ID: uc001bcs.3_intron_4_0_chr1_20230892_f
GENE: (5)
chr1:20230842-20231433+


(1)
BRAIN 		(1)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATGAAGTAGAGGATGCTGTCCAGAAAGTTTGTAATGCAACTGGATGTTCAGTTAGTATTTCTGTCTTGCAGGAATGATTTAGAAGCAAGCATTGCTGTGCCTAGCTTACTTCTTAGTTTCGTAGCACCTCTCTAGCATATCAGCACCTTGTGGGCCAAAATAGGCCCATGAGATTTGTAGTTTGATTAGTGTATGTGGCTTAATGAGAGCTGTTTATTAATTTCCCTGTTGTTTGCTAGACTTCACCCAGTACTGCTCAAAGGTCTTAGGAAGTATGTGGATTTAATTTTTCCTGACTAGTGTTTACAGTAGTACAAATGCAGTTTTATAGAGGGAATTCATTTATAAGTGTACATTAGACGGTTATTTCAAGGGACCAACCTTATTGGAAATCGACATTTTTCTAAATGGAAAAGGTCCTGAAACCTTGTGTTAATTCTCACTATTACATCTTTATGTTTATGATTATTGAAGTAGAGCTAGGCAGAAAAATATACCCAGAGTTTTGAAGTGGTTTTTTTGTTTGTTTGTTTCTTGGATAGGATTTTAATTTAATAGTCCAGAACCTGGAAGCTGAAAATTATAATATTGA
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................((((.(((..((((.((((((((((((.....(((....))).....))))))))))))))))....))).))))...................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................467........................................................................542................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR343334DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGTCCAGAACCTGGAAGCTGA...............2415.005.00----3.00-2.00-------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTACAC.......................................................264.000.002.002.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTTCCTGG......................................................294.000.003.001.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTGTTTGTTTGTTTCTTTTGC....................................................284.000.004.00-------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTTTGTTTCTCGG......................................................303.000.00-3.00------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCTGG.......................................................263.000.001.001.00-----------------------1.00------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCAGC.......................................................263.000.001.002.00------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTTTGTTTCCTGG......................................................303.000.002.001.00------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCTTCTG.....................................................253.000.00-3.00------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGAGCTAGGCAGAAAAAT...................................................................................................2212.002.00----------2.00---------------------
.........................................................................................................................................................................................................................................................................................................................................................TAAGTGTACATTAGAGATA....................................................................................................................................................................................................................................192.000.00-----2.00--------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTCGCA........................................................252.000.00-2.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTTCTTCT......................................................292.000.002.00-------------------------------
............................................................................................................................................................................................GTGTATGTGGCTTAATGAGAGCTG............................................................................................................................................................................................................................................................................................................................................................................................2412.002.00---------2.00----------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGTGGTTTTTTTGTTTTTTT...............................................................242.000.002.00-------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTGTTTGTTTGTTTCTCCC......................................................252.000.001.001.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCGGAG......................................................232.000.001.001.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGTGGTTTTTTGCTT....................................................................192.000.00--2.00-----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTTCTCGG......................................................292.000.002.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTTGC.........................................................262.000.002.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTCT..........................................................252.000.00-2.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCGGC.......................................................222.000.002.00-------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTTTGTTTCTTCT......................................................302.000.002.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTTCTCG.......................................................282.000.002.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTGCCT.....................................................242.000.00-2.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTCTC............................................................232.000.001.001.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTCGTT........................................................272.000.002.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTCATG...........................................................242.000.00-2.00------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTAGAGCTAGGCAGAAAAAT...................................................................................................2311.001.00----------------------------1.00---
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGTCCAGAACCTGGAAGCTGA...............2511.001.00--------1.00-----------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAATTTAATAGTCCAAAAC..........................231.000.00-----------------------1.00--------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTGTTTGTTTCTTGGTTAG..................................................241.000.00--1.00-----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTTCTTGGAC....................................................311.000.001.00-------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGTTTGTTTGTTTCTTGTAGT...................................................251.000.00-1.00------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTTTTACG...........................................................251.000.001.00-------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGAAGTGGTTTTTTTGT.....................................................................2211.001.001.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTCTTG....................................................251.000.00-------------------1.00------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCGGGA......................................................241.000.00-1.00------------------------------
...AAGTAGAGGATGCTGTCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------------1.00----
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCTGAG......................................................271.000.001.00-------------------------------
..........GGATGCTGTCCAGAAAGTTTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00-1.00------------------------------
......................................................................................................................TCGTAGCACCTCTCTATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------------------1.00-------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGCTAGGCAGAAAAATATACC..............................................................................................2511.001.00---------------------1.00----------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTCTT................................................................201.000.001.00-------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCCGGT......................................................271.000.001.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTAGG.........................................................261.000.001.00-------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTGTTTGTTTGTTTCTTTCG.....................................................271.000.001.00-------------------------------
...........................................................................................................................................................CAAAATAGGCCCATGAGATTTGTAGTTTGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................3211.001.00------------1.00-------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCTTGTTTT...................................................3011.001.001.00-------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTGTTTGTTTGTTTCTGTC......................................................261.000.00-1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTGTTTGTTTGTTTCTTGGTCT...................................................291.000.00-1.00------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTCCTT.................................................................191.000.00-1.00------------------------------
.....GTAGAGGATGCTGTCCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------1.00------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTTTGTCTC..........................................................261.000.001.00-------------------------------
.............................................................................................GCTGTGCCTAGCTTACTTCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------1.00-----------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGAAGTGGTTTTTTTGTTTGTTCG..............................................................291.000.001.00-------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTCTTT........................................................251.000.00-1.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGTGGTTTTTTTGTTTGTTTGTTTC..........................................................2911.001.00-1.00------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTTTGTTTCCCGG......................................................301.000.001.00-------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTCCTT........................................................251.000.00-1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTGTTTGTTTGTTTCTCCC......................................................261.000.001.00-------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCTGGT......................................................271.000.00-1.00------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTGGTTTTTTTGTTTGTTTGTTCCC.........................................................291.000.001.00-------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCTTGTTC....................................................261.000.001.00-------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGTGGTTTTTTTGT.....................................................................1911.001.00-1.00------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCTTG.......................................................2611.001.001.00-------------------------------
...AAGTAGAGGATGCTGTCCAGAAAGTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00----------------------1.00---------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTGCAGC...................................................261.000.001.00-------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTGTTTGTTTGTTTCTAGG......................................................251.000.001.00-------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTTTGTTTCTTCC......................................................301.000.001.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTAATAGTCCAGAACCTGGAAGC..................2711.001.00--------1.00-----------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCTGCCG.....................................................251.000.00-1.00------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTCGTC........................................................251.000.001.00-------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCTCC.......................................................261.000.001.00-------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTGTTTGTTTGTTTCTGG.......................................................251.000.001.00-------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTTGTC...............................................................211.000.001.00-------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTGTTTGTTTGTTTCTCTTG.....................................................271.000.00--1.00-----------------------------
.........................................................................................CATTGCTGTGCCTAGCTTACTTCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00---1.00----------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGAAGTAGAGCTAGGCAT.........................................................................................................231.000.00-------1.00------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGTGGTTTTTTGTTA....................................................................191.000.00--1.00-----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGCAAG..............................................................191.000.00---------------1.00----------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTGGTTTTTTTGTTTTTT................................................................221.000.00-1.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTGGGG.....................................................241.000.00-1.00------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTTTCCCT...........................................................251.000.001.00-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTGTAGT...................................................261.000.00-1.00------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGTTTGTTTGTTTCTTGGGTGG..................................................261.000.001.00-------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGTTTGTTTGTTTCTTGGTCCG..................................................261.000.001.00-------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTTTTTTGTTTGTC................................................................201.000.001.00-------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTTGTTTGTTTCTTGGTC....................................................231.000.001.00-------------------------------
............................................................................................................................................................................................GTGTATGTGGCTTAACT...................................................................................................................................................................................................................................................................................................................................................................................................171.000.00--------------------------1.00-----
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGAGCTAGGCAGAAAAATA..................................................................................................2311.001.00-----------1.00--------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTTCGCT.......................................................261.000.001.00-------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCGGGG......................................................241.000.00-1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTTTTGTTTGTTTGTTTCCCT.......................................................251.000.001.00-------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTGTTCC..........................................................231.000.00-1.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTTCTAC.......................................................281.000.001.00-------------------------------
........................................................................................................................................................................................................................................................................................ATTTAATTTTTCCTGCATG.....................................................................................................................................................................................................................................................................................................191.000.00-----------------1.00--------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTAGAGCTAGGCAGAAAAATATA................................................................................................2611.001.00--------------------1.00-----------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTTTTTGTTTGTTTCTCC...........................................................221.000.00-1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGAAGTAGAGCTAGGCAGAAAA.....................................................................................................2711.001.00---1.00----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCGGAG......................................................241.000.00-1.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCGGGG......................................................231.000.001.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTTTTTTTGTTTGTTTGTTTCTTGG......................................................2911.001.00-1.00------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAAATCGACATTTAGT............................................................................................................................................................................................201.000.00-1.00------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCTTGG......................................................2430.670.670.330.33------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAACCTGGAAGCTGA...............1820.500.50------------------------------0.50-
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGAAGTAGAGC................................................................................................................1620.500.50-----------------------------0.50--
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTGGTC....................................................2570.430.140.43-------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCTTGGTC....................................................2630.330.67-0.33------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCTTGGTTG...................................................2730.330.67--0.33-----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTGTTTGTTTGTTTCTTGGCTC...................................................2730.330.670.33-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTGGTCTT..................................................2770.290.140.29-------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTTGTTTGTTTGTTTCTTG.......................................................2460.170.17--0.17-----------------------------
.........................................................................................................................................................................................TTAGTGTATGTGGCT........................................................................................................................................................................................................................................................................................................................................................................................................1560.170.17-----------0.17--------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTGGCT....................................................2570.140.14-0.14------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTGG......................................................2370.140.140.14-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTGGGC....................................................2570.140.140.14-------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGTTTGTTTGTTTCTTGGGTT...................................................2670.140.14-0.14------------------------------

Antisense strand
ATGAAGTAGAGGATGCTGTCCAGAAAGTTTGTAATGCAACTGGATGTTCAGTTAGTATTTCTGTCTTGCAGGAATGATTTAGAAGCAAGCATTGCTGTGCCTAGCTTACTTCTTAGTTTCGTAGCACCTCTCTAGCATATCAGCACCTTGTGGGCCAAAATAGGCCCATGAGATTTGTAGTTTGATTAGTGTATGTGGCTTAATGAGAGCTGTTTATTAATTTCCCTGTTGTTTGCTAGACTTCACCCAGTACTGCTCAAAGGTCTTAGGAAGTATGTGGATTTAATTTTTCCTGACTAGTGTTTACAGTAGTACAAATGCAGTTTTATAGAGGGAATTCATTTATAAGTGTACATTAGACGGTTATTTCAAGGGACCAACCTTATTGGAAATCGACATTTTTCTAAATGGAAAAGGTCCTGAAACCTTGTGTTAATTCTCACTATTACATCTTTATGTTTATGATTATTGAAGTAGAGCTAGGCAGAAAAATATACCCAGAGTTTTGAAGTGGTTTTTTTGTTTGTTTGTTTCTTGGATAGGATTTTAATTTAATAGTCCAGAACCTGGAAGCTGAAAATTATAATATTGA
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................((((.(((..((((.((((((((((((.....(((....))).....))))))))))))))))....))).))))...................................................
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................467........................................................................542................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR343334DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
..AACTTTCTGGACAGCATCCTCTACTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2712.002.00---2.00----------------------------
..CTGGACAGCATCCTCTACTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2111.001.00-------------1.00------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................AGGACCTTTTCCATTTA........................................................................................................................................................................... 1721.001.001.00-------------------------------
...............................................................................................................................................................................................................................................ACTTCACCCAGTACTGCGCG............................................................................................................................................................................................................................................................................................................................................. 201.000.00----------------1.00---------------
..................................................................................................................................................................................................CTCTCATTAAGCCAC............................................................................................................................................................................................................................................................................................................................................................................................... 1550.400.40----0.40---------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAAAACCACTTC.................................................................... 1790.110.11-------------------------------0.11