ID: uc001bmw.1_intron_10_0_chr1_27097818_f.5p
GENE: ARID1A(11)
chr1:27097768-27098017+


(3)
AGO2.ip 		(2)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(10)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(2)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(6)
SKIN

Sense strand
AGCTGCTGATTCCAAGAAGTCCCAGCCCAAGATCCAGCCTCCCTCTCCTGGTAAGGATGGGGTCAGCGGCCCCACCAAGGCTGAGAGGGCCTGTTGCCCTGGCCTCTTATTCAGGATATGAATAAGAGGCTTATCCAACAGGATATGCCAAGGATCTGTGCTCTGCCTTGCCCTACCACAGGGCTTAACAGGTTGGCTGACTAGAGAGTGGGCAGTGGAAACTCCCTTGGGAGGTACTCTACGGCAGCTC
.................................................((((.((.((((((.....)))))).((((((.(((.((((((...((...(((((((((((((.....)))))))))))))(((((....))))).))..))).)))...))).)))))))).)))).........................................................................
............................................45..................................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189787GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR029128(GSM416757)
H520. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)
................................................TGGTAAGGATGGGGTCGCAG......................................................................................................................................................................................20113.000.00110.00---2.00-------------------------1.00--------
.................................................GGTAAGGATGGGGTCGCAG......................................................................................................................................................................................1920.000.0020.00--------------------------------------
.................................................GGTAAGGATGGGGTCG.........................................................................................................................................................................................1610.000.0010.00--------------------------------------
..................................................GTAAGGATGGGGTCATC.......................................................................................................................................................................................177.000.00--7.00------------------------------------
................................................TGGTAAGGATGGGGTCGC........................................................................................................................................................................................186.000.00-6.00-------------------------------------
................................................TGGTAAGGATGGGGTCACA.......................................................................................................................................................................................195.000.005.00--------------------------------------
..................................................................................................CTGGCCTCTTATTCAGGATATGAATAAGAGGCTTATCCAACAGGATATGCCAAGGATCTGTGCTCTGCCTTGCCCTA...........................................................................7714.004.00---4.00-----------------------------------
.................................................GGTAAGGATGGGGTCGC........................................................................................................................................................................................173.000.00-3.00-------------------------------------
.................................................GGTAAGGATGGGGTCACAGG.....................................................................................................................................................................................203.000.003.00--------------------------------------
................................................TGGTAAGGATGGGGTCG.........................................................................................................................................................................................172.000.00-2.00-------------------------------------
...............................................CTGGTAAGGATGGGGTCGCAG......................................................................................................................................................................................212.000.00------1.00----------------------1.00---------
...............................................................................................................................................................................................................GTGGGCAGTGGAAACTCCC........................1912.002.00------------1.00--------------1.00-----------
................................................TGGTAAGGATGGGGTCGCA.......................................................................................................................................................................................192.000.00-1.00--1.00----------------------------------
................................................TGGTAAGGATGGGGTCACAGG.....................................................................................................................................................................................212.000.002.00--------------------------------------
......................................................................................................................................................AGGATCTGTGCTCTGCCTTGCCC.............................................................................2311.001.00----------------------------------1.00----
................................................................................................................................................................................................................TGGGCAGTGGAAACTCTG........................181.000.00--------------------------------1.00------
....GCTGATTCCAAGAAGTCCC...................................................................................................................................................................................................................................1911.001.00-----------------1.00---------------------
.............AAGAAGTCCCAGCCCAAGATCCAGCC...................................................................................................................................................................................................................2611.001.00-------------------------------1.00-------
.............AAGAAGTCCCAGCCCAAGATCCAGC....................................................................................................................................................................................................................2511.001.00---------1.00-----------------------------
...............................................CTGGTAAGGATGGGGTCG.........................................................................................................................................................................................181.000.001.00--------------------------------------
..............................................CCTGGTAAGGATGGGGTCGC........................................................................................................................................................................................201.000.00------1.00--------------------------------
..............................................CCTGGTAAGGATGGGGTCGCAG......................................................................................................................................................................................221.000.00----------------------------1.00----------
................AAGTCCCAGCCCAAGATC........................................................................................................................................................................................................................1811.001.00---------------------1.00-----------------
.................................................................................................................................................................................................TGGCTGACTAGAGAGTCTG......................................191.000.00-----1.00---------------------------------
...............................ATCCAGCCTCCCTCTCCTGGTAAGG..................................................................................................................................................................................................2511.001.00-------------------------1.00-------------
..........................................................GGGGTCAGCGGCCCCCGGC.............................................................................................................................................................................191.000.00----------1.00----------------------------
.................................................................................................................................................................................................TGGCTGACTAGAGAGTATG......................................191.000.00--------------------1.00------------------
........................................CCCTCTCCTGGTAAGGATG...............................................................................................................................................................................................1911.001.00----------------1.00----------------------
................................................TGGTAAGGATGGGGTCTCAG......................................................................................................................................................................................201.000.001.00--------------------------------------
................................................TGGTAAGGATGGGGTCGCAA......................................................................................................................................................................................201.000.00----1.00----------------------------------
................................................................................................................................................................................................................................CCTTGGGAGGTACTCTACG.......1911.001.00--------1.00------------------------------
.............AAGAAGTCCCAGCCCAAGAT.........................................................................................................................................................................................................................2011.001.00-------------------1.00-------------------
.............AAGAAGTCCCAGCCCAAGA..........................................................................................................................................................................................................................1911.001.00---------1.00-----------------------------
....................................................AAGGATGGGGTCAGCGGTTCA.................................................................................................................................................................................211.000.00---------------1.00-----------------------
................................................TGGTAAGGATGGGGTCCCC.......................................................................................................................................................................................191.000.00------------------1.00--------------------
................................................TGGTAAGGATGGGGTCACAG......................................................................................................................................................................................201.000.001.00--------------------------------------
..............................................................................................................................................................................ACCACAGGGCTTAACC............................................................161.000.00-----1.00---------------------------------
..................................................................................................................................................GCCAAGGATCTGTGCTCTGCCTTGCAA.............................................................................271.000.00--------1.00------------------------------
..........................................................................CCAAGGCTGAGAGGGC................................................................................................................................................................1630.670.67-----------------------------------0.330.33--
...............................................................................................................CAGGATATGAATAAGAG..........................................................................................................................1730.330.33-------------------------------------0.33-
................................................................AGCGGCCCCACCAAG...........................................................................................................................................................................1550.200.20--------------------------------------0.20

Antisense strand
AGCTGCTGATTCCAAGAAGTCCCAGCCCAAGATCCAGCCTCCCTCTCCTGGTAAGGATGGGGTCAGCGGCCCCACCAAGGCTGAGAGGGCCTGTTGCCCTGGCCTCTTATTCAGGATATGAATAAGAGGCTTATCCAACAGGATATGCCAAGGATCTGTGCTCTGCCTTGCCCTACCACAGGGCTTAACAGGTTGGCTGACTAGAGAGTGGGCAGTGGAAACTCCCTTGGGAGGTACTCTACGGCAGCTC
.................................................((((.((.((((((.....)))))).((((((.(((.((((((...((...(((((((((((((.....)))))))))))))(((((....))))).))..))).)))...))).)))))))).)))).........................................................................
............................................45..................................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189787GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR029128(GSM416757)
H520. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)
..................................................................CGGCCCCACCAAGGCTGG...................................................................................................................................................................... 182.000.00--------------1.00-----------1.00------------
................................................TGGTAAGGATGGGGTTGG........................................................................................................................................................................................ 182.000.00-------2.00-------------------------------
...............................................................CAGCGGCCCCACCAAGCTGG....................................................................................................................................................................... 201.000.00----------------------1.00----------------
................................................................................................................................................................................CACAGGGCTTAACAGTG......................................................... 171.000.00-----------------------1.00---------------
....................CCCAGCCCAAGATCCAGCCAG................................................................................................................................................................................................................. 211.000.00-------------1.00-------------------------
.................................CCAGCCTCCCTCTCCTGGG...................................................................................................................................................................................................... 191.000.00---------------------------------1.00-----
.................................CCAGCCTCCCTCTCCTGGTGGGG.................................................................................................................................................................................................. 231.000.00------------------------1.00--------------
.......ATCTTGGGCTGGGACTTCTTGGAATC......................................................................................................................................................................................................................... 2611.001.00-----------1.00---------------------------