ID: uc001bpd.1_intron_0_0_chr1_28218759_r.3p
GENE: (8)
chr1:28218709-28218958-


(1)
B-CELL 		(2)
BRAIN 		(14)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
TESTES

Sense strand
CTCCATGAATAAGCTCTGTTTTGCTATTTTACTGGCATTTCTCCCTGTGAGAGCTTTCTATGTGCAGAATACTTGTGAATTCTTAGCTAAGGTAGAAAGTTGGGAGATAAGCGAAGTTTGCATATTTGGCCATATCCAAAAGGCAGTTTCCTTCTGAATTGGCCTGAAAATGACCTTTTTTTTTTCTTCTTTCTTTCTAGGCAAGCTGTGGATTTTCTGAGCAATGAGGGGCACATCTATTCTACTGTGG
............................................................................................(((((((..((((((.(((.((((....(((.((((((((....((.((((......)))).))...))))).))).)))..)))).)))..))))))..)))))))...................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189784SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................TTTTTCTTCTTTCTTTCTAG..................................................2024.004.00------4.00--------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTTAAG.......................................................233.000.002.001.00-------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTAATG......................................................233.000.00---1.001.00---1.00------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTAAG........................................................213.000.00-2.00--1.00----------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTTCTTTCTAG..................................................2813.003.00--2.00-1.00----------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTTCTTTCCAGG.................................................293.000.003.00--------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTCTTTG.....................................................242.000.00-1.001.00------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTCGC.......................................................222.000.002.00--------------------------------
..................................................................................................................................................................................TTTTTTTCTTCTTTCTTTTAAG..................................................222.000.00-2.00-------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTAAG.......................................................222.000.00--1.00-1.00----------------------------
......................................................................................................................................................................................................................TTCTGAGCAATGAGGGGCACATCTATTCCACT....322.000.00-----2.00---------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTTTTGG......................................................242.000.002.00--------------------------------
.............................................................................................................................TTGGCCATATCCAAAAGGCAGTTTCCTTCTGAATTGGCCTGAAAATGACCTTTTTTTTTTCTTCTTTCTTTCTAG..................................................7512.002.00-------2.00-------------------------
.................................................................................................................................................................................TTTTTTTTCTTCTTTCTTTCTTTCG................................................252.000.00--1.001.00-----------------------------
......................................................................................................................................................................................................................TTCTGAGCAATGAGGGGCACATCTATTCTACTG...3311.001.00---1.00-----------------------------
.................................................................................................................................................................................TTTTTTTTCTTCTTTCTTTAGGC..................................................231.000.001.00--------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCCAGG.........................................................211.000.001.00--------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCCTGG.........................................................211.000.00-1.00-------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTTCTA.......................................................231.000.001.00--------------------------------
................................................................................................................................................................................TTTTTTTTTCTTCTTTCTTGG.....................................................211.000.001.00--------------------------------
...............................................................................................................................................................................TTTTTTTTTTCTTCTTTCTTTCTTTTG................................................271.000.00----1.00----------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCAGG......................................................221.000.001.00--------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCGGG..........................................................201.000.001.00--------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTAG.........................................................201.000.00--1.00------------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCCCCC.....................................................231.000.001.00--------------------------------
................................................................................................................................................................................................................................TGAGGGGCACATCTATTCTACTGTGG2611.001.00--------------1.00------------------
......................................................................................................................................................................................TTTCTTCTTTCTTTCTAAG.................................................191.000.00---1.00-----------------------------
..................................................................................................................................................................................TTTTTTTCTTCTTTCTTTCTTAG.................................................231.000.00--------1.00------------------------
...........................................................................................................................................................................................................AGCTGTGGATTTTCTGAGCAATGAGGGGCACA...............3221.001.00---------------------0.50----0.50------
..........................................................................................................................................................................TGACCTTTTTTTTTTCTTCTTTTTG.......................................................251.000.001.00--------------------------------
..................................................................................................................................................................................TTTTTTTCTTCTTTCTTTCCTG..................................................221.000.00--1.00------------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTCAG.....................................................231.000.00-1.00-------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTTAA........................................................221.000.001.00--------------------------------
................................................................................................................................................................................TTTTTTTTTCTTCTTTCTTTCAG...................................................231.000.00--1.00------------------------------
...............................................................................................................................................................................TTTTTTTTTTCTTCTTTCTTTTTAG..................................................251.000.00---1.00-----------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTTTCTTTTG................................................281.000.00--1.00------------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTTCAG....................................................241.000.00--1.00------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTTTTGA......................................................241.000.001.00--------------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTTAATG...................................................251.000.00-1.00-------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTCTTG........................................................221.000.00-----1.00---------------------------
.......................................................................................................................................................................AAATGACCTTTTTTTAGT.................................................................181.000.001.00--------------------------------
................................................................................................................................................................................................................TGGATTTTCTGAGCAGGAA.......................191.000.00-------------1.00-------------------
.........................................................................................................................................................................ATGACCTTTTTTTTTTCGG..............................................................191.000.00-----1.00---------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTTTG.....................................................231.000.00-----------1.00---------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTTTCCAG..................................................261.000.00-1.00-------------------------------
.................................................................................................................................................................................TTTTTTTTCTTCTTTCTCTAG....................................................211.000.00--1.00------------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTTACAG...................................................251.000.00-1.00-------------------------------
..........................................................................................................................................................................TGACCTTTTTTTTTTCTTTGGG..........................................................221.000.001.00--------------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTTTTAG...................................................251.000.001.00--------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTTTAAG......................................................241.000.001.00--------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTGGG...........................................................191.000.00---------------1.00-----------------
................................................................................................................................................................................TTTTTTTTTCTTCTTTCTTTGGAG..................................................241.000.001.00--------------------------------
...................................................................................................................................................................................TTTTTTCTTCTTTCTTTCCATA.................................................221.000.00-------------------1.00-------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTTTG.......................................................221.000.00--1.00------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTCTAAT.....................................................241.000.00---1.00-----------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTCTG.......................................................221.000.00--1.00------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTTAAG......................................................231.000.00---1.00-----------------------------
...................................................................................................................................................................................TTTTTTCTTCTTTCTTTCTATCAG...............................................241.000.00----1.00----------------------------
...............................................................................................AAAGTTGGGAGATAAGCGAAG......................................................................................................................................2111.001.00----------------1.00----------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCCAG......................................................221.000.00-1.00-------------------------------
...............................................................................................................................................................................................................GTGGATTTTCTGAGCAGGTA.......................201.000.00------------------1.00--------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCCAG..........................................................201.000.00---------1.00-----------------------
..........................................................................................................................................................................TGACCTTTTTTTTTTCGGG.............................................................191.000.001.00--------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTCTGTG.....................................................241.000.00-1.00-------------------------------
............................................................................................................................................................................ACCTTTTTTTTTTCTTCTTG..........................................................201.000.00-1.00-------------------------------
..............................................................................................................................................................................CTTTTTTTTTTCTTCTTTCTTTTTTG..................................................261.000.00-1.00-------------------------------
.............................................................................................................................................................................CCTTTTTTTTTTCTTCTTTTCTT......................................................231.000.00---1.00-----------------------------
..................................................................................................................................................................................TTTTTTTCTTCTTTCTTTCTATG.................................................231.000.00-1.00-------------------------------
...............................................................................................................................................................................TTTTTTTTTTCTTCTTTCTTTTAG...................................................241.000.001.00--------------------------------
.........................................................................................................................................................................ATGACCTTTTTTTTTTCTAGTT...........................................................221.000.001.00--------------------------------
..................TTTTGCTATTTTACTCTTC.....................................................................................................................................................................................................................191.000.00---1.00-----------------------------
...............................................................................................................................................................................TTTTTTTTTTCTTCTTTCTTTCTAG..................................................2511.001.00--------------------1.00------------
...................................................................................................................................................................................TTTTTTCTTCTTTCTTTCTATCCG...............................................241.000.00--1.00------------------------------
........................................................................................................................................................................................................GCAAGCTGTGGATTTTCTGAGCAATG........................2630.670.67----------------------0.67----------
......................................................................................................................................................................................................................TTCTGAGCAATGAGGGGCACAT..............2220.500.50-----------------------0.50---------
......................................................................................................................................................................................................................TTCTGAGCAATGAGGGGCACATCTA...........2520.500.50------------------------0.50--------
.....................................................................................................................................................................................................................TTTCTGAGCAATGAGGGGCACAT..............2320.500.50------------0.50--------------------
......................................................................................................................................................................................................................TTCTGAGCAATGAGGGGCACATCT............2420.500.50-------------------------0.50-------
.......................................................................................................................................................................................................................TCTGAGCAATGAGGGGCACATCT............2320.500.50---------------------------0.50-----
.....................................................................................................................................................................................................................TTTCTGAGCAATGAGGGGCACATCTATT.........2820.500.50------------0.50--------------------
........................................................................................................................................................................................................GCAAGCTGTGGATTTTC.................................1730.330.33----------------------------0.33----
........................................................................................................................................................................................................GCAAGCTGTGGATTTTCTGAG.............................2130.330.33---------------------0.33-----------
......................................................................................................................................................................................................................TTCTGAGCAATGAGGGGCAC................2030.330.33------------------------------0.33--
.............................................................................................................................................................................................................CTGTGGATTTTCTGAGCAATGAGG.....................2430.330.33-----------------------------0.33---
........................................................................................................................................................................................................GCAAGCTGTGGATTTTCT................................1830.330.33-------------------------------0.33-
.......................................................................................................................................................................................................................TCTGAGCAATGAGGGGC..................1740.250.25--------------------------------0.25
...............................................................................................................................................................................TTTTTTTTTTCTTCTTTCTTTC.....................................................2270.140.140.14--------------------------------

Antisense strand
CTCCATGAATAAGCTCTGTTTTGCTATTTTACTGGCATTTCTCCCTGTGAGAGCTTTCTATGTGCAGAATACTTGTGAATTCTTAGCTAAGGTAGAAAGTTGGGAGATAAGCGAAGTTTGCATATTTGGCCATATCCAAAAGGCAGTTTCCTTCTGAATTGGCCTGAAAATGACCTTTTTTTTTTCTTCTTTCTTTCTAGGCAAGCTGTGGATTTTCTGAGCAATGAGGGGCACATCTATTCTACTGTGG
............................................................................................(((((((..((((((.(((.((((....(((.((((((((....((.((((......)))).))...))))).))).)))..)))).)))..))))))..)))))))...................................................
..........................................................................................91...........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189784SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................AAAATGACCTTTTTTTTAGTC............................................................... 211.000.00----------1.00----------------------
.....................................................................TACTTGTGAATTCTTAAAA.................................................................................................................................................................. 191.000.00-----------------1.00---------------