ID: uc001beh.2_intron_11_0_chr1_21437877_r.5p
GENE: (1)
chr1:21494254-21494503-


(13)
B-CELL 		(10)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(1)
OTHER 		(6)
SKIN 		(1)
UTERUS

Sense strand
TTAGAAGTTATGACTGCACATTACAAAGGGGAATGTTCAAACCTTTATCAGTAAGTCAAACATCTTTTGAGTTATTGTTCCTGTAATGTTTTGCATTATTTGCAAGATTAAAACTCAGTGTAACATCACAAGTTTTTTTCCCATACAATTATTTACATTTCTTTATTATCTCTTTAAGTTCATCTTTATATGTTCAAGTATACTAAGTTTTTAAAAAAGGCTGGGAGCCAGAGTCCTAATTTTTTTTTTC
.........................................................................................................((..((((((..(((......))).))))))..))..............................................................................................................
.................................................................................................98..................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343336SRR343337SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343334SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR189782SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
......................................................................................................CAAGATTAAAACTCAAAG..................................................................................................................................1823.000.004.005.004.00------3.00--1.00-2.00---1.00--1.00--------1.001.00----------
......................................................................................................CAAGATTAAAACTCAAAGG.................................................................................................................................1920.000.00-4.002.00--4.00--2.00---2.00----2.00-1.00--1.00-1.00-1.00---------------
......................................................................................................CAAGATTAAAACTCAAAT..................................................................................................................................1811.000.00---8.00-------3.00------------------------------
...................................................................................................TTGCAAGATTAAAACTCA.....................................................................................................................................1814.004.003.00-------1.00---------------------------------
...................................................................................................TTGCAAGATTAAAACTCAA....................................................................................................................................1914.004.002.00-2.00---------------------------------------
.....................................................................................................................................................TATTTACATTTCTTTATTATCTCTTTAAG........................................................................2913.003.00----1.00-1.001.00----------------------------------
.................................................................................................................................................CAATTATTTACATTTCTTTATTATCTCTTTAAG........................................................................3313.003.00-------3.00----------------------------------
......................................................................................................................................................ATTTACATTTCTTTATTATCTCTTTAAG........................................................................2813.003.00----1.00-2.00-----------------------------------
.....................................................................................................GCAAGATTAAAACTCAAAGG.................................................................................................................................2072.860.57--0.86--1.29--0.14----0.43-----0.14----------------------
.....................................................................................................GCAAGATTAAAACTCAAAG..................................................................................................................................1972.570.570.710.140.14--0.29--0.290.29-------------------------0.140.140.140.140.14--
.......................................................................................................................................................TTTACATTTCTTTATTATCTCTTTAAG........................................................................2712.002.00----2.00-------------------------------------
..................................................................................................................................................AATTATTTACATTTCTTTATTATCTCTTTAAG........................................................................3212.002.00----2.00-------------------------------------
...........................................................................................................................................................CATTTCTTTATTATCTCTTTAAG........................................................................2311.001.00----1.00-------------------------------------
......................................................................................................CAAGATTAAAACTCAAGG..................................................................................................................................181.000.00-------------------------1.00----------------
....................................................................................................TGCAAGATTAAAACTCAAAGG.................................................................................................................................211.000.00-----1.00------------------------------------
....................................................................................................................................................TTATTTACATTTCTTTATTATCTCTTTAAG........................................................................3011.001.00-------1.00----------------------------------
.................................................................................................................................................................................................................................AGCCAGAGTCCTAATTTTTTTTTCTT261.000.00----------------1.00-------------------------
......................................................................................................................................................................................................................AAAAGGCTGGGAGCCAGAGTCC..............2211.001.00--------------------1.00---------------------
......................................................................................................................................................ATTTACATTTCTTTATTATCTCTTTAAGC.......................................................................2911.003.00----------------1.00-------------------------
............................................................................................................................................................ATTTCTTTATTATCTCTTTAAG........................................................................2211.001.00------1.00-----------------------------------
........................................................................................................................................................................................................................AAGGCTGGGAGCCAGGATA...............191.000.00----------------------------1.00-------------
......................................................................................................................................................ATTTACATTTCTTTAGAC..................................................................................181.000.00-----------------------------1.00------------
.....................................................................................................GCAAGATTAAAACTCCAAG..................................................................................................................................191.000.00---------------1.00--------------------------
.......................................................................................................................................................................................................................AAAGGCTGGGAGCCAGAGTC...............2011.001.00-----------------------1.00------------------
..........................AGGGGAATGTTCAAACCTTT............................................................................................................................................................................................................2011.001.00----------1.00-------------------------------
............................................................................................................................................................ATTTCTTTATTATCTCTTAAG.........................................................................211.000.00----1.00-------------------------------------
...................................................................................................TTGCAAGATTAAAACTCAAA...................................................................................................................................2011.004.00-----1.00------------------------------------
......................................................................................................CAAGATTAAAACTCAAAGA.................................................................................................................................191.000.00---------------------------------1.00--------
......................................................................................................CAAGATTAAAACTCAAATG.................................................................................................................................191.000.00--------------------------------1.00---------
....................................................................................................................................................TTATTTACATTTCTTTATTATCTCTTCAAG........................................................................301.000.00------1.00-----------------------------------
...................................................................................................TTGCAAGATTAAAACTCAAAGG.................................................................................................................................2211.004.00---------------1.00--------------------------
.....................................................................................................................................TTTTTTCCCATACAATTATTTACATTTCTTTATTA..................................................................................3511.001.00------1.00-----------------------------------
.....................................................................................................GCAAGATTAAAACTCA.....................................................................................................................................1670.570.57-0.43------0.14---------------------------------
.....................................................................................................GCAAGATTAAAACTCAAAGA.................................................................................................................................2070.290.57--------------------0.14--------------------0.14
.....................................................................................................GCAAGATTAAAACTCAAAT..................................................................................................................................1970.290.57------------------0.14---------------0.14-------
.....................................................................................................GCAAGATTAAAACTCAAAA..................................................................................................................................1970.140.57--0.14---------------------------------------
.....................................................................................................GCAAGATTAAAACTCAAGGA.................................................................................................................................2070.140.57----------------------------------------0.14-

Antisense strand
TTAGAAGTTATGACTGCACATTACAAAGGGGAATGTTCAAACCTTTATCAGTAAGTCAAACATCTTTTGAGTTATTGTTCCTGTAATGTTTTGCATTATTTGCAAGATTAAAACTCAGTGTAACATCACAAGTTTTTTTCCCATACAATTATTTACATTTCTTTATTATCTCTTTAAGTTCATCTTTATATGTTCAAGTATACTAAGTTTTTAAAAAAGGCTGGGAGCCAGAGTCCTAATTTTTTTTTTC
.........................................................................................................((..((((((..(((......))).))))))..))..............................................................................................................
.................................................................................................98..................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343336SRR343337SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343334SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR189782SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................ACATCACAAGTTTTTTCGGA............................................................................................................ 202.000.00----------2.00-------------------------------
.......................................................................................................................................................................................................................ATTAGGACTCTGGCTCCCAGCCTTT.......... 2511.001.00---------------------------1.00--------------
......................................................................................................................................................ATTTACATTTCTTTATTGT................................................................................. 191.000.00-------------1.00----------------------------
...................................................................................................................................................................................................AAGTATACTAAGTTTTTTTG................................... 201.000.00-------------1.00----------------------------