ID: uc001brm.1_intron_16_0_chr1_29435950_f.3p
GENE: (17)
chr1:29438680-29438929+


(1)
AGO2.ip 		(6)
B-CELL 		(1)
BREAST 		(15)
CELL-LINE 		(2)
HEART 		(4)
LIVER 		(1)
OTHER 		(4)
SKIN

Sense strand
TTGTTTGTTTGTTAATAGAGACGAGGTCTCATTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCGCAAGCATTCCTCCTATCTCAGCCTCCCAAAGTGTTGAGATTACAAGTGTGAACCACTAAACCTGGCCTCTTTTTCTTTTTTTTTAATTCTTGTTATATCGCTGATCTCATATGACATCTTCTCTTTGGTTCCAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGAT
......................................................................................(((......((((......((((....))))..))))......)))......................................................................................................................
....................................................................................85.......................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189785SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784
...................................................................................................................................CCTCTTTTTCTTTTTTTTTTCTG................................................................................................23141.000.0081.0046.0011.003.00-------------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTCTG.................................................................................................2240.000.0019.0013.003.005.00-------------------------------
.......................................................................................................................................TTTTTCTTTTTTTTTAATTCTG.............................................................................................228.000.002.002.00-4.00-------------------------------
...........................................................................................................................................................TTGTTATATCGCTGATC..............................................................................1717.007.00----7.00------------------------------
....................................................................................................................................CTCTTTTTCTTTTTTTTTAAG.................................................................................................215.000.002.00-3.00--------------------------------
.....................................................................................................................................TCTTTTTCTTTTTTTTTAATTCTG.............................................................................................243.000.003.00----------------------------------
...................................................................................................................................................................................................................TGGGATTTCAGAGACACG.....................1813.003.00-------1.00---1.00---------1.00-------------
......................................................................................................................................................................................................AGACTGTAAAAGGTGGGATTTCAGAGACA.......................2912.002.00------------2.00----------------------
....................................................................................................................................CTCTTTTTCTTTTTTTTTAATTTTG.............................................................................................252.000.00--2.00--------------------------------
....................................................................................................................................................................................................................GGGATTTCAGAGACACGTA...................1912.002.00-------1.00---1.00-----------------------
..............................................................................................................................................................................................................AAAGGTGGGATTTCAGAGACACGTA...................2512.002.00---------------2.00-------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTCCTG................................................................................................232.000.001.001.00---------------------------------
.......................................................................................................................................TTTTTCTTTTTTTTTAATTCTTCAG..........................................................................................252.000.00---2.00-------------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTTCCG................................................................................................232.000.002.00----------------------------------
..................................................................................................................................................................................................................GTGGGATTTCAGAGACACG.....................1911.001.00-------1.00---------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTACAG...................................................................................................201.000.001.00----------------------------------
....................................................................................................................................CTCTTTTTCTTTTTTTTTGGAC................................................................................................221.000.00-------------------1.00---------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTAAAG................................................................................................231.000.00---1.00-------------------------------
..........................TCTCATTATGTTGCCCAGGCTGGGCC......................................................................................................................................................................................................261.000.00-----1.00-----------------------------
....................................................................................................................................CTCTTTTTCTTTTTTTTTGCAG................................................................................................221.000.00------1.00----------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTACAG.................................................................................................221.000.00--1.00--------------------------------
...........................................................................................................................................................................................................GTAAAAGGTGGGATTTCAGAGACACATC...................281.000.00--------1.00--------------------------
......................................................................................................................................................................................................AGACTGTAAAAGGTGGTT..................................181.000.00-------1.00---------------------------
.........................................................................................TCCCAAAGTGTTGAGATTACATCTC........................................................................................................................................251.000.00----------1.00------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTTCTA................................................................................................231.000.00-1.00---------------------------------
...................................................................................................................................................................................................................TGGGATTTCAGAGACACGTATA.................2211.001.00-------------1.00---------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTCCGG................................................................................................231.000.001.00----------------------------------
.................................................................................................................................................................................................GTTCCAGACTGTAAAGA........................................171.000.00-----------------------1.00-----------
....................................................................................................................................CTCTTTTTCTTTTTTTTTCAAG................................................................................................221.000.00--1.00--------------------------------
........................................................................................................................................TTTTCTTTTTTTTTAATTCG..............................................................................................201.000.00---1.00-------------------------------
...............................................................................................................................................................................................................AAGGTGGGATTTCAGAGACACGTA...................2411.001.00--------1.00--------------------------
................................................................................................................................................................................................................AGGTGGGATTTCAGAGAC........................1811.001.00-----------------1.00-----------------
......................................................................................................................................................................................................................................ATTGAAAAGAGAATTGTGA.1911.001.00--------------------------------1.00--
..................................................................................................................................................................................................................GTGGGATTTCAGAGACACGTATTGA...............2511.001.00----------1.00------------------------
...........................................................................................................................................TCTTTTTTTTTAATTCTTTTTA.........................................................................................221.000.00---------1.00-------------------------
................................................................................................................................TGGCCTCTTTTTCTTTTTTTTTTTG.................................................................................................251.000.00-----1.00-----------------------------
.....................................TGCCCAGGCTGGTCTCAAACTCCTTAAG.........................................................................................................................................................................................281.000.00---------------------------1.00-------
......................................................................................................................................CTTTTTCTTTTTTTTTACG.................................................................................................191.000.00---1.00-------------------------------
...............................................................................................................................................................................................................AAGGTGGGATTTCAGAGAC........................1911.001.00----------------1.00------------------
.......................................................................................................................................TTTTTCTTTTTTTTTAATTCTTACCT.........................................................................................261.000.00------1.00----------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTCCG.................................................................................................221.000.001.00----------------------------------
..........................................................................................................................................TTCTTTTTTTTTAATTCCTTG...........................................................................................211.000.00---1.00-------------------------------
.............................................................................................................................................................................................................AAAAGGTGGGATTTCAGAGACA.......................2211.001.00------------------1.00----------------
......................................................................................................................................CTTTTTCTTTTTTTTTAATAAG..............................................................................................221.000.00--1.00--------------------------------
.................................................................................................................................GGCCTCTTTTTCTTTTTTTTTTTTG................................................................................................251.000.001.00----------------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTCTA.................................................................................................221.000.00-1.00---------------------------------
......................................................................................................................................CTTTTTCTTTTTTTTTAATTATTG............................................................................................241.000.00---1.00-------------------------------
....................................................................................................................................................................................................................GGGATTTCAGAGACACGTATT.................2111.001.00---------------------------------1.00-
........................................................................................................................................TTTTCTTTTTTTTTAATTCTTTTGG.........................................................................................251.000.00------1.00----------------------------
.....................................................................................................................................................................................................CAGACTGTAAAAGGTGGGATTT...............................2211.001.00----------------1.00------------------
....................................................................................................................................................................................................................GGGATTTCAGAGACACGTAT..................2011.001.00-----------1.00-----------------------
..............................................................................................................................................................................................................AAAGGTGGGATTTCAGAGACACG.....................2311.001.00-----1.00-----------------------------
................................................................................................................................................................................................................AGGTGGGATTTCAGAGACA.......................1911.001.00-----------------------------1.00-----
............................................................................................................................................................................................................TAAAAGGTGGGATTTCAGAGACAC......................2411.001.00-------------1.00---------------------
...................................................................................................................................................................................................................TGGGATTTCAGAGACAACTA...................201.000.00--------------1.00--------------------
...................................................................................................................................................................................................................TGGGATTTCAGAGACACGTAT..................2111.001.00-------------------------------1.00---
...........................................................................................................................................................................................................GTAAAAGGTGGGATTTCAGAGACA.......................2411.001.00--------1.00--------------------------
....................................................................................................................................CTCTTTTTCTTTTTTTTTAAACA...............................................................................................231.000.00---------1.00-------------------------
...................................................................................TCAGCCTCCCAAAGTGTTGAGA.................................................................................................................................................2201.001.00--------------------1.00--------------
.....................................................................................................................................TCTTTTTCTTTTTTTTTACAAG...............................................................................................221.000.001.00----------------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTTCGG................................................................................................231.000.001.00----------------------------------
....................................TTGCCCAGGCTGGTCTCAAACTCCGGCC..........................................................................................................................................................................................281.000.00-----1.00-----------------------------
.............AATAGAGACGAGGTCTGTGG.........................................................................................................................................................................................................................201.000.00--------------1.00--------------------
....................................................................................CAGCCTCCCAAAGTGTTGAGATTACATGG.........................................................................................................................................291.000.00----------1.00------------------------
......................................................................................................................................................................................................AGACTGTAAAAGGTGGGATTTCA.............................2311.001.00--------1.00--------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTAAAG...................................................................................................201.000.00--1.00--------------------------------
.....................................................................................................................................................TAATTCTTGTTATATCGCTG.................................................................................2011.001.00------------------------------1.00----
......................................................AACTCCTGGCCGCAATTAA.................................................................................................................................................................................191.000.00---------1.00-------------------------
......................................................................................................................................CTTTTTCTTTTTTTTTACTAG...............................................................................................211.000.00-1.00---------------------------------
.........................................................................................................................................TTTCTTTTTTTTTAATTCTTTTG..........................................................................................231.000.00---1.00-------------------------------
.............................................................................................................................................................GTTATATCGCTGATC..............................................................................1520.500.50----------------------------------0.50
...................................................................................................................................CCTCTTTTTCTTTTTTTTTATTTG...............................................................................................2460.170.170.17----------------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTATTTT...............................................................................................2460.170.170.17----------------------------------
...................................................................................................................................CCTCTTTTTCTTTTTTTTTA...................................................................................................2060.170.17---0.17-------------------------------

Antisense strand
TTGTTTGTTTGTTAATAGAGACGAGGTCTCATTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCGCAAGCATTCCTCCTATCTCAGCCTCCCAAAGTGTTGAGATTACAAGTGTGAACCACTAAACCTGGCCTCTTTTTCTTTTTTTTTAATTCTTGTTATATCGCTGATCTCATATGACATCTTCTCTTTGGTTCCAGACTGTAAAAGGTGGGATTTCAGAGACACGTATTGAAAAGAGAATTGTGAT
......................................................................................(((......((((......((((....))))..))))......)))......................................................................................................................
....................................................................................85.......................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189785SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784
.........................................................................TCCTCCTATCTCAGCCTCCCAAACCTC...................................................................................................................................................... 272.000.00------2.00----------------------------
......................GAGGTCTCATTATGTTGCCCAGGCTGT......................................................................................................................................................................................................... 271.000.00-----1.00-----------------------------
.........................................................................................................................................................................................................................................GAAAAGAGAATTGTGCCTT 191.000.00---------1.00-------------------------
.........................................................................TCCTCCTATCTCAGCCTCCCAAAGTCCTC.................................................................................................................................................... 291.000.00-----1.00-----------------------------
...........................................GGCTGGTCTCAAACTCCTGGCGGCC...................................................................................................................................................................................... 251.000.00------1.00----------------------------
..........................................................CCTGGCCGCAAGCATGT............................................................................................................................................................................... 171.000.00--------------------------1.00--------
..........................................................................................................................................................................................................TGTAAAAGGTGGGATCCA.............................. 181.000.00------------------------1.00----------
.............................................................................CCTATCTCAGCCTCCCAAACATC...................................................................................................................................................... 231.000.00-----1.00-----------------------------
......................................GCCCAGGCTGGTCTCAAACTCCTGGAC......................................................................................................................................................................................... 271.000.00-------------------------1.00---------
...............................................................................................................................................................................CCAAAGAGAAGATGTCATA........................................................ 1911.001.00----------------------1.00------------
.............................................................................GGGAGGCTGAGATAGG............................................................................................................................................................. 1601.001.00----------------------------1.00------