.001.001.003.001.00-3.00-1.001.00-1.00-1.001.00----1.00-1.001.001.00--1.00---1.00-1.00-----1.001.00-1.001.00--1.001.001.002.00-----1.00---1.00---1.00-------1.00-1.00-----1.001.00---------1.00----1.001.00------1.00--1.00-1.00---
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAA................................................241296.0035.001.0019.0025.00-8.0011.006.006.0010.00-8.00-5.00-8.004.005.002.001.005.005.004.0010.003.007.003.00-1.003.005.004.002.005.002.003.002.001.001.004.002.00-3.00--2.00-1.003.002.003.002.002.00-2.001.001.00-1.00-1.003.002.00-2.00--1.003.001.00-1.00-1.001.001.00-1.002.00--1.002.00-2.00-3.00-1.002.00-1.001.00-1.002.002.00----3.00-1.00-1.00--1.00--1.00--1.001.001.001.001.00--2.001.00-1.00-1.00-2.001.001.001.001.00-2.001.00-1.001.001.00---1.00--1.00--1.00---1.001.00--1.00--1.001.00--------1.00----1.00---1.001.00----1.00--------------1.00---1.00
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCA...................................................20181.0081.0067.00--11.00---------2.00---------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCA...................................................21160.0060.0039.00--14.00---------4.00----------------------------------------1.00----------2.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAAA...............................................24153.0029.001.004.00---2.001.00-1.00-1.00-1.001.00---1.00-1.00-----1.00-1.00----1.003.00-1.00-1.001.001.00--2.00-----1.00-2.00-2.00--2.00--2.00--1.00----1.001.00--1.00-1.00---1.00--2.00----------------------------1.00-1.00-------1.00---------------------1.00---------------------1.00-----------------1.00----1.00---1.00---1.00-------1.00--
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAG..................................................21145.0045.0027.00-2.003.00------------------------------1.00-1.00----------------1.00----------1.00------1.00-------1.00------1.00---1.00-----------------1.00----------1.00--------------------------------------------1.00--1.00-------1.00----------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGA.................................................23135.0035.007.001.008.001.00-----------2.00-1.00----------2.00--1.001.00--------1.00---------------------1.00-----1.00-----------------1.00--1.00------1.00--------------------------------------1.00--------------------1.00--------1.00---------1.00---------1.00-----------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGA.................................................22129.0029.0011.00-2.001.00---------1.00-1.00---1.00-------3.00----1.00---------1.00----------------------1.00---1.00-1.00--1.00--1.00---------------------------------------1.00------------------------------------1.00-------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAAA...............................................25129.0035.00-1.005.00--1.001.001.001.00-2.00-----2.00---1.001.00------------1.00----------1.00----------------1.00------------2.00-------1.002.00-1.00------1.00------------------------------2.00-1.00-----------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAG..................................................22124.0024.0018.00--2.00---------2.00---1.00-----------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAAAA..............................................25114.0029.00-----------------1.003.00-1.00--------------1.00-----------1.00------1.00-------1.00----------3.00---------------1.00-------------------------------------------------1.00----------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGGAA...............................................25114.0024.00---------14.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAAAA..............................................26112.0035.00-1.00--1.00--1.00--------2.001.00---1.00------------1.00---1.00---------------------1.00--------------1.00-------------------------------------------------------------1.00------------------------------------------------------------------
..............................................................................................................................................................................TAACACAGACTGTCTTTCCTCCCCAGAA................................................2818.001.00-2.00-----------------------1.00--------------------------------------------2.00------------------1.00--------------------------------------1.001.00--------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCCGAA................................................2417.002.00--1.00---------------------------------------------1.001.00-----------1.00----------1.00-----------------------------------------------------------------------------1.00-------1.00---------------------------------------------
.................................................................................................................................................................................CACAGACTGTCTTTCCTCCCCAGAA................................................2517.003.00-2.001.00----1.001.00------------------------------------1.00--------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CACAGACTGTCTTTCCTCCCCAGAAA...............................................2616.003.00-------1.00----------4.00-----------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................AGACTGTCTTTCCTCCCCAGAA................................................225.000.00------------------3.00--------------------------------------------------------------------------------------2.00--------------------------------------------------------------------------------------------------
................................................................................................................................................................................ACACAGACTGTCTTTCCTCCCCAGAA................................................2615.001.00-4.00------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................TAAGTACACCTATGGCAAGCAC..2214.004.00-4.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................TGTAACACAGACTGTCTTTCCTCCCCAGAA................................................3014.001.00----------------------------------------------1.00------------1.00--1.00-------------------------------------------------------------------------------------------------------------------------------------1.00-------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAG................................................2314.0029.00--1.00---------1.00---------------------------------------------------------------------------------------------1.00--1.00----------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAT................................................2414.004.00---------------2.00-------------1.00------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAT................................................2313.003.00----------------------------------------------1.00---------1.00-----------------------------------------------------------------------------------------------------------------------------------------1.00---------
........................................................................................................................................................................................................ATCCGGCCCCACATCGC.................................1713.003.00----------------------------------------------------------------------------------3.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGGA................................................2313.0045.00----------------------------1.00-------------2.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGCA................................................2313.0045.00------------------------1.00----1.00-------------------------------------------------------------------------------------------------------------------------------------------------------1.00----------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGCA................................................2413.0024.00--1.00--------------------------1.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TAACACAGACTGTCTTTCCTCCCCAGAGA...............................................2913.001.00--3.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................CACAGACTGTCTTTCCTCCCCAGA.................................................2413.003.00-----------------------------------------1.00-------------------------------------------------------1.00---------------1.00------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAG................................................2413.0035.00--------------3.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGG.................................................2213.0045.00-2.00-------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAAG...............................................2413.0029.00-2.001.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAGA...............................................2512.0035.00--------1.00--------------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................ATCGCAACTCTTCGTAAGTACACCT.............2512.002.00--------------------------------------------------------------1.00------------1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGACA...............................................2412.0029.00-------------------1.00-------------------------------------------------------------------------------------------1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCC....................................................2012.002.002.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAAAAA.............................................2612.0029.00----1.00--------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............AGTCAGGGGACTGGGCTGAGCCAGCG...................................................................................................................................................................................................................262.000.00--------------------------2.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TAACACAGACTGTCTTTCCTCCCCAGAAA...............................................2912.001.00-2.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCA......................................................182.000.002.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCAGAA...................................................202.000.00---------------------------------------------------------1.00-----------------------------------------------------------------------------1.00--------------------------------------------------------------------
.........................................................................................................................................................................CCATGTAACACAGACTGTCTTTCCTCCCCAGA.................................................3212.002.00-------------2.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAAT...............................................2412.0029.00-----------------------------------------------2.00------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGATA...............................................2512.004.00----------------1.00-----------------------------------------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................................................................CACAGACTGTCTTTCCTCCCCA...................................................2212.002.002.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
........................................AAGGTATTGCTGTAGGCTTT..............................................................................................................................................................................................202.000.00-------------------------------------------------------------------------------------------------------------1.00-1.00--------------------------------------------------------------------------------------------
..........AGAAGTCAGGGGACTGGGCTGAGCCAGGA...................................................................................................................................................................................................................292.000.00--------------------------2.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............AAGTCAGGGGACTGGGCTGAGCCAGTGA..................................................................................................................................................................................................................2812.002.00--------------------------2.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................TGTAACACAGACTGTCTTTCCTCCCCAGAAA...............................................3112.001.00-------------1.00----------------------------------------------------------------------------------------------------------------------1.00-----------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCAGAA.................................................2312.001.00-------------------------------------2.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAACA..............................................2512.0029.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00-----------
...........................................................................................................................................................................ATGTAACACAGACTGTCTTTCCTCCCCAGAA................................................311.000.00-----------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................TCAGGCCATGTAACACAGACTGTC..............................................................2411.001.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................GGGACTGGGCTGAGCCAGTGAAAGGTATTGC........................................................................................................................................................................................................3111.001.00--------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................ACTCTTCGTAAGTACACCTATGGCAAGC....2811.001.00------------------------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------------------------------------
............................................................................................................................................................................................................................TCTTCGTAAGTACACCTATGGCAAGCAAC.291.000.00----------------------------------------------------------------------------------------------------------------------------------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGCAG...............................................2411.0045.00----------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................TCTTCGTAAGTACACCTATGGCAAGCACA.2911.001.00----------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAAC...............................................2511.0035.00---------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GCAACTCTTCGTAAGTACACCTATGGCA.......2811.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------1.00------------------------------------------
...............TCAGGGGACTGGGCTGAGCCAGCG...................................................................................................................................................................................................................241.000.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGATA...............................................2411.003.00-----------------------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................................................................TGTAACACAGACTGTCTTTCCTCCCAGAA.................................................291.000.00--------------------------------------------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
................................................................................................................................................................................ACACAGACTGTCTTTCCTCCCCAGA.................................................2511.001.00----------------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGGA................................................2411.0024.00------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TAACACAGACTGTCTTTCCTCCCCAG..................................................2611.001.00-------------------------------------------------------------------------------------------------------------------------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................................AGACTGTCTTTCCTCCCCAG..................................................2011.001.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCCGCA................................................2411.002.00-------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............AGTCAGGGGACTGGGAGGC..........................................................................................................................................................................................................................191.000.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGTA................................................2411.0024.00-------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................AACACAGACTGTCTTTCCTCC......................................................2111.001.00----------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGC.................................................2311.0024.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................CTGGGCTGAGCCAGTGAAAGGTAT...........................................................................................................................................................................................................2411.001.00------------------------------------------------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................ATGTAACACAGACTGTCTTTCCTCCCCAGAGATA.............................................341.000.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00--------------------------
................................................................................................................................................................................ACACAGACTGTCTTTCCTCCCCAGAAG...............................................2711.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------1.00------------------------------------------------------
............................................................................................................................................................................TGTAACACAGACTGTCTTTCCTCCCCAGA.................................................2911.001.00-----------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAAC...............................................2411.0029.00-------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................TGTAACACAGACTGTCTTTCCTCCCCCGAA................................................301.000.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00-------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGCAA...............................................2411.0045.00----------------------------------------------------------------------------------------------------------------------1.00-------------------------------------------------------------------------------------
................................................................................................................................................................................ACACAGACTGTCTTTCCTCCCCAGAAA...............................................2711.001.00----------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TAACACAGACTGTCTTTCCTCCCCAGA.................................................2711.001.00-------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................TGTAGGGGTGTGTGTGTGTGTGTGTGTA............................................................................................................................................................................281.000.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAAAAC.............................................2611.0029.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..........AGAAGTCAGGGGACTGGGCT............................................................................................................................................................................................................................2011.001.00------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AACTCTTCGTAAGTACACCTATGGC........2511.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00------------
.............................................................................................................................................................................................................................CTTCGTAAGTACACCTATGG.........2011.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00------
....................................................................................................................................................................................AGACTGTCTTTCCTCCCCA...................................................1911.001.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................AACACAGACTGTCTTTCCTCCCC....................................................2311.001.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGCC................................................2311.0045.00-------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................TGTAACACAGACTGTCTTTCCTCCCCAG..................................................2811.001.00----------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTGTCTTTCCTCCCCAGAAAA..............................................211.000.00--------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................AGGGGTGTGTGTGTGTGTGGGTT..............................................................................................................................................................................231.000.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAAATA.............................................2711.0035.00-----------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAGAAA.............................................2711.0035.00-------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAAAG..............................................2511.0029.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCCGAA................................................2311.001.00-------------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGCT................................................2411.0024.00--------------------------------------------------------------------------------------------------------------------------------------------------1.00---------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCATAA................................................2411.0060.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................ATCCGGCCCCACATCGCAACTCT...........................2311.001.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................CAAATGCATGTCCGGGAAGCCT......................................................................................................2211.001.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00--------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGTA................................................2311.0045.00------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAAAAA.............................................2711.0035.00--------------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................AACACAGACTGTCTTTCCTCCCCAGAAA...............................................281.000.00-------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCATAAA...............................................2511.0060.00--------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGAATA..............................................2611.0035.00----1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCC.....................................................1911.001.001.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCACAA................................................2411.0060.00------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------------------------------------------------------
.........................................................................................................................................................................................................TCCGGCCCCACATCGCAACTCTTC.........................2411.001.00----------------------------------------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCCGA.................................................2211.001.00--------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCC....................................................1911.001.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACAGACTGTCTTTCCTCCCCAGACGAA.............................................2711.0035.00---------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................TAGGGGTGTGTGTGTCGTT...................................................................................................................................................................................191.000.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCAGAC................................................2311.0029.00----------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................TACACCTATGGCAAGCACTCCG221.000.00-------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------
................CAGGGGACTGGGCTGAGCTCTG....................................................................................................................................................................................................................221.000.00-----------------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TAACACAGACTGTCTTTCCTCAGAA...................................................251.000.00--------------------------------------------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
.....................................................AGGGGTGTGTGTGTGTGTGGGCG..............................................................................................................................................................................231.000.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CAGACTGTCTTTCCTCCCCATAA................................................2311.0081.00------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................GTGTGTATGTGTGTGTGATGCATG.................................................................................................................................2420.500.50----------------------------------------------------------------------------------------------------------------------------------------------0.50-------------------------------------------------------------

Antisense strand
CCAAAGTGCTAGAAGTCAGGGGACTGGGCTGAGCCAGTGAAAGGTATTGCTGTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGATGCATGACATGCAAATGCATGTCCGGGAAGCCTGCCCCCAAGTCTCATCTCAGGCCATGTAACACAGACTGTCTTTCCTCCCCAGATCCGGCCCCACATCGCAACTCTTCGTAAGTACACCTATGGCAAGCACAT
......................................................((((.........((.(((((.((..((.((.((.(((.((((((.(((((((((((.....)))).))))))).))))))....(((.........)))......)))..)).))))..))))))).))..........))))....................................................
..................................................51.........................................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
TAX577579(Rovira)
total RNA. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR029129(GSM416758)
SW480. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR038854(GSM458537)
MM653. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR038859(GSM458542)
MM386. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577744(Rovira)
total RNA. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR191398(GSM715508)
35genomic small RNA (size selected RNA from t. (breast)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM416733(GSM416733)
HEK293. (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR038855(GSM458538)
D10. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR029126(GSM416755)
143B. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR038853(GSM458536)
MELB. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
.................AGGGGACTGGGCTGACCCG...................................................................................................................................................................................................................... 1911.000.00-------------------------------------------5.00------------------------------------------------3.00-----3.00---------------------------------------------------------------------------------------------------------
...................................................................................................GTGTATGTGTGTGTGACCTG................................................................................................................................... 202.000.00-------------------------------------------------------------------------------------------------------2.00----------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TCCGGCCCCACATCGCAGAA............................. 201.000.00----------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................TGTGTGTGTGTGTGTGTATGTGACAA.......................................................................................................................................... 261.000.00---------------------------------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................GCGATGTGGGGCCGGATCT................................. 1911.001.00-----------------------------------------------------------------------------------------------------------------------------------------------1.00------------------------------------------------------------
.................................................................................................................................................CCTGCCCCCAAGTCTTTTT...................................................................................... 191.000.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00-
.........................................................................................................................................................................................................TGCGATGTGGGGCCGGA................................ 1711.001.00-------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................AGCCTGCCCCCAAGTGT.......................................................................................... 171.000.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00---------------------------------
........................................................................................................................................................................................TGTCTTTCCTCCCCACAC................................................ 181.000.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------------
.........................................................................................................................................................................................................TCCGGCCCCACATCGGAAG.............................. 191.000.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------