ID: uc001bps.2_intron_0_0_chr1_28586449_f.3p
GENE: (1)
chr1:28595494-28595743+


(2)
AGO2.ip 		(2)
B-CELL 		(9)
BREAST 		(17)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(4)
OTHER 		(2)
RRP40.ip 		(12)
SKIN 		(1)
XRN.ip

Sense strand
AGCCTGGAGTGAGCCCTCTTTCTTGATTACCCTTCCAAACATGTGTATATCTCCCATCTGGCTCCACCATCCAAAGTATGCTAGAAAGGTGGGTTTAACACTTCAGTGTAGCCCCTTGGATAGGAGGAAGAGGCTGGATAGGTAATAATCCTCTTTATTCTCCCTTCTACTACGGACTAACCTCATATGTTTCCTCCCAGGAGCAGAGGGAGAGCCGGGCTCGGCGAGGCCCTCGAGGGCCCAGCGCCTT
.................................................................................................................((.(((.(((((((..(((..((((.(((.......))).))))..))))))))))))).))...........................................................................
...............................................................................................................112.....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786TAX577589(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)
.................................................................................................................................................................................TAACCTCATATGTTTCCTCCCAGA.................................................24112.004.00-5.00--------1.00----1.00---1.001.001.00--------1.00---------------1.00-----
................................................................................................................................................................................CTAACCTCATATGTTTCCTCCCAGA.................................................258.000.002.00-2.00------2.00----------------------------1.00---------1.00---
.................................................................................................................................................................................TAACCTCATATGTTTCCTCCCAGAA................................................2517.004.003.00-2.00---1.00-------1.00-------------------------------------
...........................................................................................................................................................................ACGGACTAACCTCATATGTTTCCTCCCAG..................................................2915.005.00------------2.00---------------------------1.00--1.00-----1.00--
................................................................................................................................................................................CTAACCTCATATGTTTCCTCCCAGAA................................................264.000.00-1.00--1.00---------------------------------------1.00--1.00----
.................................................................................................................................................................................TAACCTCATATGTTTCCTCCCAG..................................................2314.004.00-----------------1.00----------1.00----1.00-----------1.00------
.................................................................................................................................................................................TAACCTCATATGTTTCCTCCCAGAATA..............................................2714.004.004.00---------------------------------------------------
....................................................................................................................................................................................................CCAGGAGCAGAGGGAGAGC...................................1923.003.00---3.00------------------------------------------------
..........................................................................................................................................................................TACGGACTAACCTCATATGTTTCCTCC.....................................................2712.002.00-------------2.00--------------------------------------
.............................................................................................................................................................TTCTCCCTTCTACTACTACC.........................................................................202.000.00-----2.00----------------------------------------------
...........................................................................................................................................................................ACGGACTAACCTCATATGTTTCCTCCCAGA.................................................3012.005.001.00------------------------------1.00--------------------
................................................................................................................................................................................CTAACCTCATATGTTTCCTCCCAGGA................................................2612.002.00----2.00-----------------------------------------------
...........................................................................................................................................................................ACGGACTAACCTCATATGTTTCCTCCC....................................................2712.002.00--------2.00-------------------------------------------
...................................................................................................................................................................CTTCTACTACGGACTAACC....................................................................1911.001.00----------------------------------1.00-----------------
...............CTCTTTCTTGATTACTCAA........................................................................................................................................................................................................................191.000.00---------------------------1.00------------------------
......................................................................................................................................................................................................AGGAGCAGAGGGAGAGCCGGGCTCGGCG........................2811.001.00------------------------------------------1.00---------
......................................................................................................................................................................................................................CCGGGCTCGGCGAGGCCC..................1821.001.00----------1.00-----------------------------------------
..................................................................................................................................................................CCTTCTACTACGGACTA.......................................................................1711.001.00-------------------------------------1.00--------------
......................................................................................................TCAGTGTAGCCCCTTGGATAGGAGGAAGAGG.....................................................................................................................3111.001.00--------------------------------1.00-------------------
...........................................................................................................................................................TATTCTCCCTTCTACCGAT............................................................................191.000.00-------------------------1.00--------------------------
..................................................................................................................................................................................................................AGAGCCGGGCTCGGCGAGGCT...................211.000.00------1.00---------------------------------------------
..........................................................................................................................................................................TACGGACTAACCTCATATGTTTCCTCCCAGAA................................................321.000.00--------------------------1.00-------------------------
....................................................................................................................TGGATAGGAGGAAGAGGCTGGATA..............................................................................................................2411.001.00-----------------------------1.00----------------------
............................................................................................................................................................ATTCTCCCTTCTACTACGGACTA.......................................................................2311.001.00-------1.00--------------------------------------------
.............................................................................................................................................................TTCTCCCTTCTACTACGGACTA.......................................................................2211.001.00-------1.00--------------------------------------------
.......................................................................................................................ATAGGAGGAAGAGGCTGGATAGGCA..........................................................................................................251.000.00-----------1.00----------------------------------------
...........................................................................................................................................................................................................CAGAGGGAGAGCCGGGTAC............................191.000.00----------------1.00-----------------------------------
....................................................................................................................................................................TTCTACTACGGACTA.......................................................................1511.001.00------------------------1.00---------------------------
..............................................................................................................................................................................................................AGGGAGAGCCGGGCTCGGCGAGGCCCCCG...............291.000.00-----------1.00----------------------------------------
.......................................................................................................................ATAGGAGGAAGAGGCGGAA................................................................................................................191.000.00-----------------------------------1.00----------------
................................................................................................................................................................................CTAACCTCATATGTTTCCTCCC....................................................2211.001.00-----------------------1.00----------------------------
............................................................................................................................AGGAAGAGGCTGGATTTT............................................................................................................181.000.00---------------------------------------------------1.00
.................................................................................................................................................................................TAACCTCATATGTTTCCTCCCAGTA................................................2511.004.00------------------1.00---------------------------------
................................................................................................................................................ATAATCCTCTTTATTCTCCCTTCTACTACG............................................................................3011.001.00--------------------------------------------------1.00-
............................................................................................................................................................................CGGACTAACCTCATATGTTTCCTCCCAGA.................................................291.000.00---------------------------------------1.00------------
...................................................................................................................................................................CTTCTACTACGGACTA.......................................................................1611.001.00-----------------------------------------1.00----------
......................................................................................................................................................................................................AGGAGCAGAGGGAGAGC...................................1760.170.17---------------0.17------------------------------------

Antisense strand
AGCCTGGAGTGAGCCCTCTTTCTTGATTACCCTTCCAAACATGTGTATATCTCCCATCTGGCTCCACCATCCAAAGTATGCTAGAAAGGTGGGTTTAACACTTCAGTGTAGCCCCTTGGATAGGAGGAAGAGGCTGGATAGGTAATAATCCTCTTTATTCTCCCTTCTACTACGGACTAACCTCATATGTTTCCTCCCAGGAGCAGAGGGAGAGCCGGGCTCGGCGAGGCCCTCGAGGGCCCAGCGCCTT
.................................................................................................................((.(((.(((((((..(((..((((.(((.......))).))))..))))))))))))).))...........................................................................
...............................................................................................................112.....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786TAX577589(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)
....TGGAGTGAGCCCTCTCCTC................................................................................................................................................................................................................................... 191.000.00----------------------1.00-----------------------------
.........................................................................................................................................................................................................................................CGAGGGCCCAGCGCCGGA 181.000.00------------------------------------1.00---------------