ID: uc001bbm.1_intron_11_0_chr1_19488231_r
GENE: UBR4(19)
chr1:19488181-19488370-


(5)
B-CELL 		(5)
BRAIN 		(5)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(6)
HELA 		(1)
KIDNEY 		(9)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES

Sense strand
AAACTCTGCACTTTTACGATCACACAGAAAGAATTCATGAACCAGCATTGGTAAGGGTAGTTCTTCCTTTAAGGTGAAGATTTGCTGGGCACCGATTGTTGGGACTTCTGAGCTTATTTGCTGGTTCTTGTTCTTTGTAGGTACCACTGTCACACCTGTAAAATGGTGGATGGCGTGGGTGTCTGCACAG
.......................................................................((((..(((....((.((((.....)))).))...)))..))))...........................................................................
.................................................................66.....................................................121...................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577740(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029132(GSM416761)
MB-MDA231. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040033(GSM532918)
G603T. (cervix)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTAAGGGTAGTTCTTCCTTTAAGGTGAAGATTTGCTGGGCACCGATTGTTGGGACTTCTGAGCTTATTTGCTGGTTCTTGTTCTTTGTAG..................................................90194.0094.0077.0010.00---4.00----------2.00-1.00---------------------------------------
........................CAGAAAGAATTCATGAACCAGCATTGGT..........................................................................................................................................2812.002.00---1.00---------1.00--------------------------------------------
............................AAGAATTCATGAACCAGCATTGGT..........................................................................................................................................2412.002.00------1.00-------------------------1.00-------------------------
.......................ACAGAAAGAATTCATGAACCAGCATTGG...........................................................................................................................................2812.002.00----1.00---1.00-------------------------------------------------
.......................ACAGAAAGAATTCATGAACCAGCATTGGTA.........................................................................................................................................3012.002.00-----------2.00----------------------------------------------
...........................AAAGAATTCATGAACTCTG................................................................................................................................................192.000.00---------2.00------------------------------------------------
...................TCACACAGAAAGAATTCATGAACCAGCATTGGTA.........................................................................................................................................3412.002.00-------2.00--------------------------------------------------
...................................................................................................TGGGACTTCTGAGCTCTG.........................................................................182.000.00---------1.00-----------------------1.00------------------------
....................CACACAGAAAGAATTCATGAACC...................................................................................................................................................2312.002.00--------------------------1.00----------------------1.00--------
........................CAGAAAGAATTCATGAACCAGCATTG............................................................................................................................................2612.002.00---1.001.00-----------------------------------------------------
........................................................................................................................................................................GATGGCGTGGGTGTCGTG....182.000.00---------------2.00------------------------------------------
........CACTTTTACGATCACACAGAAAG...............................................................................................................................................................2312.002.00------------2.00---------------------------------------------
...........................AAAGAATTCATGAACCAGCATTGGTACC.......................................................................................................................................282.000.00--2.00-------------------------------------------------------
............................AAGAATTCATGAACCAGCA...............................................................................................................................................1921.501.50------------------------------1.00-----------------------0.50---
....................CACACAGAAAGAATTCATGAAC....................................................................................................................................................2211.001.00-------1.00--------------------------------------------------
.....................................................................................................................TTGCTGGTTCTTGTTCTTTTT....................................................211.000.00----------------------------------------1.00-----------------
......................................................................AAGGTGAAGATTTGCTGG......................................................................................................1811.001.00--1.00-------------------------------------------------------
................................................................TCCTTTAAGGTGAAGATTTGCTGGGCACCGA...............................................................................................3111.001.00---------------------------------------1.00------------------
.............TTACGATCACACAGAAAG...............................................................................................................................................................1811.001.00------1.00---------------------------------------------------
.............TTACGATCACACAGAAAGAATT...........................................................................................................................................................2211.001.00------------------------1.00---------------------------------
..................................................................................................................................................................ATGGTGGATGGCGTGGGTGT........2011.001.00------------------------------------------1.00---------------
..................................................................................................................................................................ATGGTGGATGGCGTGGGTGTCT......2211.001.00-----------------------1.00----------------------------------
.................................................................................................GTTGGGACTTCTGAGCTTATTTGCTGGTTCTT.............................................................3211.001.00-----------------------------------------1.00----------------
...........................................................................................................................................................CTGTAAAATGGTGGATGGCGTGGGT..........2511.001.00----------------------------------1.00-----------------------
..................................TCATGAACCAGCATTTTT..........................................................................................................................................181.000.00---------------------1.00------------------------------------
...............................................TTGGTAAGGGTAGTTTTT.............................................................................................................................181.000.00-------------------------------1.00--------------------------
...............ACGATCACACAGAAAGAATTCATGAA.....................................................................................................................................................2611.001.00------1.00---------------------------------------------------
.......................ACAGAAAGAATTCATGAAC....................................................................................................................................................1911.001.00-----------------1.00----------------------------------------
...............ACGATCACACAGAAAGAATTCAT........................................................................................................................................................2311.001.00--1.00-------------------------------------------------------
............................AAGAATTCATGAACCAGCATTGGTAAGG......................................................................................................................................2811.001.00-------------------------1.00--------------------------------
.................................TTCATGAACCAGCATTG............................................................................................................................................1711.001.00----------------------------1.00-----------------------------
...............................................................................................................................................................AAAATGGTGGATGGCGTGGGGGT........231.000.00------1.00---------------------------------------------------
...............ACGATCACACAGAAAGAATTCATG.......................................................................................................................................................2411.001.00----------------------1.00-----------------------------------
.......GCACTTTTACGATCACACAGA..................................................................................................................................................................2111.001.00---1.00------------------------------------------------------
....................CACACAGAAAGAATTCATGAACCAGC................................................................................................................................................2611.001.00--------------1.00-------------------------------------------
........CACTTTTACGATCACACAGAAAGAATTCATGAA.....................................................................................................................................................3311.001.00------------------------------------1.00---------------------
....................CACACAGAAAGAATTCATGAA.....................................................................................................................................................2111.001.00------------------------------------------------1.00---------
..........CTTTTACGATCACACAGAAAGAATTCAA........................................................................................................................................................281.000.00---------------------------------------------1.00------------
....................CACACAGAAAGAATTCAT........................................................................................................................................................1811.001.00-------------1.00--------------------------------------------
.....................ACACAGAAAGAATTCATGAACC...................................................................................................................................................2211.001.00----1.00-----------------------------------------------------
..........CTTTTACGATCACACAGAAAGAATTCATG.......................................................................................................................................................2911.001.00-----------------------------------------------1.00----------
.....................ACACAGAAAGAATTCATGAACCAGCATTGGTACC.......................................................................................................................................341.000.00--------1.00-------------------------------------------------
.....................ACACAGAAAGAATTCATGAACCAGCA...............................................................................................................................................2611.001.00--1.00-------------------------------------------------------
....................CACACAGAAAGAATTCATG.......................................................................................................................................................1911.001.00-------------------------------------------1.00--------------
............................................................................................................................................................TGTAAAATGGTGGATGGCGTGGG...........2311.001.00-----------------------------------1.00----------------------
.................................................................................................................................................................AATGGTGGATGGCGTGGG...........1811.001.00--------------------------------------------------1.00-------
.............................AGAATTCATGAACCAGCATTGGTA.........................................................................................................................................2411.001.00----------------------------------------------1.00-----------
........................CAGAAAGAATTCATGAACCAGCATTGGTACC.......................................................................................................................................311.000.00---1.00------------------------------------------------------
............................AAGAATTCATGAACCAGCATTGGTACT.......................................................................................................................................271.000.00--------------------------------------------1.00-------------
.................................................................................................................................................................AATGGTGGATGGCGTGGGTGT........2111.001.00--------------------1.00-------------------------------------
....................................................................................................................................................................GGTGGATGGCGTGGGTGTGT......201.000.00-------------------------------------1.00--------------------
..............TACGATCACACAGAAAGAATTCA.........................................................................................................................................................2311.001.00-----------------------------1.00----------------------------
........................................................................................................................................................CACCTGTAAAATGGTGGATGGCGTGGGTGT........3011.001.00---------------------------1.00------------------------------
..................................................................................................................................................CTGTCACACCTGTAAAATGGT.......................2111.001.00-------------------1.00--------------------------------------
.......................................................................................................................................................................GGATGGCGTGGGTGTAGT.....181.000.00--------------1.00-------------------------------------------
.......................ACAGAAAGAATTCATGAACCAGCATTGGT..........................................................................................................................................2911.001.00--------1.00-------------------------------------------------
.........................................................................................................................................................ACCTGTAAAATGGTGGATGGCGTGGG...........2611.001.00----1.00-----------------------------------------------------
.....................ACACAGAAAGAATTCATG.......................................................................................................................................................1820.500.50-----------------0.50----------------------------------------
......................CACAGAAAGAATTCATGAA.....................................................................................................................................................1920.500.50----------------------------------------------------0.50-----
..........................GAAAGAATTCATGAACC...................................................................................................................................................1720.500.50-----------------------------------------------------0.50----
.....................ACACAGAAAGAATTCAT........................................................................................................................................................1730.330.33--------------------------------------------------------0.33-
......................CACAGAAAGAATTCATGA......................................................................................................................................................1830.330.33-------------------------------------------------------0.33--

Antisense strand
AAACTCTGCACTTTTACGATCACACAGAAAGAATTCATGAACCAGCATTGGTAAGGGTAGTTCTTCCTTTAAGGTGAAGATTTGCTGGGCACCGATTGTTGGGACTTCTGAGCTTATTTGCTGGTTCTTGTTCTTTGTAGGTACCACTGTCACACCTGTAAAATGGTGGATGGCGTGGGTGTCTGCACAG
.......................................................................((((..(((....((.((((.....)))).))...)))..))))...........................................................................
.................................................................66.....................................................121...................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577740(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029132(GSM416761)
MB-MDA231. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191544(GSM715654)
126genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040033(GSM532918)
G603T. (cervix)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................AGCTTATTTGCTGGTTTGTG............................................................ 201.000.00----------1.00-----------------------------------------------
..................................................................................................................TATTTGCTGGTTCTTCCAG......................................................... 191.000.00--------------------------------------1.00-------------------
..................................................................CTTTAAGGTGAAGATTCTAT........................................................................................................ 201.000.00----------1.00-----------------------------------------------
....................................................................................................................................................................CCCACGCCATCCACC........... 1560.170.17---------------------------------------------------------0.17