ID: uc001bon.1_intron_1_0_chr1_27994887_r
GENE: IFI6(3)
chr1:27994837-27995018-


(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(4)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(2)
OTHER 		(21)
SKIN

Sense strand
CAGCGGCTCCGGGTTCTGGAAGGCCCTGACCTTCATGGCCGTCGGAGGAGGTGGGTCTGGAGGGCGAGGATCTCGGGCAGGCGGGGCGGGCCTCTGCCGCGGACGCTCCCTCACCTGCTCCTGTTCCTCCAGGACTCGCAGTCGCCGGGCTGCCCGCGCTGGGCTTCACCGGCGCCGGCATC
.........................................................(((((((..((((......(((((.((((.((((.((((...)))).)))))))).)))))))))..)))))))...................................................
.........................................................58..............................................................................138..........................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038856(GSM458539)
D11. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
...........................GACCTTCATGGCCGTCGG.........................................................................................................................................1814.004.001.001.00------------2.00------------------------------------------
..............................................................GGCGAGGATCTCGGGCAGG.....................................................................................................1914.004.002.00-1.001.00-----------------------------------------------------
.........................................................TGGAGGGCGAGGATCCAT...........................................................................................................184.000.00-------------------1.00-----1.00------------------1.00--------1.00---
...................AAGGCCCTGACCTTCATGGCCGTCGGAGGAG....................................................................................................................................3113.003.002.00---------------1.00----------------------------------------
..............................................................GGCGAGGATCTCGGGCAGGC....................................................................................................2013.003.002.00-1.00------------------------------------------------------
..............................................................GGCGAGGATCTCGGGCAGGCGGG.................................................................................................2313.003.00---1.00--2.00--------------------------------------------------
...............................................................GCGAGGATCTCGGGCAGGC....................................................................................................1913.003.00-----3.00---------------------------------------------------
...............................................................................................................CACCTGCTCCTGTTCCTCCAGAT................................................232.000.00-----------2.00---------------------------------------------
...............................................................................................................CACCTGCTCCTGTTCCTCCAGA.................................................222.000.00-------1.00------------1.00------------------------------------
..............................................................GGCGAGGATCTCGGGCAGGCG...................................................................................................2112.002.001.00------------------------------1.00-------------------------
..............................................................................................................TCACCTGCTCCTGTTCCTCC....................................................2012.002.00---2.00-----------------------------------------------------
...............................................................GCGAGGATCTCGGGCAGGCGGG.................................................................................................2212.002.00------------2.00--------------------------------------------
.................................CATGGCCGTCGGAGGAG....................................................................................................................................1712.002.00---------1.00-----------------------------------------1.00-----
................................................................CGAGGATCTCGGGCAGGCGG..................................................................................................2012.002.002.00--------------------------------------------------------
............................ACCTTCATGGCCGTCG..........................................................................................................................................1612.002.00-2.00-------------------------------------------------------
................................................................CGAGGATCTCGGGCAGG.....................................................................................................1712.002.002.00--------------------------------------------------------
...CGGCTCCGGGTTCTGG...................................................................................................................................................................1612.002.00-1.00-------------------1.00-----------------------------------
.................................CATGGCCGTCGGAGGAGGAC.................................................................................................................................202.000.001.00----------------------------------------------1.00---------
..................................................................................................................................AGGACTCGCAGTCGCCGGGCTG..............................2212.002.002.00--------------------------------------------------------
.AGCGGCTCCGGGTTCTGGAAGGC..............................................................................................................................................................2312.002.002.00--------------------------------------------------------
.AGCGGCTCCGGGTTCTGGAA.................................................................................................................................................................2012.002.002.00--------------------------------------------------------
...............................TTCATGGCCGTCGGAGGA.....................................................................................................................................1812.002.002.00--------------------------------------------------------
......................................................................................................ACGCTCCCTCACCTGCTCCTGTT.........................................................2311.001.00-------------1.00-------------------------------------------
..................................ATGGCCGTCGGAGGA.....................................................................................................................................1511.001.00--------1.00------------------------------------------------
....GGCTCCGGGTTCTGGAAGG...............................................................................................................................................................1911.001.00------------------------------1.00--------------------------
...............................................................GCGAGGATCTCGGGCAGGCG...................................................................................................2011.001.00----------1.00----------------------------------------------
.........................................................TGGAGGGCGAGGATCC.............................................................................................................161.000.00---------------------------------------1.00-----------------
...............................TTCATGGCCGTCGGAGGAGGA..................................................................................................................................211.000.00-----------------------1.00---------------------------------
...................................................................................................................................GGACTCGCAGTCGCCGGGCTGCCC...........................2411.001.001.00--------------------------------------------------------
............................................................................................................CCTCACCTGCTCCTGTCTG.......................................................191.000.00----------------------------------1.00----------------------
........................................GTCGGAGGAGGTGGGT..............................................................................................................................1611.001.00---1.00-----------------------------------------------------
...........................................................................................................................................AGTCGCCGGGCTGCCCGCGCT......................2111.001.00------------------------------------------------1.00--------
.....GCTCCGGGTTCTGGAAGGCC.............................................................................................................................................................2011.001.00-------------------------------------1.00-------------------
................................TCATGGCCGTCGGAGGAGG...................................................................................................................................1911.001.001.00--------------------------------------------------------
...................................TGGCCGTCGGAGGAGGAC.................................................................................................................................181.000.00--1.00------------------------------------------------------
...........................................................................................................................................AGTCGCCGGGCTGCCCGC.........................1811.001.00------------------------------------1.00--------------------
..............................................................................................................TCACCTGCTCCTGTTCCTCCA...................................................2111.001.00-----------------------------------------1.00---------------
........................................................................................................................................CGCAGTCGCCGGGCTGCCCGCGC.......................2311.001.00--1.00------------------------------------------------------
..................................................GTGGGTCTGGAGGGCGA...................................................................................................................1711.001.00-----------------------------1.00---------------------------
...........................................................................................................................................AGTCGCCGGGCTGCCCGCGCTGGGC..................2511.001.00-1.00-------------------------------------------------------
...CGGCTCCGGGTTCTG....................................................................................................................................................................1511.001.00-1.00-------------------------------------------------------
....................AGGCCCTGACCTTCATGGCCGTCGGAGGAG....................................................................................................................................3011.001.001.00--------------------------------------------------------
................................................................CGAGGATCTCGGGCAGGCGGAA................................................................................................2211.002.00----------1.00----------------------------------------------
......................................................................................................ACGCTCCCTCACCTGCTCCTG...........................................................2111.001.00--------------------------------------------------1.00------
...................AAGGCCCTGACCTTCATGGCCGTCGGAG.......................................................................................................................................2811.001.00-1.00-------------------------------------------------------
..............................................................GGCGAGGATCTCGGGCAGGCAA..................................................................................................2211.003.00---1.00-----------------------------------------------------
.................GGAAGGCCCTGACCTTCATGGCCGTCGGAGGAGGA..................................................................................................................................351.000.001.00--------------------------------------------------------
.....................GGCCCTGACCTTCATGGCCGTCGGAGGAGGACTC...............................................................................................................................341.000.001.00--------------------------------------------------------
..GCGGCTCCGGGTTCTT....................................................................................................................................................................161.000.00----------------------------------------------1.00----------
..................................ATGGCCGTCGGAGGAGGA..................................................................................................................................181.000.00---------1.00-----------------------------------------------
.......................................................................CTCGGGCAGGCGGGGCGGGCCTCT.......................................................................................2411.001.00----1.00----------------------------------------------------
................................................................................................................................................CCGGGCTGCCCGCGCGCTA...................191.000.00------1.00--------------------------------------------------
..............................................................................................................TCACCTGCTCCTGTTCCTCCAG..................................................2211.001.00----------------------1.00----------------------------------
..............................................................................................................TCACCTGCTCCTGTTCCTCCAGA.................................................2311.001.00--------------------------------1.00------------------------
..............................................................GGCGAGGATCTCGGGCAGGCGG..................................................................................................2211.001.00----1.00----------------------------------------------------
..................................................GTGGGTCTGGAGGGCGAGGATCT.............................................................................................................2311.001.00-------1.00-------------------------------------------------
................................TCATGGCCGTCGGAGGAGGA..................................................................................................................................2011.001.001.00--------------------------------------------------------
...........................GACCTTCATGGCCGTCGGAG.......................................................................................................................................2011.001.00-1.00-------------------------------------------------------
..............................CTTCATGGCCGTCGG.........................................................................................................................................1511.001.00------------------------1.00--------------------------------
....GGCTCCGGGTTCTGGAAG................................................................................................................................................................1811.001.00--1.00------------------------------------------------------
...CGGCTCCGGGTTCTGGAAGGCCCTGACC.......................................................................................................................................................2811.001.00------------------------------------------1.00--------------
..............................CTTCATGGCCGTCGGAGGAGGACTC...............................................................................................................................251.000.00--------------------------------------1.00------------------
......................................................................................................................................................................CACCGGCGCCGGCATC1611.001.00-------1.00-------------------------------------------------
.........................................................TGGAGGGCGAGGATCTCGGGCAGGC....................................................................................................2511.001.00----1.00----------------------------------------------------
..............................................................GGCGAGGATCTCGGGCAGGCGGCA................................................................................................2411.001.00-------------1.00-------------------------------------------
..............................................................GGCGAGGATCTCGGGCAGGA....................................................................................................2011.004.00-------------------------------------------------1.00-------
..............................................................GGCGAGGATCTCGGGCAGGCGTAT................................................................................................2411.002.00-------------------------------------------1.00-------------
..................................................................................................................................AGGACTCGCAGTCGCCGG..................................1811.001.00--1.00------------------------------------------------------
.......................................................................................................................................TCGCAGTCGCCGGGCTGCCCGCGCTGGGC..................2911.001.00----------------------------------------1.00----------------
..............................................................GGCGAGGATCTCGGGCAGGCGGA.................................................................................................2311.001.00---------------------------------1.00-----------------------
..................................................................................................................................AGGACTCGCAGTCGCCGGGCTGCCCGCGC.......................2911.001.00--1.00------------------------------------------------------
..................................................................................................................................AGGACTCGCAGTCGCCGGGCTGCCCG..........................2611.001.00-1.00-------------------------------------------------------
......................................................................................................ACGCTCCCTCACCTGCTCCTGTA.........................................................2311.001.00---------------------------1.00-----------------------------
...CGGCTCCGGGTTCTGGAAGGC..............................................................................................................................................................2111.001.00-----------------1.00---------------------------------------
......................................................................................................ACGCTCCCTCACCTGCTCCTGT..........................................................2211.001.00--------------------------1.00------------------------------
..............................................................................AGGCGGGGCGGGCCTGGTT.....................................................................................191.000.00----------------------------------------------------1.00----
..............TCTGGAAGGCCCTGACCTTCATGGC...............................................................................................................................................2511.001.00---------------1.00-----------------------------------------
..........................................................................................................................................CAGTCGCCGGGCTGCCCGCG........................2011.001.001.00--------------------------------------------------------
..............................................................GGCGAGGATCTCGGGCAGGCGGGGT...............................................................................................251.000.00---1.00-----------------------------------------------------
..............................................................GGCGAGGATCTCGGGCAGGCGGT.................................................................................................2311.001.001.00--------------------------------------------------------
............GTTCTGGAAGGCCCTGACCTTCATGGCCGTCG..........................................................................................................................................3211.001.00--------1.00------------------------------------------------
....................AGGCCCTGACCTTCATGGCCGTCGG.........................................................................................................................................2511.001.00-1.00-------------------------------------------------------
........................................................................................................................................CGCAGTCGCCGGGCTG..............................1620.500.50--------0.50------------------------------------------------
...........GGTTCTGGAAGGCCCTGA.........................................................................................................................................................1820.500.50------------------------------------------------------0.50--
............GTTCTGGAAGGCCCTGA.........................................................................................................................................................1720.500.500.50--------------------------------------------------------
......CTCCGGGTTCTGGAAG................................................................................................................................................................1640.250.25--------------------------------------------------------0.25
..................................................GTGGGTCTGGAGGGCG....................................................................................................................1640.250.25---------0.25-----------------------------------------------
........................................................CTGGAGGGCGAGGAT...............................................................................................................1580.250.25------------------------------------------------------0.25--
.............TTCTGGAAGGCCCTGA.........................................................................................................................................................1640.250.25-------------------------------------------------------0.25-
..............................................................................................................................................CGCCGGGCTGCCCGC.........................1550.200.20--0.20------------------------------------------------------

Antisense strand
CAGCGGCTCCGGGTTCTGGAAGGCCCTGACCTTCATGGCCGTCGGAGGAGGTGGGTCTGGAGGGCGAGGATCTCGGGCAGGCGGGGCGGGCCTCTGCCGCGGACGCTCCCTCACCTGCTCCTGTTCCTCCAGGACTCGCAGTCGCCGGGCTGCCCGCGCTGGGCTTCACCGGCGCCGGCATC
.........................................................(((((((..((((......(((((.((((.((((.((((...)))).)))))))).)))))))))..)))))))...................................................
.........................................................58..............................................................................138..........................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038856(GSM458539)
D11. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
..................ATGAAGGTCAGGGCCTTC.................................................................................................................................................. 1812.002.00------------------1.00---------1.00----------------------------
................................TCATGGCCGTCGGAGGGA.................................................................................................................................... 181.000.00---------------------------------------------1.00-----------
..............................................................................................................................................CGCCGGGCTGCCCGCGGG...................... 181.000.00-----------------------------------1.00---------------------