ID: uc001bbo.2_intron_6_0_chr1_19557458_r
GENE: (16)
chr1:19557408-19557804-


(1)
AGO2.ip
(3)
B-CELL
(4)
BRAIN
(5)
BREAST
(6)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(3)
HELA
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(5)
SKIN
(1)
TESTES
(1)
UTERUS

Sense strand
TGGATCAAGACTACGCCAAGGTGTTGCTGTTGATAGATGATGAATACAAGGTACTGTCTTCAGAGGGGATGGAGAACATGCTAGCGGAGTCCGGTTTGGGGCCAGGTGGTCAAACACAGCGGCCCGGAGATGGAGTGCTCTCTGCACCCAGCACGTGTTTGGGCTCTAAGGCCATCCCGAAGAGAAATGATGGCTGTGTCTGCATTTGTGAAAACTCAGGTTCTTAACAGAACTGAATGTAAACCCTAAACTGAGTTCAAATCAACTGATTTGCAGTTTTATTCTTAAGGCTCTCTTTGATGGGGAAATTTCCTAACTCTTTCCTTGGGCTCTCTGGGTTTTTCAAGGTCACAGCTTTTCCAGCCACTCGGAATGTCTTGCGACAGCTACATGAGCT
..................................................................................................................((((((.(((((((.((((.((((.....)))))).....)).))))))).....(((((((............)))))))......))...))))..((((((((((((....))))).................)))))))............................................................................................................................................
..................................................................................................................115.............................................................................................................................................259........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM532874(GSM532874)
G699T. (cervix)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................................................................................................................................................................................................TGTAAACCCTAAACTCAG..............................................................................................................................................1813.000.0012.00-----------------1.00--------------------
.....................................................................................................................................................................................GAGAAATGATGGCTGTGTCTGCATTTGTGAAAACTCAGGTTCTTAACAGAACTGAATGTAAACCCTAAACTGAGT.............................................................................................................................................75111.0011.00-11.00-------------------------------------
......................................................................................................................................................................................AGAAATGATGGCTGTGTCTGCATTTGTGAAAACTCAGGTTCTTAACAGAACTGAATGTAAACCCTAAACTGAGT.............................................................................................................................................7416.006.00---4.00--2.00--------------------------------
.............................................................................................................................................................................................................................................TGTAAACCCTAAACTAAG..............................................................................................................................................183.000.003.00--------------------------------------
.....................TGTTGCTGTTGATAGATGATGA..................................................................................................................................................................................................................................................................................................................................................................2212.002.00--2.00------------------------------------
...................GGTGTTGCTGTTGATAGATGATGAATACAAGGT.........................................................................................................................................................................................................................................................................................................................................................3312.002.00----2.00----------------------------------
................................................................................................................................................................................................................................................................................................................................................................................CGGAATGTCTTGCGACAGCT.........2011.001.00--1.00------------------------------------
.......................................................................................................................CGGCCCGGAGATGGAGTT....................................................................................................................................................................................................................................................................181.000.00----------1.00----------------------------
...............................................................................................................................................................................CCCGAAGAGAAATGATG.............................................................................................................................................................................................................1711.001.00--------1.00------------------------------
..........................................................TTCAGAGGGGATGGAGAACATGCTAGCGGA.....................................................................................................................................................................................................................................................................................................................3011.001.00---------------------------1.00-----------
.......AGACTACGCCAAGGTGTTGCTGT...............................................................................................................................................................................................................................................................................................................................................................................2311.001.00-------------------------------1.00-------
...........TACGCCAAGGTGTTGCTGTTGATAGATGATG...................................................................................................................................................................................................................................................................................................................................................................3111.001.00----------------1.00----------------------
......................................................................................................................................................................................AGAAATGATGGCTGTGTCTGCAT................................................................................................................................................................................................2311.001.00-------------1.00-------------------------
............ACGCCAAGGTGTTGCTGTTGATAGATGATTAA.................................................................................................................................................................................................................................................................................................................................................................321.000.00----1.00----------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................ACTCGGAATGTCTTGCGACAGCT.........2311.001.00----------------------------------1.00----
........................................................................................................................................................................AGGCCATCCCGAAGATCT...................................................................................................................................................................................................................181.000.00-------------------1.00-------------------
.................AAGGTGTTGCTGTTGATAGATGATG...................................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------------------1.00----------
.............................................................................................................................................................................................................................................TGTAAACCCTAAACTCCG..............................................................................................................................................181.000.001.00--------------------------------------
.......................................................................................................................................................................................GAAATGATGGCTGTGTGAAC..................................................................................................................................................................................................201.000.00-------------------------------------1.00-
.....................TGTTGCTGTTGATAGATGATGAA.................................................................................................................................................................................................................................................................................................................................................................2311.001.00---------------1.00-----------------------
.....................................................................................................................................................................................GAGAAATGATGGCTGTGTCTGTA.................................................................................................................................................................................................231.000.00---------------------1.00-----------------
...................................................................GATGGAGAACATGCTAGCGGAGTCCGGTTTGGGG........................................................................................................................................................................................................................................................................................................3411.001.00-------1.00-------------------------------
.....................................................................................................................................................................................GAGAAATGATGGCTGTGTCTGCATTTGTGAAAAC......................................................................................................................................................................................3411.001.00------------------------------------1.00--
........................................................................................................................................................................................................................................................................................................................................................AAGGTCACAGCTTTTCCAGCC................................2111.001.00-----1.00---------------------------------
....................GTGTTGCTGTTGATAGATGATGA..................................................................................................................................................................................................................................................................................................................................................................2311.001.00-------------------------1.00-------------
.................AAGGTGTTGCTGTTGATAGATGATGAATAC..............................................................................................................................................................................................................................................................................................................................................................3011.001.00--------------------------------1.00------
.............................................................................................................................................................................................................................................TGTAAACCCTAAACTCTCG.............................................................................................................................................191.000.001.00--------------------------------------
............................................................................................GGTTTGGGGCCAGGTGGTC..............................................................................................................................................................................................................................................................................................1911.001.00-----1.00---------------------------------
........................................................................................................................................................................................................................................................................................................................................................................CAGCCACTCGGAATGTCTTGCGACAGCTACATGAG..3511.001.00-----------------------1.00---------------
................................................................................................................................................................................................................................................................................................................................................................................CGGAATGTCTTGCGACA............1711.001.00--------------------------1.00------------
..................................................GTACTGTCTTCAGAGGGGATGGAGAACAT..............................................................................................................................................................................................................................................................................................................................2911.001.00-----------1.00---------------------------
.............................................................................................................................................................................................................................................TGTAAACCCTAAACTTAG..............................................................................................................................................181.000.001.00--------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................TTTTCCAGCCACTCGGAAT.......................1911.001.00-----------------------------------1.00---
..............................................................................................................................................................................TCCCGAAGAGAAATGATGGC...........................................................................................................................................................................................................2011.001.00--------------1.00------------------------
..................AGGTGTTGCTGTTGATAGATGAT....................................................................................................................................................................................................................................................................................................................................................................2311.001.00---------1.00-----------------------------
.......................................................................................................................CGGCCCGGAGATGGACAGG...................................................................................................................................................................................................................................................................191.000.00-----------------------------1.00---------
...ATCAAGACTACGCCAAGGTGTTGCTGTTGACAG.........................................................................................................................................................................................................................................................................................................................................................................331.000.00--------------------------------------1.00
............................GTTGATAGATGATGAATACAA............................................................................................................................................................................................................................................................................................................................................................2111.001.00--1.00------------------------------------
......................................................................GGAGAACATGCTAGCGGAGTCGGG...............................................................................................................................................................................................................................................................................................................241.000.00------------1.00--------------------------

Antisense strand
TGGATCAAGACTACGCCAAGGTGTTGCTGTTGATAGATGATGAATACAAGGTACTGTCTTCAGAGGGGATGGAGAACATGCTAGCGGAGTCCGGTTTGGGGCCAGGTGGTCAAACACAGCGGCCCGGAGATGGAGTGCTCTCTGCACCCAGCACGTGTTTGGGCTCTAAGGCCATCCCGAAGAGAAATGATGGCTGTGTCTGCATTTGTGAAAACTCAGGTTCTTAACAGAACTGAATGTAAACCCTAAACTGAGTTCAAATCAACTGATTTGCAGTTTTATTCTTAAGGCTCTCTTTGATGGGGAAATTTCCTAACTCTTTCCTTGGGCTCTCTGGGTTTTTCAAGGTCACAGCTTTTCCAGCCACTCGGAATGTCTTGCGACAGCTACATGAGCT
..................................................................................................................((((((.(((((((.((((.((((.....)))))).....)).))))))).....(((((((............)))))))......))...))))..((((((((((((....))))).................)))))))............................................................................................................................................
..................................................................................................................115.............................................................................................................................................259........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM532874(GSM532874)
G699T. (cervix)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................................................................................................................................................................................................................................................................................TGGAAAAGCTGTGACCTTGAAAAACCC................................... 2711.001.00------------------------1.00--------------
....................................................ACTGTCTTCAGAGGGGGT....................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------------------------1.00-----
.........................................................................................................................................................................................................................................................................................................................................................AGGTCACAGCTTTTCAATG................................. 191.000.00--------------------1.00------------------
....................................................ACTGTCTTCAGAGGGGAGT...................................................................................................................................................................................................................................................................................................................................... 191.000.00------------------------------1.00--------
..............................................................GAGGGGATGGAGAACCT.............................................................................................................................................................................................................................................................................................................................. 171.000.001.00--------------------------------------
....................................................ACTGTCTTCAGAGGGGATGT..................................................................................................................................................................................................................................................................................................................................... 201.000.00----------------------1.00----------------
..............................................................GAGGGGATGGAGAACCTTC............................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------1.00---------------------