ID: uc001bmd.3_intron_7_0_chr1_26662862_r
GENE: (11)
chr1:26662812-26663146-


(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(32)
BREAST
(15)
CELL-LINE
(31)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(3)
HELA
(2)
LIVER
(1)
OTHER
(47)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
ACTGGGGCGCTGGCAACAGCACCCTCGCCTCGCTGCAGCCGGTCCTACAGGTGCGTGCCGGCCGCGGGGGGCGGGGCCTCCCCGGTGGCGGGACCTGGAGTTCGGGTGCGCCCCGCCCCCACGCAGAGGTAGCGGGCTGGAGGACCTGCCTGGGCGCTTGGGGCGGGGCCTTAGAAGGGGGCGGGGCCGAGGGCGCGGCCGCGGGGTGGACGGTACTGAAACCTAGAGAAGACAAGGCTAGGGGCCGGCACCCTCCCTAATTCTCGATTCGGTCCCTACCTTCAGGTCGGGGAGCACGATCTGCACTTCGTCTCAAAGGTAAGGCAGGGACTCCG
.................................................................................................................................................................................(((..((((((((.(((...)))..((((((..((((.......(((((...........))))).)))).))))))..............))))))))..)))......................................................
.................................................................................................................................................................................178........................................................................................................285................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189787GSM532880(GSM532880)
G659T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR189786SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM532879(GSM532879)
G659N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532887(GSM532887)
G761N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR040012(GSM532897)
G648N. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191395(GSM715505)
25genomic small RNA (size selected RNA from t. (breast)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR040017(GSM532902)
G645T. (cervix)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
......................................................................................................................................................................................GGGGCCGAGGGCGCGAG........................................................................................................................................1714.000.001.00-----1.00-------1.00----2.00--------------1.00-1.00----1.00-1.00--1.00------1.00--------------1.00------1.00------1.00------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGAG........................................................................................................................................18513.202.60-0.20---0.200.20----------0.20---------0.60--1.400.600.600.20-0.20--0.600.20-------0.800.20-----------------------------------0.200.800.600.400.400.400.200.200.40--0.20---0.40-0.20-0.20-0.20-0.200.20--0.20-0.20----0.200.200.20--0.200.20----0.20------0.20------
......................................................................................................................................................................................GGGGCCGAGGGCGCGAGAC......................................................................................................................................198.000.00--1.00-------1.00-----1.00-----------------------1.00----------------------------1.001.00--1.00-------1.00-------------------------------------------------------------
......................................................................................................................................................................................GGGGCCGAGGGCGCGAGA.......................................................................................................................................187.000.00------1.001.00--1.00------1.00-----1.00-------1.00----------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGA.........................................................................................................................................1756.802.60-1.00-0.20-0.20----------------------------0.40--0.200.40-0.20-------0.40-----------------------------------0.20----0.200.40-0.200.200.20---0.20----------0.20----0.200.200.20----0.200.20----0.20--0.20-0.20-0.200.20-------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGAGA.......................................................................................................................................1954.802.60-------0.20-------0.20-0.40---------0.40--0.400.20-0.20-------------0.200.40-----------------------------------0.20-0.200.200.20-----0.20-0.20-------0.20-0.20------------------0.20--0.20--0.20-----------
.....................................................................................................................................................................................................................................................................TCTCGATTCGGTCCCTACC.......................................................1914.004.00----4.00------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................GACGGTACTGAAACCTAGAGAAGA.......................................................................................................2413.003.00--------3.00--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCG..........................................................................................................................................1652.602.60---0.40------------0.200.20-----------------0.200.20------------------------------------------------------0.20---0.20-0.20--0.40----------------0.20--------0.20----------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGC...........................................................................................................................................1592.442.44-----0.22---------0.11-0.22-----------------------0.110.11-----------------------------------------0.22--------0.330.110.11-----0.110.22----------------------------------0.110.11-0.110.110.11
..................................................................................................................................AGCGGGCTGGAGGACTCTG..........................................................................................................................................................................................192.000.00--------------1.00------------------------------------------1.00-------------------------------------------------------------------------------------
......................................................................................................................................................................................GGGGCCGAGGGCGCGTG........................................................................................................................................172.000.00------1.00----------------------------------------------------------------------------1.00-----------------------------------------------------------
................................................................................................................................................................................................................GACGGTACTGAAACCTAGAGAAGACAA....................................................................................................2712.002.00-----2.00-----------------------------------------------------------------------------------------------------------------------------------------
.................................................................GGGGGGCGGGGCCTCCCACG..........................................................................................................................................................................................................................................................202.000.00---------------2.00-------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................AGGGGGCGGGGCCGAGGGAGAG..........................................................................................................................................221.000.00-------------1.00---------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................AGAGGTAGCGGGCTGGATGC...............................................................................................................................................................................................201.000.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................GCAGAGGTAGCGGGCTGATTT................................................................................................................................................................................................211.000.00--------------------------------------------------------------------------1.00--------------------------------------------------------------------
...............................................................................................................................................ACCTGCCTGGGCGCTTGGGTGAC.........................................................................................................................................................................231.000.00-------------1.00---------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................TAGAAGGGGGCGGGGCAGG.................................................................................................................................................191.000.00------------------------------------------------------------------------------1.00----------------------------------------------------------------
...........................................................................................................................................................................................................GGGTGGACGGTACTGAAACCTAGAGAAG........................................................................................................2811.001.00--------------1.00--------------------------------------------------------------------------------------------------------------------------------
....................................................................GGGCGGGGCCTCCCCGCGCG.......................................................................................................................................................................................................................................................201.000.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................GTCGGGGAGCACGATCTGCA..............................2011.001.00---------------------1.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GCCTGGGCGCTTGGGCCC..........................................................................................................................................................................181.000.00---------------------1.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................CTTCAGGTCGGGGAGCAC......................................1811.001.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................GCGGCCGCGGGGTGGACGGCG........................................................................................................................211.000.00-1.00---------------------------------------------------------------------------------------------------------------------------------------------
................................................................CGGGGGGCGGGGCCTTT..............................................................................................................................................................................................................................................................171.000.00---------1.00-------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................AGAGGTAGCGGGCTGTA..................................................................................................................................................................................................171.000.00----------------------1.00------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GCGGGGCCGAGGGCGCGAG........................................................................................................................................191.000.00----------------------------------------------------------1.00------------------------------------------------------------------------------------
...................................................................................................................................................GCCTGGGCGCTTGGGGCG..........................................................................................................................................................................1811.001.00-------------------------------------------------------1.00---------------------------------------------------------------------------------------
......................................................................................................................................................................................GGGGCCGAGGGCGCGCGA.......................................................................................................................................181.000.00---------1.00-------------------------------------------------------------------------------------------------------------------------------------
................................................................................CCCGGTGGCGGGACCAAA.............................................................................................................................................................................................................................................181.000.00------------------1.00----------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................GGGGCCGAGGGCGCGCGAC......................................................................................................................................191.000.00---------------------------------------------1.00-------------------------------------------------------------------------------------------------
......................................................................................................................................................................................GGGGCCGAGGGCGCGCGC.......................................................................................................................................181.000.00---------------------------1.00-------------------------------------------------------------------------------------------------------------------
...........................................................GGCCGCGGGGGGCGGGGGG.................................................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------------1.00-----------------------------------------------------------------------------
........................................................................................................................................................GGCGCTTGGGGCGGGGGT.....................................................................................................................................................................181.000.00--------------------------------------------------------------------------------1.00--------------------------------------------------------------
..........................................................................................................................................................................................................GGGGTGGACGGTACTGAAACC................................................................................................................2111.001.00-----------------------------------------------------------------------------1.00-----------------------------------------------------------------
...................CACCCTCGCCTCGCTGCTA.........................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------------------------1.00----------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................GGTCGGGGAGCACGATCTGC...............................2011.001.00-----------------------------------------------------------------------1.00-----------------------------------------------------------------------
..............................................................................TCCCCGGTGGCGGGAT.................................................................................................................................................................................................................................................161.000.00----------------------1.00------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................GGGGTGGACGGTACTGAAACCTAGAGA..........................................................................................................2711.001.00--------------------1.00--------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................GGGGCCGAGGGCGCGAGC.......................................................................................................................................181.000.00-----1.00-----------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................AGAGGTAGCGGGCTGGATAGT..............................................................................................................................................................................................211.000.00--------------------------1.00--------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................GGGCGCGGCCGCGGGCGTT..............................................................................................................................191.000.00-----------------------1.00-----------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CTGCCTGGGCGCTTGCT.............................................................................................................................................................................171.000.00-------------------------------------1.00---------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GGGCGGGGCCGAGGG..............................................................................................................................................1501.001.00------------------------------------------------------------------------1.00----------------------------------------------------------------------
................................................................................................................................................................................................................................AGAGAAGACAAGGCTAGGG............................................................................................1911.001.001.00----------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................CCTTAGAAGGGGGCGGGGCCGAGGG..............................................................................................................................................2511.001.00-------1.00---------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGGG........................................................................................................................................181.000.00--------------------------------1.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................GTCGGGGAGCACGATCTG................................1811.001.00----------------------------------------------------1.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................GGGGCCGAGGGCGCGAGCA......................................................................................................................................191.000.00----------1.00------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................CTACCTTCAGGTCGGGGAG.........................................1911.001.00---------------------------------------------------1.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................ACCTTCAGGTCGGGGAGCA.......................................1911.001.00---------------------------------1.00-------------------------------------------------------------------------------------------------------------
................................................................................CCCGGTGGCGGGACCACA.............................................................................................................................................................................................................................................181.000.00------------------1.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................GGGCTGGAGGACCTGCGTGA......................................................................................................................................................................................201.000.00-------------1.00---------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................AGAGGTAGCGGGCTGCAT.................................................................................................................................................................................................181.000.00--------------------------------------------------1.00--------------------------------------------------------------------------------------------
......................................................................................................................................................................................GGGGCCGAGGGCGCGA.........................................................................................................................................161.000.00-------------------------------------------------------------1.00---------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGGC........................................................................................................................................1811.001.00----------------1.00------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................CTGCACTTCGTCTCAAAGG................1911.001.00-----------------------------1.00-----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGAGAC......................................................................................................................................2050.602.60---------------------------------------------------------------------------------------0.20---------0.20-----------------------------------0.20---------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGTG........................................................................................................................................1850.402.60--------------------------------------0.20-----------------------------------------------------------0.20--------------------------------------------
.......................................................................................................................................................................................GGGCCGAGGGCGCGGC........................................................................................................................................1640.250.25------------------------------------------------------------------------------------------------0.25----------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGAGC.......................................................................................................................................1950.202.60-------------------------------------------------------------------------------------------0.20---------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGCGCC......................................................................................................................................2050.202.60--------------------------------------------------------------------------------------------------------------0.20--------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGTGA.......................................................................................................................................1950.202.60----------------------------------------------------------------------------------------------------------------0.20------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGCGA.......................................................................................................................................1950.202.60------------------------------0.20----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCAA.........................................................................................................................................1790.112.44-------------------------------------------------------------------------------------------------------------------------------------------0.11---

Antisense strand
ACTGGGGCGCTGGCAACAGCACCCTCGCCTCGCTGCAGCCGGTCCTACAGGTGCGTGCCGGCCGCGGGGGGCGGGGCCTCCCCGGTGGCGGGACCTGGAGTTCGGGTGCGCCCCGCCCCCACGCAGAGGTAGCGGGCTGGAGGACCTGCCTGGGCGCTTGGGGCGGGGCCTTAGAAGGGGGCGGGGCCGAGGGCGCGGCCGCGGGGTGGACGGTACTGAAACCTAGAGAAGACAAGGCTAGGGGCCGGCACCCTCCCTAATTCTCGATTCGGTCCCTACCTTCAGGTCGGGGAGCACGATCTGCACTTCGTCTCAAAGGTAAGGCAGGGACTCCG
.................................................................................................................................................................................(((..((((((((.(((...)))..((((((..((((.......(((((...........))))).)))).))))))..............))))))))..)))......................................................
.................................................................................................................................................................................178........................................................................................................285................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189787GSM532880(GSM532880)
G659T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR189786SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040032(GSM532917)
G603N. (cervix)
SRR040022(GSM532907)
G575N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM532879(GSM532879)
G659N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532887(GSM532887)
G761N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040031(GSM532916)
G013T. (cervix)
SRR040012(GSM532897)
G648N. (cervix)
SRR040015(GSM532900)
G623T. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR040014(GSM532899)
G623N. (cervix)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR191463(GSM715573)
111genomic small RNA (size selected RNA from . (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR191395(GSM715505)
25genomic small RNA (size selected RNA from t. (breast)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
GSM532890(GSM532890)
G576T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR040017(GSM532902)
G645T. (cervix)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191558(GSM715668)
61genomic small RNA (size selected RNA from t. (breast)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.........................................................................................................GTGCGCCCCGCCCCCT...................................................................................................................................................................................................................... 165.000.00-----------3.00-------------2.00---------------------------------------------------------------------------------------------------------------------
.................................CGCACCTGTAGGACCGGCTGCA........................................................................................................................................................................................................................................................................................ 2214.004.004.00----------------------------------------------------------------------------------------------------------------------------------------------
.........................................................CCGGCCGCGGGGGGCACC.................................................................................................................................................................................................................................................................... 184.000.00------------3.00------------------------------------------------------------------1.00---------------------------------------------------------------
.....................................CACGCACCTGTAGGACCGGC...................................................................................................................................................................................................................................................................................... 2013.003.00-1.002.00--------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................GTGCGCCCCGCCCCCTGT.................................................................................................................................................................................................................... 182.000.00---------1.00----------------------------------------------1.00--------------------------------------------------------------------------------------
................................................................GGGAGGCCCCGCCCCCCG............................................................................................................................................................................................................................................................. 1812.002.00-----------------------------1.00---------1.00-------------------------------------------------------------------------------------------------------
...................................ACCTGTAGGACCGGCTG........................................................................................................................................................................................................................................................................................... 1712.002.00-2.00---------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGGG........................................................................................................................................ 1852.000.00------------------------1.00---------------------------------------------------1.00------------------------------------------------------------------
........................................................GCCGGCCGCGGGGGGCGGC.................................................................................................................................................................................................................................................................... 191.000.00-----------------------------------1.00-----------------------------------------------------------------------------------------------------------
.....................................CGCACCTGTAGGACCGGC........................................................................................................................................................................................................................................................................................ 1811.001.00--------------------------------------------1.00--------------------------------------------------------------------------------------------------
.........................................................................................................GTGCGCCCCGCCCCCTGTC................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------1.00--------------------------------------------------------------------------------
..........................................................................GGCCTCCCCGGTGGCGGCG.................................................................................................................................................................................................................................................. 191.000.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------
..................................................................GGGGGCGGGGCCTCCCCG........................................................................................................................................................................................................................................................... 181.000.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------
......................................CACGCACCTGTAGGACCGG...................................................................................................................................................................................................................................................................................... 1911.001.001.00----------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................CCGAGGGCGCGGCCGGGGA.................................................................................................................................. 191.000.00------------------------------------------------------1.00----------------------------------------------------------------------------------------
......................................ACGCACCTGTAGGACCGG....................................................................................................................................................................................................................................................................................... 1811.001.00--1.00--------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGGGC....................................................................................................................................... 1951.000.00------------------------1.00----------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGGGGG...................................................................................................................................... 2051.000.00---------------------------------------------------------------1.00-------------------------------------------------------------------------------
....................ACCGGCTGCAGCGAGGCGAGGGT.................................................................................................................................................................................................................................................................................................... 2311.001.00-------------------------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGGGG....................................................................................................................................... 1951.000.00------------------------------------------------------------1.00----------------------------------------------------------------------------------
...................................CACGCACCTGTAGGACCGGCTG...................................................................................................................................................................................................................................................................................... 2211.001.00----------------------------1.00------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................GGGGGCGGGGCCGAGGGCGCAGTA....................................................................................................................................... 241.000.00--------------------------1.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................................GCGGGCTGGAGGACCTCAGC........................................................................................................................................................................................ 201.000.00-----------------------------------------------------------1.00-----------------------------------------------------------------------------------
...............................GCACCTGTAGGACCGGCTGCAGC......................................................................................................................................................................................................................................................................................... 2311.001.00-------------------------------------------------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CGGGGCCGAGGGCGCGGG........................................................................................................................................ 181.000.00---1.00-------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................CCACGCAGAGGTAGCCCA....................................................................................................................................................................................................... 181.000.00----------------------------------------------------------------1.00------------------------------------------------------------------------------
...........................AGGACCGGCTGCAGCGAGG................................................................................................................................................................................................................................................................................................. 1911.001.00----------------------------1.00------------------------------------------------------------------------------------------------------------------
......................................GCACGCACCTGTAGGACCGG..................................................................................................................................................................................................................................................................................... 2011.001.00--1.00--------------------------------------------------------------------------------------------------------------------------------------------
......................................................CCCCGCGGCCGGCAC.......................................................................................................................................................................................................................................................................... 1570.140.14---------------0.14-------------------------------------------------------------------------------------------------------------------------------