ID: uc001bie.2_intron_2_0_chr1_24175330_r.5p
GENE: (5)
chr1:24180650-24180899-


(1)
B-CELL
(1)
BRAIN
(3)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(1)
HEART
(3)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
GTCGTGACATGGCATTGTCTGATGTTACAGAAGAATCTGAAATCATTTCGGTAAGAGCACCTTTGAGTTTTTTGTTTTTGTTTTTTTTTTTTTAACATGCAGTATGATTTATTTTATATAATGTTCAAAAGCTTGCAAAAACAGCATATTGTTTACAGATGCATATTTTGGAGGTAAAATTATGAAGAAAAGCGAGATCATTATAAACAAAATTTAGGAGGGGGCTGGGATGGAGAAGGGCATGCAAAAG
................................................................................(((((((..(((.(((((...((((((......)))))).))))).))).((((.(((((...((((.(((....)))))))...))))).))))........)))))))............................................................
............................................................................77................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
GSM532874(GSM532874)
G699T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
TAX577741(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR029130(GSM416759)
DLD2. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577745(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTCGCG.........................................................................................................................................................2814.000.0010.004.00----------------------
.................................................................................TTTTTTTTTTTTAACATGCAGTTTG................................................................................................................................................253.000.003.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTTTGC.........................................................................................................................................................322.000.001.001.00----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTCTTG................................................................................................................................................................252.000.00-2.00----------------------
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTCGGG.........................................................................................................................................................282.000.002.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTTTTG.........................................................................................................................................................322.000.001.001.00----------------------
..........GGCATTGTCTGATGTTACAGAAGAATCT....................................................................................................................................................................................................................2812.002.00--2.00---------------------
....................................................................TTTTTGTTTTTGTTTTTTTTTTTTTCCTG.........................................................................................................................................................292.000.002.00-----------------------
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTCGC..........................................................................................................................................................271.000.00---1.00--------------------
..........................ACAGAAGAATCTGAAATCAT............................................................................................................................................................................................................2011.001.00-----------1.00------------
.......................................................................TTGTTTTTGTTTTTTTTTTTTTAGCG.........................................................................................................................................................261.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTGC............................................................................................................................................................291.000.00-1.00----------------------
........ATGGCATTGTCTGATGTTACAG............................................................................................................................................................................................................................2211.001.00-----1.00------------------
....................................................................TTTTTGTTTTTGTTTTTTTTTTTTTCTGG.........................................................................................................................................................291.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTCGC..........................................................................................................................................................311.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTCGC...........................................................................................................................................................301.000.001.00-----------------------
..............................................................TTGAGTTTTTTGTTTCTC..........................................................................................................................................................................181.000.001.00-----------------------
...................................................................TTTTTTGTTTTTGTTTTTTTTTTTTTCTGC.........................................................................................................................................................301.000.001.00-----------------------
...................................................................TTTTTTGTTTTTGTTTTTTTTTTTTTCATG.........................................................................................................................................................301.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTCTGC.........................................................................................................................................................321.000.001.00-----------------------
..........................ACAGAAGAATCTGAAATCATT...........................................................................................................................................................................................................2111.001.00---------------------1.00--
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTCGCT.........................................................................................................................................................281.000.00---1.00--------------------
...............................................................TGAGTTTTTTGTTTTTGTATT......................................................................................................................................................................211.000.00--------------1.00---------
.......CATGGCATTGTCTGATGTTACAGAAGAA.......................................................................................................................................................................................................................2811.001.00--1.00---------------------
............................................................................TTTGTTTTTTTTTTTTTAACAGAGG.....................................................................................................................................................251.000.00-1.00----------------------
....................................................................TTTTTGTTTTTGTTTTTTTTTTTTACC...........................................................................................................................................................271.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTCG...........................................................................................................................................................301.000.001.00-----------------------
........................................................................TGTTTTTGTTTTTTTTTTTTTAAGGGG.......................................................................................................................................................271.000.001.00-----------------------
........................................................................................................................................................................TGGAGGTAAAATTATGTCT...............................................................191.000.00---------1.00--------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTTC...........................................................................................................................................................301.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTCTCT.............................................................................................................................................................281.000.001.00-----------------------
...........................................................................TTTTGTTTTTTTTTTTTTAGTGG........................................................................................................................................................231.000.00-1.00----------------------
.....................................................................................................................................................................................................................TTAGGAGGGGGCTGGTGTT..................191.000.00--------------------1.00---
..............TTGTCTGATGTTACAGAAGA........................................................................................................................................................................................................................2011.001.00-----1.00------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTTTTC.........................................................................................................................................................321.000.00-1.00----------------------
..................................................................GTTTTTTGTTTTTGTTTTTTTTTCCCG.............................................................................................................................................................271.000.001.00-----------------------
.................................................................................................................................................................................................................AAATTTAGGAGGGGGCA........................171.000.00---------------1.00--------
..................................................................GTTTTTTGTTTTTGTTTTTTTTCGGG..............................................................................................................................................................261.000.001.00-----------------------
...........................CAGAAGAATCTGAAATCATTT..........................................................................................................................................................................................................2111.001.00--1.00---------------------
...........GCATTGTCTGATGTTACAG............................................................................................................................................................................................................................1911.001.00--1.00---------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTCCAC..............................................................................................................................................................271.000.00-1.00----------------------
...........................................................................TTTTGTTTTTTTTTTTTTATCTT........................................................................................................................................................231.000.00-1.00----------------------
........ATGGCATTGTCTGATGTT................................................................................................................................................................................................................................1811.001.00-------1.00----------------
...........................................................................TTTTGTTTTTTTTTTTTTAGGGG........................................................................................................................................................231.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTCTT...........................................................................................................................................................301.000.00-1.00----------------------
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTAGAGC........................................................................................................................................................291.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTCTGC..............................................................................................................................................................271.000.001.00-----------------------
.................TCTGATGTTACAGAAGAATCTG...................................................................................................................................................................................................................2211.001.00--1.00---------------------
............................AGAAGAATCTGAAATCAT............................................................................................................................................................................................................1811.001.00--------1.00---------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTCTTC..............................................................................................................................................................271.000.00-1.00----------------------
...................................................................TTTTTTGTTTTTGTTTTTTTTTTCGAG............................................................................................................................................................271.000.001.00-----------------------
.................................................................................TTTTTTTTTTTTAACATGCAGTT..................................................................................................................................................231.000.00-1.00----------------------
...............................AGAATCTGAAATCATTTCGGAACT...................................................................................................................................................................................................241.000.00------------------1.00-----
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTCTGC.........................................................................................................................................................281.000.001.00-----------------------
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTCGCA.........................................................................................................................................................281.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTCTT............................................................................................................................................................291.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTTCGC.........................................................................................................................................................321.000.001.00-----------------------
..........................................................................TTTTTGTTTTTTTTTTTTTACTGC........................................................................................................................................................241.000.00-1.00----------------------
................GTCTGATGTTACAGAAGAATA.....................................................................................................................................................................................................................211.000.00-----1.00------------------
..........................ACAGAAGAATCTGAAATCATTTCGGAA.....................................................................................................................................................................................................271.000.00-------------------1.00----
.............................GAAGAATCTGAAATCGATC..........................................................................................................................................................................................................191.000.00-------------1.00----------
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTAGCG.........................................................................................................................................................281.000.001.00-----------------------
...................................................................................TTTTTTTTTTAACATGCAGTTTG................................................................................................................................................231.000.001.00-----------------------
....................GATGTTACAGAAGAATCTGA..................................................................................................................................................................................................................2011.001.00----------------1.00-------
....................................................................TTTTTGTTTTTGTTTTTTTTTTTTTCCC..........................................................................................................................................................281.000.001.00-----------------------
...............................................................TGAGTTTTTTGTTTTTCGGT.......................................................................................................................................................................201.000.00---1.00--------------------
..................................................................GTTTTTTGTTTTTGTTTTTTTAATC...............................................................................................................................................................251.000.001.00-----------------------
..........................................................................TTTTTGTTTTTTTTTTTTTAACCAGG......................................................................................................................................................261.000.00-1.00----------------------
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTATGG.........................................................................................................................................................281.000.00---1.00--------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTGCT..........................................................................................................................................................311.000.001.00-----------------------
.................................................................AGTTTTTTGTTTTTGTTTTTTTTTTTTTTGCT.........................................................................................................................................................321.000.001.00-----------------------
.....................................................................TTTTGTTTTTGTTTTTTTTTTTTTAAC..........................................................................................................................................................2720.500.500.50-----------------------
.......................................................................TTGTTTTTGTTTTTTTTTTTTTAAC..........................................................................................................................................................2520.500.500.50-----------------------

Antisense strand
GTCGTGACATGGCATTGTCTGATGTTACAGAAGAATCTGAAATCATTTCGGTAAGAGCACCTTTGAGTTTTTTGTTTTTGTTTTTTTTTTTTTAACATGCAGTATGATTTATTTTATATAATGTTCAAAAGCTTGCAAAAACAGCATATTGTTTACAGATGCATATTTTGGAGGTAAAATTATGAAGAAAAGCGAGATCATTATAAACAAAATTTAGGAGGGGGCTGGGATGGAGAAGGGCATGCAAAAG
................................................................................(((((((..(((.(((((...((((((......)))))).))))).))).((((.(((((...((((.(((....)))))))...))))).))))........)))))))............................................................
............................................................................77................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189782SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
GSM532874(GSM532874)
G699T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
TAX577741(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR029130(GSM416759)
DLD2. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577745(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................TTTTTGTTTTTTTTTTTTTTC........................................................................................................................................................... 212.000.00----2.00-------------------
..................................................................GTTTTTTGTTTTTGTTTTTTTTTTCTTT............................................................................................................................................................ 281.000.00------1.00-----------------
......................................................................................................TATGATTTATTTTATATAAG................................................................................................................................ 201.000.00------1.00-----------------
...................................................................................................................................................................TATTTTGGAGGTAAACT...................................................................... 171.000.00----------1.00-------------
.........................................................................................................GATTTATTTTATATATCTG.............................................................................................................................. 191.000.00---1.00--------------------
......................................................................................................................................................................................................CATTATAAACAAAATCAG.................................. 181.000.00---1.00--------------------
.........................................................................GTTTTTGTTTTTTTTTTTTTG............................................................................................................................................................ 211.000.00----1.00-------------------
......................................................................................................................................................................................................CATTATAAACAAAATTTAGT................................ 201.000.00------------1.00-----------
.....................................................AGAGCACCTTTGAGTACC................................................................................................................................................................................... 181.000.00-----------------1.00------
..................................................................................................................................CTGTAAACAATATGCTGTTTTTGCAAGC............................................................................................ 2850.400.40----------------------0.40-
..............................................................................................................................................................................................................................CCCTTCTCCATCCCAGCC.......... 1870.140.14-----------------------0.14