| (1) AGO1.ip | (1) AGO2.ip | (2) B-CELL | (17) CELL-LINE | (2) CERVIX | (1) FIBROBLAST | (3) LIVER | (1) OTHER | (8) SKIN | (1) XRN.ip |
| ACAAGTTGCTGGCGCATCGGCCATGGCTCATCACCAAGGAACACATCCAGGTGCAGGGGGCAGAGAGGCGGGTGTCTGAGGGAGCACAGAGGCCTGGCTGGTGCCTGGTGGGTAACCCAGGGCAGGCACTGAGCAGCTCTGACCTCCCCCCTTGTCCCTTCCAGGCCTTGCTGAAGACCGGCGAGCACACTTGGTCCCTGGCCGAGCTCATTCA ...................................................((.((((((((.((.((.(((.(((.(((...((.(((..(((((.((((((((.....)))).))..)).))))).))).))..))).)))..))))))))))))))).))................................................... ..................................................51...............................................................................................................164................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line) | SRR189786 | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR189787 | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR189782 | SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin) | SRR037936(GSM510474) 293cand1. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR040008(GSM532893) G727N. (cervix) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR029126(GSM416755) 143B. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR033728(GSM497073) MALT (MALT413). (B cell) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR363674(GSM830251) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR343334 | SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin) | SRR039614(GSM531977) HBV-infected Liver Tissue. (liver) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR343332(GSM796035) "KSHV (HHV8), EBV (HHV-4)". (cell line) | SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) | SRR189783 | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | GSM956925PAZD5 | SRR040039(GSM532924) G531T. (cervix) | SRR037941(GSM510479) 293DroshaTN. (cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR330862(SRX091700) tissue: skin psoriatic involveddisease state:. (skin) | SRR343335 | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | GSM541796(GSM541796) undifferentiated human embryonic stem cells. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR330876(SRX091714) tissue: skin psoriatic involveddisease state:. (skin) | SRR330886(SRX091724) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR330859(SRX091697) tissue: skin psoriatic involveddisease state:. (skin) | SRR029125(GSM416754) U2OS. (cell line) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................CCTCCCCCCTTGTCCCTTCCAGT................................................. | 23 | 10.00 | 0.00 | - | - | 1.00 | - | - | 2.00 | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................GTGCAGGGGGCAGAGAGGT................................................................................................................................................. | 19 | 7.00 | 0.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................CCTCCCCCCTTGTCCCTTCCAGA................................................. | 23 | 4.00 | 0.00 | - | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................CATCACCAAGGAACACATCCAGGCC................................................................................................................................................................. | 25 | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................CAGGCACTGAGCAGCTCTGACCTCCC.................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................TCACCAAGGAACACATCCAG.................................................................................................................................................................... | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................TGCAGGGGGCAGAGAGGCGGGGGT........................................................................................................................................... | 24 | 2.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TGCAGGGGGCAGAGAGGCGGGTGTCA......................................................................................................................................... | 26 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..............................................................................................................................................CCTCCCCCCTTGTCCCTTC..................................................... | 19 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................CCTCCCCCCTTGTCCCTTCCA................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...................................................TGCAGGGGGCAGAGAGGCGGGGG............................................................................................................................................ | 23 | 2.00 | 0.00 | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TGCAGGGGGCAGAGAGTTTT............................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................CCTCCCCCCTTGTCCCTTCTTT.................................................. | 22 | 1 | 1.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TGAAGACCGGCGAGCACA......................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TGCTGGCGCATCGGCCATGGCT.......................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGCAGGGGGCAGAGAGGCGGGGGG........................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................GCAGGGGGCAGAGAGGTGA............................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................ACACATCCAGGTGCAGGGGGCAGAGAGGC................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................GGCACTGAGCAGCTCTGACC...................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGCAGGGGGCAGAGAGGCGGGGGTC.......................................................................................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TGCAGGGGGCAGAGAGGCGGGTTT........................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................TGACCTCCCCCCTTGTCCCTTCT.................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ........................................................................................................................................................................TGCTGAAGACCGGCGAGCA........................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGCAGGGGGCAGAGAGGCG................................................................................................................................................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................................................................GCTCTGACCTCCCCCGGC............................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...AGTTGCTGGCGCATCGGCCATGGCCC......................................................................................................................................................................................... | 26 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................TGGGTAACCCAGGGCAGGCACT.................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................CAGGCACTGAGCAGCTCTGAC....................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................TGCAGGGGGCAGAGAGGCGGGA............................................................................................................................................. | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................TCTGAGGGAGCACAGGAG.......................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TGCAGGGGGCAGAGAGGCGGGTG............................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ACCGGCGAGCACACTTGGTCCCT............... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................TCCCCCCTTGTCCCTTCCAG.................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................CACAGAGGCCTGGCTGGTGCCGGTG......................................................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................ACAGAGGCCTGGCTGGTGCCTGGAC........................................................................................................ | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TGCAGGGGGCAGAGAGGCGAA.............................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................................................................................................................................................................TGCTGAAGACCGGCGAGC............................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..........................................................................TCTGAGGGAGCACAGAGGCCTGGCTG.................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGCAGGGGGCAGAGAGGCGGGTGCCT......................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................CCCAGGGCAGGCACTTGCT................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................CCCCTTGTCCCTTCCAGGC................................................ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................GAAGACCGGCGAGCACACTTG..................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............ATCGGCCATGGCTCATCACC................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ACAAGTTGCTGGCGCATCGGCCATGGCTCATCACCAAGGAACACATCCAGGTGCAGGGGGCAGAGAGGCGGGTGTCTGAGGGAGCACAGAGGCCTGGCTGGTGCCTGGTGGGTAACCCAGGGCAGGCACTGAGCAGCTCTGACCTCCCCCCTTGTCCCTTCCAGGCCTTGCTGAAGACCGGCGAGCACACTTGGTCCCTGGCCGAGCTCATTCA ...................................................((.((((((((.((.((.(((.(((.(((...((.(((..(((((.((((((((.....)))).))..)).))))).))).))..))).)))..))))))))))))))).))................................................... ..................................................51...............................................................................................................164................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR207113(GSM721075) IP against AGO 1 & 2. (ago1/2 cell line) | SRR189786 | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR189787 | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR189782 | SRR330865(SRX091703) tissue: skin psoriatic involveddisease state:. (skin) | SRR037936(GSM510474) 293cand1. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | SRR040008(GSM532893) G727N. (cervix) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR029126(GSM416755) 143B. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR033728(GSM497073) MALT (MALT413). (B cell) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | SRR363674(GSM830251) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast) | SRR343334 | SRR330914(SRX091752) tissue: normal skindisease state: normal. (skin) | SRR039614(GSM531977) HBV-infected Liver Tissue. (liver) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR343332(GSM796035) "KSHV (HHV8), EBV (HHV-4)". (cell line) | SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin) | SRR189783 | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | GSM956925PAZD5 | SRR040039(GSM532924) G531T. (cervix) | SRR037941(GSM510479) 293DroshaTN. (cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR330862(SRX091700) tissue: skin psoriatic involveddisease state:. (skin) | SRR343335 | SRR060168(GSM565978) 5-8F_nucleus. (cell line) | GSM541796(GSM541796) undifferentiated human embryonic stem cells. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR330876(SRX091714) tissue: skin psoriatic involveddisease state:. (skin) | SRR330886(SRX091724) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR330859(SRX091697) tissue: skin psoriatic involveddisease state:. (skin) | SRR029125(GSM416754) U2OS. (cell line) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................GACCGGCGAGCACACGTG..................... | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................GTTCCTTGGTGATGA............................................................................................................................................................................ | 15 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 |