ID: uc001bfj.2_intron_73_0_chr1_22202536_r
GENE: (23)
chr1:22202486-22202771-


(1)
AGO1.ip 		(1)
BRAIN 		(1)
BREAST 		(11)
CELL-LINE 		(5)
CERVIX 		(7)
HEART 		(8)
LIVER 		(2)
OTHER 		(29)
SKIN 		(1)
XRN.ip

Sense strand
TATCTGGACCCTACTTCTGGAGCCTCCCTTCACGCTTCCTGGGGGACAAGGTGGGTAGTGGGTGGAAAGGCAAAGGAAACTCCAGGCAGCAGGAACAGCGCAGGCAAAGGCTTGGAGGCGGGAGGGTCGTGGTGCCTTGGGAGAATAGTGAGATACACTGCATGGAAAAGGTGGCTGGAGCAGTGACAGGGCCCGAATTCAGGCCTCCGCAAGCTCCTGTCTAACCCTGGTCCCAGGTGACCTCCTATGGAGGAGAGCTGCGCTTCACAGTGACCCAGAGGTCCCA
...................................................((((....((((......((..((....))....)).((((((...((....((..(((((((((..((((...(((.....(((((.......(((((.....))))).......))))).((....))...)))....))))..)))))))))..))..))))))))...))))....))))...................................................
..................................................51.......................................................................................................................................................................................236................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
........................................................................................................................................................................................................................CTGTCTAACCCTGGTCCCAGA.................................................21136.0010.008.00--2.002.00-2.00----1.00-1.001.001.00-1.001.001.00--1.001.001.00-----1.001.001.00-----1.00-1.00-1.00----1.001.001.00-1.00---1.00-1.00------
........................................................................................................................................................................................................................CTGTCTAACCCTGGTCCCAG..................................................20110.0010.00---2.00-2.00----1.00---------1.00------------1.00---1.00-1.00----------------1.00-------
.................................GCTTCCTGGGGGACAAGGTG.........................................................................................................................................................................................................................................2016.006.00-6.00--------------------------------------------------------------
......................................................................................................................................................................................................................................................ATGGAGGAGAGCTGCGCTTCACAGTG..............2612.002.002.00---------------------------------------------------------------
.......................................................................................................................................................................................................................CCTGTCTAACCCTGGTCCCAGA.................................................2212.002.00-----------1.00--1.00-------------------------------------------------
...CTGGACCCTACTTCTGGAGC.......................................................................................................................................................................................................................................................................2012.002.00--1.00-1.00-----------------------------------------------------------
......................................................................................................................................................................................................................................................ATGGAGGAGAGCTGCGC.......................1712.002.00-------------------------1.00------------------------1.00-------------
.....................................................GGTAGTGGGTGGAAAAA........................................................................................................................................................................................................................172.000.00---------2.00------------------------------------------------------
.......................................................................................................................................................................................................................CCTGTCTAACCCTGGTCCCAG..................................................2112.002.00----------------2.00-----------------------------------------------
.......................................TGGGGGACAAGGTGGCG......................................................................................................................................................................................................................................171.000.00--1.00-------------------------------------------------------------
..................................................................................................................................................................TGGAAAAGGTGGCTGGAG..........................................................................................................1811.001.00------------------------------------1.00---------------------------
..........................................................................................................................................................................................................................................................AGGAGAGCTGCGCTTCACAGTG..............2211.001.00--1.00-------------------------------------------------------------
......................................................................................................................................................................................................................................................ATGGAGGAGAGCTGCGCTT.....................1911.001.00----------------------------------------------1.00-----------------
....................................................................................................................GGCGGGAGGGTCGTGGGT........................................................................................................................................................181.000.00-------------------------------------------1.00--------------------
.......................................................................................................................................................................................................................................................................TTCACAGTGACCCAGTTCT....191.000.00-----------------------------------1.00----------------------------
.......ACCCTACTTCTGGAGCCTCCC..................................................................................................................................................................................................................................................................2111.001.00-------1.00--------------------------------------------------------
........................................................................................................................................................................................................................CTGTCTAACCCTGGTCCCAGT.................................................2111.0010.001.00---------------------------------------------------------------
......................................................................................................................................................................................................................................................ATGGAGGAGAGCTGCGCTTTA...................2111.001.00---------------------1.00------------------------------------------
...................................TTCCTGGGGGACAAGGGCA........................................................................................................................................................................................................................................191.000.00------------1.00---------------------------------------------------
...CTGGACCCTACTTCTGGAGCC......................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------------1.00---------
.................................................................................................................................................................................................................................................................CTGCGCTTCACAGTGACCCAGAGGT....2511.001.00----1.00-----------------------------------------------------------
........................................................................................................................................................................................................................CTGTCTAACCCTGGTCCC....................................................1811.001.00----------------------------------1.00-----------------------------
........................................................................................................................................................................................................................CTGTCTAACCCTGGTCCCCG..................................................2011.001.00-----------------------------------------------------------1.00----
..................................................................................................................................................................................................................................................TCCTATGGAGGAGAGCTGCG........................2011.001.00-----1.00----------------------------------------------------------
...............................ACGCTTCCTGGGGGACAAGGTG.........................................................................................................................................................................................................................................2211.001.00--1.00-------------------------------------------------------------
........................................................................................................................................................................................................................CTGTCTAACCCTGGTCCCAGAG................................................2211.0010.00----------------------------1.00-----------------------------------
..TCTGGACCCTACTTCTGGAGCCTCCCTTCA..............................................................................................................................................................................................................................................................3011.001.00----------1.00-----------------------------------------------------
.....................GCCTCCCTTCACGCTTCCTGGG...................................................................................................................................................................................................................................................2211.001.00------1.00---------------------------------------------------------
............................................................................................................................................................................................................................................................GAGAGCTGCGCTTCACAGT...............1911.001.00-------1.00--------------------------------------------------------
...................................TTCCTGGGGGACAAGGTGAC.......................................................................................................................................................................................................................................201.000.00---------------------------------------------1.00------------------
....................................................................................................................................................................................................ATTCAGGCCTCCGCAACCA.......................................................................191.000.00--------------------------------------------1.00-------------------
..TCTGGACCCTACTTCTGGAGCC......................................................................................................................................................................................................................................................................2211.001.00---------------------------1.00------------------------------------
.................TGGAGCCTCCCTTCACGC...........................................................................................................................................................................................................................................................1811.001.00---------------1.00------------------------------------------------
....................................................................................................................................................................................................................................................CTATGGAGGAGAGCTG..........................1611.001.00--------------------------1.00-------------------------------------
..TCTGGACCCTACTTCTGGAGCCTCCCTT................................................................................................................................................................................................................................................................2811.001.001.00---------------------------------------------------------------
.....................GCCTCCCTTCACGCTTCCTGGGGGACAAGGTG.........................................................................................................................................................................................................................................3211.001.00-----------------------------------------------------1.00----------
...............................................................................................................................................................................TGGAGCAGTGACAGGACTG............................................................................................191.000.00------------1.00---------------------------------------------------
.....GGACCCTACTTCTGGAGCC......................................................................................................................................................................................................................................................................1911.001.00-------1.00--------------------------------------------------------
..........CTACTTCTGGAGCCTCCC..................................................................................................................................................................................................................................................................1811.001.00-------------1.00--------------------------------------------------
...............TCTGGAGCCTCCCTTCAC.............................................................................................................................................................................................................................................................1811.001.00----------------------------------------------------------1.00-----
......................................................................................................................................................................................................................................................ATGGAGGAGAGCTGCGCTTCACAGTGA.............2711.001.00----------------------------------------------------1.00-----------
............ACTTCTGGAGCCTCCCTT................................................................................................................................................................................................................................................................1811.001.00-----------------------------1.00----------------------------------
.....................................................................................................................................................................................................................................................TATGGAGGAGAGCTGC.........................1630.330.33-----------------0.33----------------------------------------------
..TCTGGACCCTACTTC.............................................................................................................................................................................................................................................................................1570.290.29-----0.14--------------------------------------------------------0.14-
..............................................................................................................................TCGTGGTGCCTTGGG.................................................................................................................................................1560.170.17-------------------------------------------------------------0.17--
...........TACTTCTGGAGCCTC....................................................................................................................................................................................................................................................................1580.120.12---------------------------------------------------------------0.12

Antisense strand
TATCTGGACCCTACTTCTGGAGCCTCCCTTCACGCTTCCTGGGGGACAAGGTGGGTAGTGGGTGGAAAGGCAAAGGAAACTCCAGGCAGCAGGAACAGCGCAGGCAAAGGCTTGGAGGCGGGAGGGTCGTGGTGCCTTGGGAGAATAGTGAGATACACTGCATGGAAAAGGTGGCTGGAGCAGTGACAGGGCCCGAATTCAGGCCTCCGCAAGCTCCTGTCTAACCCTGGTCCCAGGTGACCTCCTATGGAGGAGAGCTGCGCTTCACAGTGACCCAGAGGTCCCA
...................................................((((....((((......((..((....))....)).((((((...((....((..(((((((((..((((...(((.....(((((.......(((((.....))))).......))))).((....))...)))....))))..)))))))))..))..))))))))...))))....))))...................................................
..................................................51.......................................................................................................................................................................................236................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040014(GSM532899)
G623N. (cervix)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.....................................................GGTAGTGGGTGGAAAGAG....................................................................................................................................................................................................................... 182.000.00--------2.00-------------------------------------------------------
.....................GCCTCCCTTCACGCTAAA....................................................................................................................................................................................................................................................... 181.000.00-----------------------------------------1.00----------------------
...........................................................................................................................................ATCTCACTATTCTCC.................................................................................................................................... 1550.200.20------------------------------------------------------------0.20---