ID: uc001boi.2_intron_1_0_chr1_27939862_r.3p
GENE: (3)
chr1:27939812-27940061-


(1)
AGO1.ip
(2)
AGO2.ip
(1)
B-CELL
(3)
BRAIN
(3)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(3)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
TTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACTGCGCCCAGACCCCATTCTCTTAATCCAGCTGTTTCCAGGGACCCCCTCACTAACTTTCCCTGCTCCCCCATCTTCTCCAGGTTCCAAGTTCCCCATCAAGTGGACAGCCCCAGAAGCTGCCCTCTTTGGC
........................................................((.((.((..(((((((....(((((((....))).)).))..))))))).)).)).)).......................................................................................................................................
..................................................51..................................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR189786SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040043(GSM532928)
G428T. (cervix)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189785SRR343335
...........................................................................................AAGTGCTGGGATTACAGACGAACC.......................................................................................................................................245.000.001.004.00--------------------------------
............................................................................................AGTGCTGGGATTACAGACGAGCT.......................................................................................................................................234.000.003.001.00--------------------------------
........................................................................................................ACAGACGTGAGCCACTGCGCCGGCC.........................................................................................................................254.000.002.002.00--------------------------------
...........GTAGAGACAGGGTTTCGCCAAGAA.......................................................................................................................................................................................................................243.000.00--3.00-------------------------------
........TTAGTAGAGACAGGGTTTAAG.............................................................................................................................................................................................................................213.000.00--3.00-------------------------------
.......TTTAGTAGAGACAGGGTTTAGA.............................................................................................................................................................................................................................223.000.00--3.00-------------------------------
..........AGTAGAGACAGGGTTTAGAA............................................................................................................................................................................................................................203.000.00--3.00-------------------------------
..GTATTTTTAGTAGAGACAGGGTAGA...............................................................................................................................................................................................................................252.000.00--2.00-------------------------------
.........................................................TGACCTCAAGTGATCCGCCTGCCCGG.......................................................................................................................................................................262.000.002.00---------------------------------
........................................................................................................ACAGACGTGAGCCACTGCGCCGGCT.........................................................................................................................252.000.002.00---------------------------------
..........................................................................................AAAGTGCTGGGATTACAGACGAGTC.......................................................................................................................................252.000.00-2.00--------------------------------
.....TTTTTAGTAGAGACAGGGTTTAACC............................................................................................................................................................................................................................252.000.00---2.00------------------------------
............................................................................................AGTGCTGGGATTACAGACGACCC.......................................................................................................................................232.000.001.001.00--------------------------------
............................................................................................AGTGCTGGGATTACAGACGAGCG.......................................................................................................................................232.000.002.00---------------------------------
.................................................................AGTGATCCGCCTGCCTTGGCCCGCC................................................................................................................................................................252.000.002.00---------------------------------
.........................................................TGACCTCAAGTGATCCGCCTGCAC.........................................................................................................................................................................241.000.00-----1.00----------------------------
....................................................................GATCCGCCTGCCTTGGAAAA..................................................................................................................................................................201.000.00------------------1.00---------------
.........................................................TGACCTCAAGTGATCCGCCATAA..........................................................................................................................................................................231.000.00-----------1.00----------------------
...........................................................................................AAGTGCTGGGATTACAGACGAGAC.......................................................................................................................................241.000.001.00---------------------------------
.......................................................................................................TACAGACGTGAGCCACTGCGCCGGC..........................................................................................................................251.000.001.00---------------------------------
............................................................................................AGTGCTGGGATTACAGACGAGAC.......................................................................................................................................231.000.00-1.00--------------------------------
.............................................................................................................CGTGAGCCACTGCGCCCAGAAGAA.....................................................................................................................241.000.00--------1.00-------------------------
........................................................................................................ACAGACGTGAGCCACTGCGCCCACCC........................................................................................................................261.000.001.00---------------------------------
................................................................AAGTGATCCGCCTGCCTTGGCCCCTG................................................................................................................................................................261.000.00-1.00--------------------------------
......TTTTAGTAGAGACAGGGTTTCGCACG..........................................................................................................................................................................................................................261.000.00-1.00--------------------------------
.................................................................AGTGATCCGCCTGCCTTGGCCTCTCCC..............................................................................................................................................................271.000.001.00---------------------------------
.........TAGTAGAGACAGGGTAGA...............................................................................................................................................................................................................................181.000.00----------------------1.00-----------
..........AGTAGAGACAGGGTTTCGCCTCG.........................................................................................................................................................................................................................231.000.00-1.00--------------------------------
........................................................................................................ACAGACGTGAGCCACTGCGCCCCCC.........................................................................................................................251.000.001.00---------------------------------
.........................................................TGACCTCAAGTGATCCGCAAT............................................................................................................................................................................211.000.00-----------------------1.00----------
.................................................................AGTGATCCGCCTGCCTTGGCCCTG.................................................................................................................................................................241.000.001.00---------------------------------
............................................................................................AGTGCTGGGATTACAGACGAGGC.......................................................................................................................................231.000.001.00---------------------------------
...........................................................................................AAGTGCTGGGATTACAGACGAGCT.......................................................................................................................................241.000.00-1.00--------------------------------
.........................TCGCCATGTTGGCCAGGCTGGCCGG........................................................................................................................................................................................................251.000.00-1.00--------------------------------
...........................................................................................AAGTGCTGGGATTACAGACGAGTC.......................................................................................................................................241.000.001.00---------------------------------
....................................................ACTCCTGACCTCAAGTGATCCGCCTGCCCCCC......................................................................................................................................................................321.000.001.00---------------------------------
............................................................................................AGTGCTGGGATTACAGACGAGTC.......................................................................................................................................231.000.00-1.00--------------------------------
............................................................CCTCAAGTGATCCGCCTGCCC.........................................................................................................................................................................211.000.00---------------------------1.00------
.............AGAGACAGGGTTTCGCCATGTTGGCCAGCGG..............................................................................................................................................................................................................311.000.001.00---------------------------------
......................................................................................................TTACAGACGTGAGCCACTGCGCCCAGGCTC......................................................................................................................301.000.00-1.00--------------------------------
............................................................................................................................................TAATCCAGCTGTTTCCAGGGACCC......................................................................................2411.001.00--------------------1.00-------------
.................ACAGGGTTTCGCCATGTTGGCCAGGACGG............................................................................................................................................................................................................291.000.001.00---------------------------------
...........................................................................................................................................................................................CCATCTTCTCCAGGT................................................1501.001.00-----------------1.00----------------
..........AGTAGAGACAGGGTTTCGCCGGGT........................................................................................................................................................................................................................241.000.00-1.00--------------------------------
.......................................................................................................TACAGACGTGAGCCACTGCGCCGGCC.........................................................................................................................261.000.00-1.00--------------------------------
............................................................................................AGTGCTGGGATTACAGACGAACC.......................................................................................................................................231.000.00-1.00--------------------------------
......................................................................................................TTACAGACGTGAGCCACTCCGT..............................................................................................................................221.000.001.00---------------------------------
..................................................................................................GGGATTACAGACGTGATAA.....................................................................................................................................191.000.00-----------------------------1.00----
........TTAGTAGAGACAGGGTTTCGCCATGTTGGCCA..................................................................................................................................................................................................................3201.001.00---1.00------------------------------
.............AGAGACAGGGTTTCGCCATGTTGGCCAGGAC..............................................................................................................................................................................................................311.000.001.00---------------------------------
........................................................................................................ACAGACGTGAGCCACTGGGGA.............................................................................................................................211.000.00-1.00--------------------------------
...................AGGGTTTCGCCATGTTGGACCG.................................................................................................................................................................................................................221.000.00---------1.00------------------------
........................................................................................................ACAGACGTGAGCCACTGCGCCCAGACC.......................................................................................................................2720.500.50-0.50--------------------------------
........................................................................................................ACAGACGTGAGCCACTGCGCCCAGAC........................................................................................................................2660.500.50-0.50--------------------------------

Antisense strand
TTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACTGCGCCCAGACCCCATTCTCTTAATCCAGCTGTTTCCAGGGACCCCCTCACTAACTTTCCCTGCTCCCCCATCTTCTCCAGGTTCCAAGTTCCCCATCAAGTGGACAGCCCCAGAAGCTGCCCTCTTTGGC
........................................................((.((.((..(((((((....(((((((....))).)).))..))))))).)).)).)).......................................................................................................................................
..................................................51..................................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782SRR189786SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040043(GSM532928)
G428T. (cervix)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577745(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189785SRR343335
.......................................................................CCGCCTGCCTTGGCCTCCCAGGC............................................................................................................................................................ 235.000.001.004.00--------------------------------
.....................................................CTCCTGACCTCAAGTGATCCGCCTCCC.......................................................................................................................................................................... 273.000.003.00---------------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGGC........................................................................................................................................................ 272.000.001.001.00--------------------------------
........................................GGCTGGTCTCAAACTCCTGACCTGTCC....................................................................................................................................................................................... 272.000.001.00-----------------------------1.00---
........................................GGCTGGTCTCAAACTCCTGACCTCAAGGGTC................................................................................................................................................................................... 312.000.002.00---------------------------------
..................................................AAACTCCTGACCTCAAGTGATTAAC............................................................................................................................................................................... 252.000.002.00---------------------------------
........................................GGCTGGTCTCAAACTCCTGACCTGCCC....................................................................................................................................................................................... 272.000.002.00---------------------------------
........................................GGCTGGTCTCAAACTCCTGACCTCAAGTGGTC.................................................................................................................................................................................. 322.000.002.00---------------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAGGC........................................................................................................................................................... 242.000.00-2.00--------------------------------
............................................................................................AGTGCTGGGATTACAGACGTGAGCCAGC.................................................................................................................................. 281.000.001.00---------------------------------
...........................................................................................AAGTGCTGGGATTACAGAA............................................................................................................................................ 191.000.00----------------1.00-----------------
.......................................................................CCGCCTGCCTTGGCCTCCCAGCCC........................................................................................................................................................... 241.000.00-1.00--------------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGAC........................................................................................................................................................ 271.000.00-1.00--------------------------------
..........................CGCCATGTTGGCCAGGCTGGTCTCAGT..................................................................................................................................................................................................... 271.000.00-------------------1.00--------------
.........................................................TGACCTCAAGTGATCCGCCTGCCAG........................................................................................................................................................................ 251.000.00-1.00--------------------------------
......................................................................TCCGCCTGCCTTGGCCTCCCAAAGTACGC....................................................................................................................................................... 291.000.001.00---------------------------------
.......TTTAGTAGAGACAGGGTTTCGCCATCACG...................................................................................................................................................................................................................... 291.000.00-1.00--------------------------------
...........................................................................................AAGTGCTGGGATTACAGACGTGAGTG..................................................................................................................................... 261.000.00----1.00-----------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGCTGGT..................................................................................................................................................... 301.000.00-1.00--------------------------------
....................................................ACTCCTGACCTCAAGTGATCCGCCTGCGG......................................................................................................................................................................... 291.000.00-1.00--------------------------------
....................................................ACTCCTGACCTCAAGTGATCCGCCTGCCTCCG...................................................................................................................................................................... 321.000.001.00---------------------------------
....................GGGTTTCGCCATGTTGGCCAGGCTGGGC.......................................................................................................................................................................................................... 281.000.001.00---------------------------------
................GACAGGGTTTCGCCATCTCC...................................................................................................................................................................................................................... 201.000.00-1.00--------------------------------
........................................GGCTGGTCTCAAACTCCTGACCTCAACGCC.................................................................................................................................................................................... 301.000.001.00---------------------------------
........................................GGCTGGTCTCAAACTCCTGACCTCGGTC...................................................................................................................................................................................... 281.000.001.00---------------------------------
...............................................................................................................................................................................TTCCCTGCTCCCCCATCG......................................................... 181.000.00----1.00-----------------------------
........................................GGCTGGTCTCAAACTCCTGACCTCAGTCC..................................................................................................................................................................................... 291.000.001.00---------------------------------
.....................................................................................................................................................................................GCTCCCCCATCTTCTCTGGG................................................. 201.000.00--------------------------1.00-------
...................AGGGTTTCGCCATGTTGGCCATTAA.............................................................................................................................................................................................................. 251.000.00-----1.00----------------------------
.....................GGTTTCGCCATGTTGGCCAGGCTGGTCGGC....................................................................................................................................................................................................... 301.000.00-1.00--------------------------------
......................................................................TCCGCCTGCCTTGGCCTCCCAAAGTAGCG....................................................................................................................................................... 291.000.00-1.00--------------------------------
........................................GGCTGGTCTCAAACTCCTGACCTGGTC....................................................................................................................................................................................... 271.000.001.00---------------------------------
....................GGGTTTCGCCATGTTGGCCAGAC............................................................................................................................................................................................................... 231.000.00------1.00---------------------------
..............................................................................................TGCTGGGATTACAGACGTGAGAAT.................................................................................................................................... 241.000.00----1.00-----------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGGGG......................................................................................................................................................... 261.000.00-1.00--------------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGG......................................................................................................................................................... 261.000.00-1.00--------------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGGG........................................................................................................................................................ 271.000.00-1.00--------------------------------
.......................................AGGCTGGTCTCAAACTCCTGACCTCAAGTCAGT.................................................................................................................................................................................. 331.000.00------------1.00---------------------
.................................................................................................TGGGATTACAGACGTGTAA...................................................................................................................................... 191.000.00-------------------------1.00--------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGGCA....................................................................................................................................................... 281.000.00-1.00--------------------------------
.............................................................................................................................CAGACCCCATTCTCTAGTG.......................................................................................................... 191.000.00----------1.00-----------------------
............................................................................................................................................................AGGGACCCCCTCACTCT............................................................................. 171.000.00-------1.00--------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGCTG....................................................................................................................................................... 281.000.00---------------------1.00------------
..............................................................................................................................................................................TTTCCCTGCTCCCCCATG.......................................................... 181.000.00--------------1.00-------------------
.....................................................................................................................................................................................GCTCCCCCATCTTCTCCTAA................................................. 201.000.00------------------------1.00---------
.............AGAGACAGGGTTTCGCCAGC......................................................................................................................................................................................................................... 201.000.00---1.00------------------------------
........................................GGCTGGTCTCAAACTCCTGAGCCC.......................................................................................................................................................................................... 241.000.001.00---------------------------------
......................GTTTCGCCATGTTGGCCAGGCTGGTCTGATG..................................................................................................................................................................................................... 311.000.001.00---------------------------------
...............................................................................................................................................................................................CTTCTCCAGGTTCCATCTG........................................ 191.000.00----------------------------1.00-----
.............AGAGACAGGGTTTCGCCACGG........................................................................................................................................................................................................................ 211.000.00-1.00--------------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGGGC....................................................................................................................................................... 281.000.00-1.00--------------------------------
.......................................................................CCGCCTGCCTTGGCCTCCCAAAGTGCTGCTC.................................................................................................................................................... 311.000.00-1.00--------------------------------
......................................................................TCCGCCTGCCTTGGCCTCCCAAAGTGA......................................................................................................................................................... 271.000.00-------------1.00--------------------
.........................TCGCCATGTTGGCCAGGCTGGTCTCAAGATC.................................................................................................................................................................................................. 311.000.001.00---------------------------------
...........................................................................................................................................................................................CCATCTTCTCCAGGTATG............................................. 1801.000.00---------------1.00------------------
..........................................................................................................................................AAACAGCTGGATTAAG................................................................................................ 1650.400.40--------------------------------0.200.20
.............................................................................................................................................................................................TGGAACCTGGAGAAGAT............................................ 1730.330.33-------------------------------0.33--