ID: uc001bli.1_intron_6_0_chr1_26387826_r.5p
GENE: TRIM63(2)
chr1:26392559-26392808-


(1)
AGO1.ip
(1)
B-CELL
(1)
BRAIN
(3)
BREAST
(4)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(29)
SKIN

Sense strand
AACCTGCTGGTGGAGAACATCATCGACATCTACAAACAGGAGTGCTCCAGGTCGGTTCTCGTGCCTGCTGGGGGCCCGCCCTCCTTCCCAGCCATGCTGTGCCTAGATCCCCCACGCTCCTTCCCCCTCCTTCATCTGCTCAGGATCCAGGCCTCTAGCTGGACTAGCTACACAAGCCATTCAGAGACAGGACTGGAGACCCATACACCCCAACCCAGCTCTCAGGATTGCTCAGCGGATGGGAAGGGGC
.....................................................................(((((....))))).....((((...)))).((((.(((((.....((....................))...))))).))))..................................................................................................
.....................................................................70..................................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532889(GSM532889)
G576N. (cervix)
SRR040041(GSM532926)
G612T. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
..........................................................................CCCGCCCTCCTTCCCCCGC.............................................................................................................................................................1967.000.00-5.004.004.004.004.004.001.00-3.003.003.002.002.002.002.00-2.002.002.002.001.001.001.00-1.00-1.001.00-1.00--1.001.00---1.00-1.001.001.00-1.00-1.001.00---
..............................................................................................................................................................................................................................CAGGATTGCTCAGCGAAA..........183.000.00--------3.00------------------------------------------
..................................AACAGGAGTGCTCCAGTC......................................................................................................................................................................................................181.000.001.00--------------------------------------------------
.....................ATCGACATCTACAAACAGGAGTGCT............................................................................................................................................................................................................2511.001.001.00--------------------------------------------------
..CCTGCTGGTGGAGAACATCATCGACATCT...........................................................................................................................................................................................................................2911.001.001.00--------------------------------------------------
...........GGAGAACATCATCGACATCTACAAACA....................................................................................................................................................................................................................2711.001.001.00--------------------------------------------------
..................................................................................................................................TTCATCTGCTCAGGATGCCG....................................................................................................201.000.00---------------------------------------------1.00-----
......................................................................................................................................................GCCTCTAGCTGGACTACAAT................................................................................201.000.00-------------------------------1.00-------------------
......................................................................................................................................................................................................ACCCATACACCCCAACTCGT................................201.000.00------------------------------------------------1.00--
..................................................GTCGGTTCTCGTGCCTGCTGGGGGCCCG............................................................................................................................................................................2811.001.00--------------------------------------------------1.00
......CTGGTGGAGAACATCATCGACATC............................................................................................................................................................................................................................2411.001.00-------1.00-------------------------------------------
...........................................................................................................................................................................................CAGGACTGGAGACCCATACA...........................................2011.001.00-------1.00-------------------------------------------
..........................................................................CCCGCCCTCCTTCCCCCAC.............................................................................................................................................................191.000.00-------------------------------------------------1.00-
.........................................................................................................................................................................................GACAGGACTGGAGACCC................................................1730.330.33-------0.33-------------------------------------------

Antisense strand
AACCTGCTGGTGGAGAACATCATCGACATCTACAAACAGGAGTGCTCCAGGTCGGTTCTCGTGCCTGCTGGGGGCCCGCCCTCCTTCCCAGCCATGCTGTGCCTAGATCCCCCACGCTCCTTCCCCCTCCTTCATCTGCTCAGGATCCAGGCCTCTAGCTGGACTAGCTACACAAGCCATTCAGAGACAGGACTGGAGACCCATACACCCCAACCCAGCTCTCAGGATTGCTCAGCGGATGGGAAGGGGC
.....................................................................(((((....))))).....((((...)))).((((.(((((.....((....................))...))))).))))..................................................................................................
.....................................................................70..................................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532889(GSM532889)
G576N. (cervix)
SRR040041(GSM532926)
G612T. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040017(GSM532902)
G645T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................................................................AGGATCCAGGCCTCTTTAT.......................................................................................... 191.000.00------------------------------------1.00--------------
...............................................................................CCTCCTTCCCAGCCACCCG........................................................................................................................................................ 191.000.00-------------------------------------1.00-------------
............................................................................................................................CCCTCCTTCATCTGCTATGG.......................................................................................................... 201.000.00----------------1.00----------------------------------
..........................CATCTACAAACAGGACGG.............................................................................................................................................................................................................. 181.000.00--------------------------------1.00------------------
................................................................................................................................................................................................................CCCAACCCAGCTCTCAGGG....................... 191.000.00-----------------------------1.00---------------------
..................................................................................................................CGCTCCTTCCCCCTCCAGAC.................................................................................................................... 201.000.00----------------1.00----------------------------------
.........................................................................................................................................................................................GACAGGACTGGAGACGTTC.............................................. 191.000.00-----------------------------------1.00---------------
.......................................................................................................................CTTCCCCCTCCTTCATA.................................................................................................................. 171.000.00--------------------------1.00------------------------
...............................................................................................................................................................................CAGTCCTGTCTCTGAATGGC....................................................... 2011.001.001.00--------------------------------------------------
..........................................................................CCCGCCCTCCTTCCCTCA.............................................................................................................................................................. 181.000.00-------------------------------------------1.00-------
..........................................................................CCCGCCCTCCTTCCCTGG.............................................................................................................................................................. 181.000.00---------------------------------------1.00-----------
.....................................................................................................................................................................................................................CCCAGCTCTCAGGATCGAG.................. 191.000.00------------------------1.00--------------------------