ID: uc001bir.2_intron_4_0_chr1_24496092_r.5p
GENE: (2)
chr1:24507021-24507270-


(1)
B-CELL 		(3)
BRAIN 		(10)
BREAST 		(8)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(1)
LIVER 		(4)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
CCAGGGCTTGGCAACCCCCAGGATGTGACCTATTTTGTGGCCTATCAGAGGTAGAGGGGACTCTCTCGGCTGGTGGATGGGAAGACTGAGGGGGTGGGTGGGGGCTGGAGGGGCTTCTCTGGGACAGCTGCACCCAGTGTGGGCAGCACTGGCTAGCTCTCTGGGCCCTACGGGAGATGGCATGTGGCCGGCATTTGGAGAGGGGCTTTTGATAAAGGTCTGGAGGTGGGGAAGATGTTGAATGAAGAGC
.................................................................................................((((((.(((((.(((((...((((....(((((.((......))))))).))))..)))))))))).))))))......((((.....))))............................................................
.................................................................................82.............................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577580(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR040031(GSM532916)
G013T. (cervix)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
......................................................................................TGAGGGGGTGGGTGGGGGGGTT..............................................................................................................................................2224.000.00-7.003.002.002.001.002.001.00--1.001.00--------1.00----1.00----1.00---1.00----
......................................................................................TGAGGGGGTGGGTGGGAGAG................................................................................................................................................2016.000.0011.002.002.00--1.00---------------------------------
......................................................................................TGAGGGGGTGGGTGGGGGGGT...............................................................................................................................................214.000.00-2.002.00------------------------------------
......................................................................................TGAGGGGGTGGGTGGGGGGCTT..............................................................................................................................................223.000.00--1.001.00--------------------1.00--------------
.....................................................................................................................................................................................................................AAAGGTCTGGAGGTGAGC...................182.000.00--------2.00------------------------------
......................................................................................TGAGGGGGTGGGTGGGGTGGT...............................................................................................................................................212.000.00-2.00-------------------------------------
......................................................................................TGAGGGGGTGGGTGGGATG.................................................................................................................................................192.000.00-----1.00-------------1.00-------------------
......................................................................................TGAGGGGGTGGGTGGGAGAC................................................................................................................................................202.000.002.00--------------------------------------
......................................................................................TGAGGGGGTGGGTGGAGTT.................................................................................................................................................191.000.00---------------------1.00-----------------
...................................................................................................GGGGGCTGGAGGGGCCCA.....................................................................................................................................181.000.00----1.00----------------------------------
.........................................................................TGGATGGGAAGACTGATAA..............................................................................................................................................................191.000.00---------------------------------1.00-----
......................................................................................TGAGGGGGTGGGTGGGATAG................................................................................................................................................201.000.00----1.00----------------------------------
..............................................................................................................GGGCTTCTCTGGGACAGCTT........................................................................................................................201.000.00-----------------------------1.00---------
......................................................................................TGAGGGGGTGGGTGGGGGTGAA..............................................................................................................................................221.000.00----------1.00----------------------------
......................................................................................TGAGGGGGTGGGTGGGATTG................................................................................................................................................201.000.00----------------------1.00----------------
.........................................................................................................................................................................ACGGGAGATGGCATGTAAGG.............................................................201.000.00---------1.00-----------------------------
......................................................................................TGAGGGGGTGGGTGGGGGTGTT..............................................................................................................................................221.000.00-----------1.00---------------------------
......................ATGTGACCTATTTTGTCC..................................................................................................................................................................................................................181.000.00----------------------------1.00----------
......................................................................................TGAGGGGGTGGGTGGAC...................................................................................................................................................171.000.00---1.00-----------------------------------
............................................................................................GGTGGGTGGGGGCTGGAGGAAA........................................................................................................................................221.000.00--------------------------1.00------------
......................................................................................TGAGGGGGTGGGTGGGAGAT................................................................................................................................................201.000.00---------------------------1.00-----------
...........................................................................GATGGGAAGACTGAGGGGGT...........................................................................................................................................................2011.001.00-------------------------------1.00-------
......................................................................................TGAGGGGGTGGGTGGGACAG................................................................................................................................................201.000.001.00--------------------------------------
....................................................................................................................................................................................................................................GGGAAGATGTTGAATGAAGA..2011.001.00-----------------1.00---------------------
...................................................................................................................................................................................................................................GGGGAAGATGTTGAAGTG.....181.000.00----------------1.00----------------------
......................................................................................TGAGGGGGTGGGTGGGGGAGTT..............................................................................................................................................221.000.00------1.00--------------------------------
......................................................................................TGAGGGGGTGGGTGGGGGGG................................................................................................................................................201.000.00-------1.00-------------------------------
......................................................................................TGAGGGGGTGGGTGGGGGGGTA..............................................................................................................................................221.000.00-----------------------1.00---------------
..............................TATTTTGTGGCCTATATG..........................................................................................................................................................................................................181.000.00------------1.00--------------------------
.................................................................................................................................................................TGGGCCCTACGGGAGATGGCACG..................................................................231.000.00---------1.00-----------------------------
..............................................................................................................................................................................................................TTTTGATAAAGGTCTGGAGGTGG.....................2311.001.00--------------------------------1.00------
..................................................................CGGCTGGTGGATGGGGGAC.....................................................................................................................................................................1930.330.33-----------------------------------0.33---
..................................................................CGGCTGGTGGATGGGGCA......................................................................................................................................................................1830.330.33-------------------------------------0.33-
..................................................................CGGCTGGTGGATGGGTAAC.....................................................................................................................................................................1930.330.33------------------------------------0.33--
..................................................................CGGCTGGTGGATGGGGAAA.....................................................................................................................................................................1930.330.33---0.33-----------------------------------
..................................................................CGGCTGGTGGATGGG.........................................................................................................................................................................1530.330.33--------------------------------------0.33
..................................................................CGGCTGGTGGATGGGGCAC.....................................................................................................................................................................1930.330.33------------0.33--------------------------

Antisense strand
CCAGGGCTTGGCAACCCCCAGGATGTGACCTATTTTGTGGCCTATCAGAGGTAGAGGGGACTCTCTCGGCTGGTGGATGGGAAGACTGAGGGGGTGGGTGGGGGCTGGAGGGGCTTCTCTGGGACAGCTGCACCCAGTGTGGGCAGCACTGGCTAGCTCTCTGGGCCCTACGGGAGATGGCATGTGGCCGGCATTTGGAGAGGGGCTTTTGATAAAGGTCTGGAGGTGGGGAAGATGTTGAATGAAGAGC
.................................................................................................((((((.(((((.(((((...((((....(((((.((......))))))).))))..)))))))))).))))))......((((.....))))............................................................
.................................................................................82.............................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577580(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR040031(GSM532916)
G013T. (cervix)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
....................GGATGTGACCTATTTGT..................................................................................................................................................................................................................... 171.000.00---------------1.00-----------------------
....................................................................................................CCCAGAGAAGCCCCTCCAGCCCC............................................................................................................................... 2311.001.00--------------1.00------------------------
................................................................................................................................................................................................................................GGTGGGGAAGATGTTGCAG....... 191.000.00-------------1.00-------------------------
..............................................AGAGGTAGAGGGGACTA........................................................................................................................................................................................... 171.000.00------------------1.00--------------------