ID: uc001bcq.1_intron_7_0_chr1_20113611_r.5p
GENE: TMCO4(1)
chr1:20126491-20126740-


(2)
B-CELL 		(3)
BREAST 		(12)
CELL-LINE 		(6)
CERVIX 		(1)
HEART 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(19)
SKIN 		(1)
UTERUS

Sense strand
CCCTGCAGGGCCCTTCTCCCGCGCCGCGCTGTCTCGCTGCTTCCTGGAGGGTAAATGGACCCACACACAGATGTGGCGCCGCGGGCTTGCCGGTCACCTGCAGAGGCCGGCACCCCTGTCGCGATGGGTGGTGGAGGTGGGGCAGAGGTGGGACGAGCCAGGTCGGGACCCGCAGCTGGCGAGTCAGAGCCTGGAAGGCCCCGCGCCCCCGCGCCGCGCTCCCTAAGTGCTCCGCCCGGCCGGTGGCGAC
......................................................................................................................((((........))))......(((..((((..(((..(((((..(((...)))...)))))..)))...)))).....)))..................................................
......................................................................................................................119..............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532889(GSM532889)
G576N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577579(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................................................................................GTCAGAGCCTGGAAGGCCC.................................................19117.0017.0017.00--------------------------------------------------
......................................................................................................................................................................................................CCCCGCGCCCCCGCGCCGGC................................2025.501.50---------0.50------1.00-----0.50------1.00------0.50-0.500.500.500.50---------
...........................................................................................................................ATGGGTGGTGGAGGTATCG............................................................................................................195.000.00-5.00-------------------------------------------------
...........................................................................................................................ATGGGTGGTGGAGGTATC.............................................................................................................185.000.00-4.00---------------------1.00---------------------------
..................................................................ACAGATGTGGCGCCGCCT......................................................................................................................................................................184.000.00---2.00-1.00---1.00-----------------------------------------
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCGGGG................................193.000.00--2.00-----1.00------------------------------------------
....................................................................................................................................................................................GAGTCAGAGCCTGGAAGGC...................................................1913.003.00----3.00----------------------------------------------
...........................................................................................................................................................AGCCAGGTCGGGACCGGAT............................................................................193.000.00---1.00-1.00---------1.00-----------------------------------
...........................................................................................................................................................AGCCAGGTCGGGACCGG..............................................................................172.000.00---1.00-1.00---------------------------------------------
...........................................................................................................................................................AGCCAGGTCGGGACCGGA.............................................................................182.000.00----------2.00----------------------------------------
............................................................................................................................................................................................................................CCCTAAGTGCTCCGCCCGG...........1912.002.00-----------2.00---------------------------------------
...................................................................CAGATGTGGCGCCGCCT......................................................................................................................................................................172.000.00-----2.00---------------------------------------------
..................................................................ACAGATGTGGCGCCG.........................................................................................................................................................................1512.002.00---1.00-------------1.00---------------------------------
......................................................................................................................................................................................................CCCCGCGCCCCCGCGCCG..................................1821.501.50------------0.50---------0.50----------------------0.50-----
............................CTGTCTCGCTGCTTCTG.............................................................................................................................................................................................................171.000.00----------------------------1.00----------------------
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCCGGGGA..............................2171.000.14--0.43-----0.57------------------------------------------
.................................................................................................................CCCTGTCGCGATGGGTGGTA.....................................................................................................................201.000.00--------------------------------1.00------------------
..................................................................................GGGCTTGCCGGTCACCTGC.....................................................................................................................................................1911.001.00-------------------1.00-------------------------------
..................................................................ACAGATGTGGCGCCGCC.......................................................................................................................................................................171.000.00---1.00-----------------------------------------------
...........................................CTGGAGGGTAAATGGACC.............................................................................................................................................................................................1811.001.001.00--------------------------------------------------
.......................................................................................................................................GGTGGGGCAGAGGTGGGAACCC.............................................................................................221.000.00-----------------------------------1.00---------------
........................................TTCCTGGAGGGTAAATGGACCCACACACAGATG.................................................................................................................................................................................3311.001.00---------------------------1.00-----------------------
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCGCG.................................181.000.00--1.00------------------------------------------------
.......................................................................................................................................................................................TCAGAGCCTGGAAGGCCC.................................................1811.001.00---------------------------------1.00-----------------
...........................................................................................................................................................AGCCAGGTCGGGACCG...............................................................................161.000.00-------------------------------1.00-------------------
.....................................................AATGGACCCACACACAGATGTGG..............................................................................................................................................................................2311.001.00---------------------1.00-----------------------------
......................................................................................................................................................................................................CCCCGCGCCCCCGCGCCGGCG...............................2121.001.50--0.50---------------------------------------0.50--------
......................................................................................................................................................................................................CCCCGCGCCCCCGCGCAG..................................181.000.00------------------1.00--------------------------------
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCGGA.................................181.000.00--1.00------------------------------------------------
..........................................................................................CGGTCACCTGCAGAGGC...............................................................................................................................................1720.500.50-------------------------------------------0.50-------
......................................................................................................................................................................................................CCCCGCGCCCCCGCGCCGGA................................2020.501.50-------------------------------------0.50-------------
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCCGCT................................1930.330.33----------------------------------------------0.33----
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCCGC.................................1830.330.33-----------------------------------------------0.33---
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCCGGGG...............................2070.290.14--------0.14-----------------------------------------0.14
.................................................................................................................................................................................................................CGCGCCGCGCTCCCT..........................1560.170.17------------------------------------------------0.17--
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCCGGCG...............................2070.140.14-------------------------------------------------0.14-
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCCGGGGC..............................2170.140.14--------0.14------------------------------------------
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCCGGTGA..............................2170.140.14--0.14------------------------------------------------
.......................................................................................................................................................................................................CCCGCGCCCCCGCGCCG..................................1770.140.14--------0.14------------------------------------------

Antisense strand
CCCTGCAGGGCCCTTCTCCCGCGCCGCGCTGTCTCGCTGCTTCCTGGAGGGTAAATGGACCCACACACAGATGTGGCGCCGCGGGCTTGCCGGTCACCTGCAGAGGCCGGCACCCCTGTCGCGATGGGTGGTGGAGGTGGGGCAGAGGTGGGACGAGCCAGGTCGGGACCCGCAGCTGGCGAGTCAGAGCCTGGAAGGCCCCGCGCCCCCGCGCCGCGCTCCCTAAGTGCTCCGCCCGGCCGGTGGCGAC
......................................................................................................................((((........))))......(((..((((..(((..(((((..(((...)))...)))))..)))...)))).....)))..................................................
......................................................................................................................119..............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532883(GSM532883)
G871N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532889(GSM532889)
G576N. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577579(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
..........................CCATTTACCCTCCAGGAAGCAGCGAGACAGCG................................................................................................................................................................................................ 3212.002.00----2.00----------------------------------------------
....................................................................................................................................................................................................................................GCTCCGCCCGGCCGGTGC.... 182.000.00--1.00-----1.00------------------------------------------
..CGCGGCGCGGGAGAAGGGCCCTGCAG.............................................................................................................................................................................................................................. 2611.001.00------1.00--------------------------------------------
..............................................................................................................................GTCCCACCTCTGCCCCACCTCCACCACC................................................................................................ 2811.001.00-------------------------1.00-------------------------
..........................CAGGAAGCAGCGAGACAGCG............................................................................................................................................................................................................ 2011.001.00-------1.00-------------------------------------------
................................................................................CCTCTGCAGGTGACCGGCAAGCCCGC................................................................................................................................................ 2611.001.00--------------1.00------------------------------------
................................CCCTCCAGGAAGCAGCGAG....................................................................................................................................................................................................... 1911.001.00-------1.00-------------------------------------------
.............................................................................................................................................................................................................................CCGGGCGGAGCACTTAGG........... 1811.001.00------------1.00--------------------------------------
...........................................................................................................................................................................TCCAGGCTCTGACTCGCCAGCTGC....................................................... 2411.001.00-------------1.00-------------------------------------
.........CGGCGCGGGAGAAGGGC................................................................................................................................................................................................................................ 1711.001.00---------1.00-----------------------------------------
.......................................................................................................................................................................................................................GCGGAGCACTTAGGGAGCGC............... 2011.001.00-------1.00-------------------------------------------
......................................................................................................................................................................................................................GGCGGAGCACTTAGGGAGCGCG.............. 2211.001.00--------------------------1.00------------------------
...........................CCAGGAAGCAGCGAGACAGC........................................................................................................................................................................................................... 2011.001.00------------------------1.00--------------------------
..............CAGCGCGGCGCGGGAGA........................................................................................................................................................................................................................... 1711.001.00--------------------1.00------------------------------
.........................................................................................................................................................................................................CGCGCCCCCGCGCCGTGC............................... 181.000.00----------------------------------1.00----------------
...................................................................................................................................................................................................................GGAGCACTTAGGGAGCGCGGCG................. 2211.001.00------1.00--------------------------------------------
..............................................................................................................................................................................................................................GCCGGGCGGAGCACTTAG.......... 1811.001.00------1.00--------------------------------------------
................................................................................................................................................GAGGTGGGACGAGCCACC........................................................................................ 181.000.00------------------------------1.00--------------------
........GGCGCGGGAGAAGGGCC................................................................................................................................................................................................................................. 1720.500.50--------------------------------------------0.50------