ID: uc001bhx.1_intron_10_0_chr1_24125927_r.3p
GENE: GALE(1)
chr1:24125877-24126126-


(3)
B-CELL 		(9)
BREAST 		(5)
CELL-LINE 		(4)
CERVIX 		(3)
HEART 		(3)
HELA 		(4)
LIVER 		(2)
OTHER 		(5)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TATTTCCTGCTTCCTCCCAGCTGACCCTTGAGGGAAAGGGGGTGGGGGCCGCCTAGAGCAGGAGGTATTAGTCACTGCGCCCAGGAGCCAGTTTACACCTAGCGAAGGCGGAGGCATTGGACAAGCCTGGGTCTGAGCAGACAGAACCCCTTCCTGCGACCCTGGAGTCCCAATCGTGCTGCCATTTTCCTTCTGCCCAGGACTCTCCAGTCCTCAGTCACCTTGGACAAAGAAGTGTGGATCCTCAGAT
..........................................................................................................(((((..(((((((((...((.(((((...((((..((.....))..))))))))).)).)))).))).)).)))))...................................................................
....................................................................................................101........................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189784DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189785SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR038859(GSM458542)
MM386. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR343335SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532890(GSM532890)
G576T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
...........................................................................................................................................................................AATCGTGCTGCCATTTG..............................................................1717.002.004.00-1.00-2.00----------------------------------------
.........................................................................................................AGGCGGAGGCATTGGACAAGC............................................................................................................................2113.003.00---------2.00----------------1.00------------------
...............................................................................................................AGGCATTGGACAAGCCTGGGTCTGAGCAGACAG..........................................................................................................3313.003.00-3.00-------------------------------------------
...............................................................................................................AGGCATTGGACAAGCCTGGGTCTGAGCAGAC............................................................................................................3112.002.00-2.00-------------------------------------------
...........................................................................................................................................................................AATCGTGCTGCCATTT...............................................................1612.002.002.00--------------------------------------------
.........................................................................................................AGGCGGAGGCATTGGACAA..............................................................................................................................1912.002.00-----------------------1.00-----------1.00---------
.............................................................................................................................................................................................................................CTTGGACAAAGAAGTGTGGA.........2012.002.00------2.00--------------------------------------
.......................................................................................................GAAGGCGGAGGCATTGGACAA..............................................................................................................................2111.001.00---------------1.00-----------------------------
......................................................................................................CGAAGGCGGAGGCATTGGAC................................................................................................................................2011.001.00-----------------------------------------1.00---
................................................................................................................................GGGTCTGAGCAGACAGAA........................................................................................................1811.001.00------------------------1.00--------------------
....................................................................................................................................CTGAGCAGACAGAACCC.....................................................................................................1711.001.00---1.00-----------------------------------------
..........................................................................................................................................................................CAATCGTGCTGCCATTTG..............................................................1811.001.00----1.00----------------------------------------
...........................................................................................................................................................GCGACCCTGGAGTCCCAATCGTG........................................................................2311.001.00------------------------------1.00--------------
....................................................................................................AGCGAAGGCGGAGGCATTGGACAAG.............................................................................................................................2511.001.00-------------------------------------1.00-------
......................................................................................................................GGACAAGCCTGGGTCTGAGCAG..............................................................................................................2211.001.00----------------------1.00----------------------
...................................................................................................................ATTGGACAAGCCTGGGTC.....................................................................................................................1811.001.00---1.00-----------------------------------------
......................................................................................................CGAAGGCGGAGGCATTGGACAA..............................................................................................................................2211.001.00-------1.00-------------------------------------
...........................................................................................................................................................................AATCGTGCTGCCATT................................................................1511.001.00--1.00------------------------------------------
............................................................................................................................................................................................................................CCTTGGACAAAGAAGTGTGGATCCTC....2611.001.00-----------------1.00---------------------------
...................................................................................................................ATTGGACAAGCCTGGGTCT....................................................................................................................1911.001.00----------------1.00----------------------------
........................................................................................................................................................CCTGCGACCCTGGAGTCC................................................................................1811.001.00-----------1.00---------------------------------
............................................................................................................................................................................ATCGTGCTGCCATTTGA.............................................................171.000.00--1.00------------------------------------------
..........................................................................................................................................................................CAATCGTGCTGCCATTT...............................................................1711.001.00----------1.00----------------------------------
.......................................................................................................................................AGCAGACAGAACCCCTTCCT...............................................................................................2011.001.00---------------------1.00-----------------------
...........................................................................................................GCGGAGGCATTGGACAAG.............................................................................................................................1811.001.00--------1.00------------------------------------
...................................................................................................................................................................................................................................CAAAGAAGTGTGGATCCTCAGA.2211.001.00----------------------------1.00----------------
..............................AGGGAAAGGGGGTGGGGG..........................................................................................................................................................................................................1831.001.00---0.67----------------------------------------0.33
...................................................CCTAGAGCAGGAGGTATTAGTCA................................................................................................................................................................................2311.001.00--------------------------------1.00------------
......................................................................................................CGAAGGCGGAGGCATTGGACAAG.............................................................................................................................2311.001.00------------1.00--------------------------------
.......................................................................................................GAAGGCGGAGGCATTGGACA...............................................................................................................................2011.001.00-------------1.00-------------------------------
...............................................................................................................................................................................................................................TGGACAAAGAAGTGTGGGGGC......211.000.00-------------------------------1.00-------------
.........................................................................................................AGGCGGAGGCATTGGACAAGCCTTG........................................................................................................................251.000.00--------1.00------------------------------------
..............................................................................................ACACCTAGCGAAGGCGGAGGCATTGGACAA..............................................................................................................................3011.001.00-------------------1.00-------------------------
..........................................................................................................................................................................................................................CACCTTGGACAAAGAAGTGTGG..........2211.001.00-----------------------------1.00---------------
..............................................................................................................................................................ACCCTGGAGTCCCAATCGTGC.......................................................................2111.001.00---------------------------------1.00-----------
............................................................................................TTACACCTAGCGAAGGCGGAG.........................................................................................................................................2111.001.00-------------------------1.00-------------------
...............................................................................................................AGGCATTGGACAAGCCTGG........................................................................................................................1911.001.00------------------1.00--------------------------
.....................................................................AGTCACTGCGCCCAGATG...................................................................................................................................................................181.000.00------------------------------------------1.00--
..............................................................................................ACACCTAGCGAAGGCGGAG.........................................................................................................................................1911.001.00---------------------------1.00-----------------
.............................................................................CGCCCAGGAGCCAGTTTACACCT......................................................................................................................................................2311.001.00------------------------------------1.00--------
...................................................................................................................ATTGGACAAGCCTGGGTCTGAGCAGACAG..........................................................................................................2911.001.00-1.00-------------------------------------------
..................................................................................................CTAGCGAAGGCGGAGGCATTGGAC................................................................................................................................2411.001.00-----1.00---------------------------------------
.........................................................................................................................................................................CCAATCGTGCTGCCATT................................................................1711.001.00--1.00------------------------------------------
.............................................................................................TACACCTAGCGAAGGCGGAGGCAT.....................................................................................................................................2411.001.00--------------------------------------1.00------
...............................................................................................................AGGCATTGGACAAGCCTG.........................................................................................................................1811.001.00-------1.00-------------------------------------
..............................................................................................................................CTGGGTCTGAGCAGACAGA.........................................................................................................1911.001.00----------------------------------------1.00----
.................................................................................................CCTAGCGAAGGCGGAGGCATTGGACAAGCCTGGGTCTGAGCAGACAGAACC......................................................................................................5111.001.00--------------------1.00------------------------
.........................................................................................................................................................................CCAATCGTGCTGCCATTTG..............................................................191.000.001.00--------------------------------------------
...............................................................................................................AGGCATTGGACAAGCCTGGGTCTGAGCAGA.............................................................................................................3011.001.00----------------------------------1.00----------
...................................................................................................................................................CCCTTCCTGCGACCCGGGT....................................................................................191.000.00---------------------------------------1.00-----
.......................ACCCTTGAGGGAAAGG...................................................................................................................................................................................................................1630.330.33-------------------------------------------0.33-
.........CTTCCTCCCAGCTGAC.................................................................................................................................................................................................................................1690.220.22--0.11-------0.11----------------------------------

Antisense strand
TATTTCCTGCTTCCTCCCAGCTGACCCTTGAGGGAAAGGGGGTGGGGGCCGCCTAGAGCAGGAGGTATTAGTCACTGCGCCCAGGAGCCAGTTTACACCTAGCGAAGGCGGAGGCATTGGACAAGCCTGGGTCTGAGCAGACAGAACCCCTTCCTGCGACCCTGGAGTCCCAATCGTGCTGCCATTTTCCTTCTGCCCAGGACTCTCCAGTCCTCAGTCACCTTGGACAAAGAAGTGTGGATCCTCAGAT
..........................................................................................................(((((..(((((((((...((.(((((...((((..((.....))..))))))))).)).)))).))).)).)))))...................................................................
....................................................................................................101........................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189784DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189785SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR038859(GSM458542)
MM386. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR343335SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532890(GSM532890)
G576T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
...................................................................................................................................................CCCTTCCTGCGACCCAT...................................................................................... 171.000.00---1.00-----------------------------------------
...............................................................................................................................................................................................................CAGTCCTCAGTCACCCGGC........................ 191.000.00--------------1.00------------------------------
................CCAGCTGACCCTTGAGCAG....................................................................................................................................................................................................................... 191.000.00-----1.00---------------------------------------