ID: uc001bfj.61
GENE: HSPG2(35)
chr1:22191517-22191827-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO3.ip 		(5)
B-CELL 		(1)
BRAIN 		(17)
BREAST 		(26)
CELL-LINE 		(3)
CERVIX 		(3)
FIBROBLAST 		(9)
HEART 		(6)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(47)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CAGCGCTGCAGGGCCCTGAGAGGAGGAGCTACGAGATCATGTTCCGAGAGGTAAGGGGCACCTGGCCATGCTGTGTCTAACCCCACCCCACCCTCCACCCTGACTCAGAGCCTGGCTTTGATACCCACCCTGTCTCTCGCTCCCCAACCTTCACCTGGCAGCCCTCAGTCAGTGCCTGTAAGGCAGGATTTGGGGGGTGGTAACTGTAGGAGCAGCCCACAAAGCCCACTGCCCCCGCCCACGTTGCCACCCCCAACCCAGGAATTCTGGCGCCGGCCCGATGGGCAGCCGGCCACACGCGAGCACCTCCT
.......................................................................................((((((((((.((((...(((.((((((((..((((.......))))....(((.((............)).)))....)))))).))))).....))))...))))))))))...((((....))))................................................................................................
..............................................................................79........................................................................................................................................217............................................................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040008(GSM532893)
G727N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR038853(GSM458536)
MELB. (cell line)		TAX577453(Rovira)
total RNA. (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGC..................................................................................................23176.0076.0016.0013.001.00-3.002.00--2.003.001.002.001.001.001.001.00--2.00-----2.001.00-1.002.002.00-1.00-----3.00--1.001.00--1.001.00-2.00--1.001.00--1.00-----------1.001.00-1.00--1.00-1.00---------------------1.00--------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAG...................................................................................................22160.0060.0014.0010.008.002.00-1.00--1.00-1.00-2.00-1.001.00-----1.001.00------1.00-1.00-2.00--2.00-----1.00---1.00--1.001.00--1.00------1.00-------------------1.001.00----1.00----1.00------1.00------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAG...................................................................................................23158.0058.0010.008.0013.003.00--3.00-1.001.00-2.00--2.001.001.001.00---1.00----2.00-----1.00-----2.00------1.00----1.00----------------------1.00-----------1.00---------------------1.001.00--------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGC..................................................................................................24148.0048.005.004.004.005.002.003.002.001.001.00---1.00-1.00--2.00--4.002.001.001.00----------1.00--------2.00-1.00---1.00--------1.00-----------1.00----1.00---------------------------------------1.00-------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGT..................................................................................................23118.0060.00-7.00------1.00----2.00-----------------1.00-1.00-------1.00------------------------------------1.00----1.00---1.00----1.00--------------------1.00---------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGT..................................................................................................24116.0058.008.00-2.001.00---1.00------------------------1.00-------------1.00--1.00--------------------------------------------------------1.00----------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGA..................................................................................................23113.0060.00----1.00-----2.00-----1.00-1.00----1.00----1.00------------------1.00----------1.00--1.00--------------1.00--------------------------1.00-----------------1.00-------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAG...................................................................................................21112.0012.003.00----------------1.00-------------------------------------2.002.00------2.00-------------------------1.00---1.00-----------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGA....................................................................................................22112.0012.00-1.001.002.001.00----------1.00--------------1.00-------------1.00------------1.00-1.00------------------------------1.00--------1.00-----------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGC..................................................................................................22110.0010.001.00---1.00----1.00---1.00--------------------1.00---------------------------1.00-----2.001.00---1.00-------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGA....................................................................................................2119.009.002.00-----1.00---1.00--------------1.00--------------1.00-1.00--------1.00---------------1.00-------------------------------------------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGAG...................................................................................................2418.008.008.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCTT................................................................................................2516.0076.001.00-----------------------------2.00-------1.00-------------------------1.00-----------------------------1.00----------------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGG.....................................................................................................2216.006.005.00-1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAAT..................................................................................................2315.009.004.00---------------------------------------------------------------------------------------1.00----------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGA..................................................................................................2415.0058.00----------------1.00------------------------1.00--1.00-------------------------------------------------------1.00----------------------1.00-----
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGA....................................................................................................2015.005.004.00-------------------------------------------------------------------------------------------------------------------1.00------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAA...................................................................................................2215.009.001.00------------------2.00------------1.00-------------1.00----------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCATT...............................................................................................264.000.00------------------------------------1.00----------------------1.00----1.00-------1.00--------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCAT................................................................................................264.000.00-------1.00-----------------------------------1.00------------------1.00--1.00---------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCT.................................................................................................2414.0076.00--1.00--1.00----------------------------------------------------------------1.00----------------------------------------1.00-----------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAAT...............................................................................................264.000.00--3.00---------------1.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGG.....................................................................................................2114.004.001.00-1.00------------1.00-----------------------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGG..................................................................................................2413.0058.003.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................AGGAATTCTGGCGCCGGC..................................1813.003.00----2.00----------------------------------1.00-----------------------------------------------------------------------------------------
.AGCGCTGCAGGGCCCTGAGAGGA...............................................................................................................................................................................................................................................................................................2313.003.00--3.00------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCA.................................................................................................2313.003.00-------------------2.00-------------------------------------------------------------------------------------------------1.00-----------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCT.................................................................................................2512.0048.00---------------------------------------1.00--------------------1.00--------------------------------------------------------------------
.................GAGAGGAGGAGCTACGAGATC.................................................................................................................................................................................................................................................................................2112.002.00------------------------1.00-----------------------------------------1.00--------------------------------------------------------------
.AGCGCTGCAGGGCCCTGAGAGGAG..............................................................................................................................................................................................................................................................................................2412.002.00-----------------------------------2.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGTT.................................................................................................2412.0060.00----------------------2.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAT................................................................................................252.000.00-------1.00---------------------------------------------------------------1.00---------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGG.....................................................................................................2012.002.00------1.00-------------------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGT..................................................................................................2212.0012.00----------1.00-1.00--------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCATT...............................................................................................2512.003.00------------------------1.00---------1.00----------------------------------------------------------------------------------------------
................................GAGATCATGTTCCGAGAG.....................................................................................................................................................................................................................................................................1812.002.00---------------------------------------------------1.00------------------------------1.00----------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAAA..................................................................................................2211.005.00----------------------------------------------------------------------------------------------------------------------------1.00----
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGA....................................................................................................2311.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
.................................AGATCATGTTCCGAGAGGTAAGGGGCA...........................................................................................................................................................................................................................................................2711.001.00--1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................CACCCCACCCTCCACGCCC.................................................................................................................................................................................................................191.000.00------------------------------------------------------------------------------------------------------1.00--------------------------
...............CTGAGAGGAGGAGCTACGAGA...................................................................................................................................................................................................................................................................................2111.001.00-----------1.00---------------------------------------------------------------------------------------------------------------------
..GCGCTGCAGGGCCCTGAGAGGAGGAGCT.........................................................................................................................................................................................................................................................................................2811.001.00------------------------------------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCCT................................................................................................2511.0076.00----------------------------------------------------------------------------------------------------------------------1.00----------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCT.................................................................................................2311.0010.00-----------------------------------------------------------------------------1.00---------------------------------------------------
....................................................................................................................................................................................................................................................................................................CCACACGCGAGCACCTC..1711.001.00---------------------------------------------------------------------------------------------------------1.00-----------------------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGCGA..................................................................................................2311.002.00----1.00----------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGCAT................................................................................................2411.003.00-------1.00-------------------------------------------------------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCATG..............................................................................................................................................................................................................................................................................2611.001.00------------------------------------------------1.00--------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCGCCCACGTTGCCACCCCCA........................................................2411.001.00--------------------------------------------------------------------------------------------------------1.00------------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCATT...............................................................................................231.000.00-----------------------------------------------------------------1.00---------------------------------------------------------------
.....................GGAGGAGCTACGAGATCATGTT............................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------------------------1.00-------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGCATTTT.............................................................................................291.000.00-----------1.00---------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................GGGGGTGGTAACTGTAGGAGCATT...............................................................................................241.000.00-------------1.00-------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGA..................................................................................................2211.0012.00-----------------------------------------------------------------------1.00---------------------------------------------------------
.......................AGGAGCTACGAGATCATGTT............................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------------------------------------------------1.00---------
.....................................................................................................................................................................................................................................................................GAATTCTGGCGCCGGCCCGATGGG..........................2411.001.00----------------------------------------------------------------------------------------------------------------1.00----------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAT...................................................................................................2311.0012.00------------------------------------------1.00--------------------------------------------------------------------------------------
.....CTGCAGGGCCCTGAGAGGAGGAGCTACG......................................................................................................................................................................................................................................................................................2811.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................GCCCACGTTGCCACCCCCAACCCAG..................................................2511.001.00------------------------------------------------------------------------------------1.00--------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAG......................................................................................................2011.001.00-----------------------1.00---------------------------------------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCATA..............................................................................................................................................................................................................................................................................261.000.00------------------------------------------------1.00--------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGAG.................................................................................................2511.0058.00-----------------------1.00---------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAGTT.................................................................................................2511.0058.00---------1.00-----------------------------------------------------------------------------------------------------------------------
...........GGCCCTGAGAGGAGGAGC..........................................................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------1.00----------------------------------------------------------------------------
.................GAGAGGAGGAGCTACTGA....................................................................................................................................................................................................................................................................................181.000.00------------------------------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCAT................................................................................................221.000.00------------------------------------------------------------------------------------------------------------------------1.00--------
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTA.......................................................................................................1811.001.00-----------------------------------1.00---------------------------------------------------------------------------------------------
.................................................................................................................................................................................................GGGGTGGTAACTGTAGGAGCATC...............................................................................................231.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CCCCCGCCCACGTTGCCACC............................................................2011.001.00----------------1.00----------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAG......................................................................................................2111.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------
...............CTGAGAGGAGGAGCTACGAGATCA................................................................................................................................................................................................................................................................................2411.001.00--------------------------------------------------------------------------------------------------------------------------1.00------
...............................................................................................................................................................................................GGGGGGTGGTAACTGTAGGAGAA.................................................................................................2311.0012.00--------------------------------------------------------------------------------------------------------------1.00------------------
...CGCTGCAGGGCCCTGAGAGGAGGAGCTAAG......................................................................................................................................................................................................................................................................................301.000.00-------------------------------------------------------------1.00-------------------------------------------------------------------
...........GGCCCTGAGAGGAGGAGCTAC.......................................................................................................................................................................................................................................................................................2111.001.00----------------------------------------------------1.00----------------------------------------------------------------------------
..........GGGCCCTGAGAGGAGGAG...........................................................................................................................................................................................................................................................................................1821.001.00----------------------------------------------------0.50-------------------------------------------------------------------------0.50--
..............................................................................................................................................................................................TGGGGGGTGGTAACTGTAGGAGCAA................................................................................................251.000.00-----------------------------------------------------------------------------------------------------------------------------1.00---
............................................................................................................................................................................................TTTGGGGGGTGGTAACTGTAGGAGC..................................................................................................2511.001.00----------------------------------------1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGTAGC..................................................................................................2411.001.00-------------------------1.00-------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................TTGGGGGGTGGTAACTGTAGGAAT..................................................................................................2411.0012.00---------------------------------------------------------1.00-----------------------------------------------------------------------
.....................GGAGGAGCTACGAGA...................................................................................................................................................................................................................................................................................1520.500.50-----0.50---------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TGCCCCCGCCCACGTT..................................................................1620.500.50--------------------------------------------------------------------------0.50------------------------------------------------------
................TGAGAGGAGGAGCTACG......................................................................................................................................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------------------------------------0.50-

Antisense strand
CAGCGCTGCAGGGCCCTGAGAGGAGGAGCTACGAGATCATGTTCCGAGAGGTAAGGGGCACCTGGCCATGCTGTGTCTAACCCCACCCCACCCTCCACCCTGACTCAGAGCCTGGCTTTGATACCCACCCTGTCTCTCGCTCCCCAACCTTCACCTGGCAGCCCTCAGTCAGTGCCTGTAAGGCAGGATTTGGGGGGTGGTAACTGTAGGAGCAGCCCACAAAGCCCACTGCCCCCGCCCACGTTGCCACCCCCAACCCAGGAATTCTGGCGCCGGCCCGATGGGCAGCCGGCCACACGCGAGCACCTCCT
.......................................................................................((((((((((.((((...(((.((((((((..((((.......))))....(((.((............)).)))....)))))).))))).....))))...))))))))))...((((....))))................................................................................................
..............................................................................79........................................................................................................................................217............................................................................................
SizePerfect hitTotal NormPerfect NormSRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040008(GSM532893)
G727N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR191422(GSM715532)
129genomic small RNA (size selected RNA from . (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR191393(GSM715503)
22genomic small RNA (size selected RNA from t. (breast)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR038853(GSM458536)
MELB. (cell line)		TAX577453(Rovira)
total RNA. (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................................................................CACTGACTGAGGGCT......................................................................................................................................... 1571.711.71----0.14--------------------0.710.430.14----------------------------------------------------------------------------------------------------0.29
...........................................................................................................................................................................................................................................CGCCCACGTTGCCACCCG.......................................................... 181.000.00-------------------------------------------------------------------------------1.00-------------------------------------------------
....................................................................................................................................................CTTCACCTGGCAGCCAACC................................................................................................................................................ 191.000.00-----------------------------------------------------------------------------------------------1.00---------------------------------
...........................................CCGAGAGGTAAGGGGCCGC......................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................GCCACCCCCAACCCAGGATGGG............................................ 221.000.00-----------------------------------------------------------------------------------------------------1.00---------------------------
...................................................................................CACCCCACCCTCCACCCTGTCA.............................................................................................................................................................................................................. 221.000.00------------------------------------------------------------------------------------------------------------------1.00--------------
...........................................GCCCCTTACCTCTCGG............................................................................................................................................................................................................................................................ 1611.001.00-------------------------------------------------------------------------------------------------------------1.00-------------------
............................................GCCCCTTACCTCTCG............................................................................................................................................................................................................................................................ 1530.330.33-----------------------------------------------------0.33---------------------------------------------------------------------------