ID: uc001ayt.2_intron_9_0_chr1_16813157_r.5p
GENE: CROCCP3(5)
chr1:16816913-16817162-


(1)
B-CELL
(4)
BREAST
(1)
CELL-LINE
(12)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(1)
OTHER
(17)
SKIN
(1)
TESTES

Sense strand
GCCGCAAGGAGCTGGAGCAGCGGGAGGCGGCATGGAGGCGCGAGGAGGAGGTGGGCATGGGGGTGCAGGGAGGCCAGCCTGACCCAAGGGGAGGGGCACTGCAGAGGAGGGAGGACTCAGAAGCCTGGAGAGGGAGAGGGAGCACTGTCCAAGGGAGCCTGTTAGCAGAAGTAAATAGCCATCATCACAATAGCTGGTCTTTATCAATGCGTAGCATGTACCACGTGCACGGTGTGCGTTGACCTTTATT
....................................................................................................................................(((.((......)).)))..((..((.((((.((....)).))))))..))...................................................................
...............................................................................................................................128......................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR189784SRR040037(GSM532922)
G243T. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
GSM532890(GSM532890)
G576T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
....................................................................................................................................GGAGAGGGAGCACTGTAGCT..................................................................................................2023.000.0017.003.00----1.00------1.00--1.00-------------------------
....................................................................................................................................GGAGAGGGAGCACTGTTGCT..................................................................................................205.000.003.00--1.00------1.00-------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTAGC...................................................................................................195.000.002.00-----1.00-1.00---1.00-----------------------------
...........................................................................................AGGGGCACTGCAGAGGAGGGAGGACCCAG..................................................................................................................................294.000.00--4.00---------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGCAGC...................................................................................................193.000.003.00-----------------------------------------
.....................................................................................................................................GAGAGGGAGCACTGTAGCT..................................................................................................192.000.00-----------1.00---1.00--------------------------
.......................................................................................................................................................................................................................ATGTACCACGTGCACTAT.................181.000.00----1.00-------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTTGT...................................................................................................191.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTATG...................................................................................................191.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGATGT...................................................................................................191.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTCGC...................................................................................................191.000.00---1.00--------------------------------------
.....................................................................................................................................GAGAGGGAGCACTGTATG...................................................................................................181.000.00--------------------1.00---------------------
....................................................................................................................................GGAGAGGGAGCACTGTAGCG..................................................................................................201.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTCGCA..................................................................................................201.000.00-----1.00------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTACCG..................................................................................................201.000.00-----1.00------------------------------------
........GAGCTGGAGCAGCGGGGT................................................................................................................................................................................................................................181.000.00-------1.00----------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTTGG...................................................................................................191.000.001.00-----------------------------------------
.....................................................................................................................................GAGAGGGAGCACTGTATCT..................................................................................................191.000.00-1.00----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTTGC...................................................................................................191.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTGGCT..................................................................................................201.000.00---1.00--------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTAG....................................................................................................181.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGAACC...................................................................................................191.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTTGGG..................................................................................................201.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTGGC...................................................................................................191.000.00---------1.00--------------------------------
..................................................................................................................................................................TAGCAGAAGTAAATAATTG.....................................................................191.000.00--------------1.00---------------------------
..CGCAAGGAGCTGGAGACG......................................................................................................................................................................................................................................181.000.00-------------------1.00----------------------
.................................................................................................ACTGCAGAGGAGGGAGGGCA.....................................................................................................................................201.000.00------------------1.00-----------------------
....................................................................................................................................GGAGAGGGAGCACTGTTGTT..................................................................................................201.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTAAAA..................................................................................................201.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTCGAG..................................................................................................201.000.001.00-----------------------------------------
....................................................................................................................................GGAGAGGGAGCACTGTAGTT..................................................................................................201.000.001.00-----------------------------------------
...................................................................................................................CTCAGAAGCCTGGAGAGGGAGAGGGAGCAC.........................................................................................................3020.500.50----------------------0.50-------------------
...........................CGGCATGGAGGCGCGAGGA............................................................................................................................................................................................................1930.330.33-------0.33----------------------------------
..................................................................................................................................................................TAGCAGAAGTAAATAGC.......................................................................1730.330.33----------------------------0.33-------------
......AGGAGCTGGAGCAGCGGG..................................................................................................................................................................................................................................1840.250.25------------------------------------0.25-----
...........CTGGAGCAGCGGGAGGC..............................................................................................................................................................................................................................1750.200.20--------------------------0.20---------------
.........................................................TGGGGGTGCAGGGAGGC................................................................................................................................................................................1780.120.12---------------------------0.12--------------

Antisense strand
GCCGCAAGGAGCTGGAGCAGCGGGAGGCGGCATGGAGGCGCGAGGAGGAGGTGGGCATGGGGGTGCAGGGAGGCCAGCCTGACCCAAGGGGAGGGGCACTGCAGAGGAGGGAGGACTCAGAAGCCTGGAGAGGGAGAGGGAGCACTGTCCAAGGGAGCCTGTTAGCAGAAGTAAATAGCCATCATCACAATAGCTGGTCTTTATCAATGCGTAGCATGTACCACGTGCACGGTGTGCGTTGACCTTTATT
....................................................................................................................................(((.((......)).)))..((..((.((((.((....)).))))))..))...................................................................
...............................................................................................................................128......................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR189784SRR040037(GSM532922)
G243T. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
TAX577739(Rovira)
total RNA. (breast)
GSM532890(GSM532890)
G576T. (cervix)
SRR040039(GSM532924)
G531T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
........................................................................................................AGGAGGGAGGACTCAGAA................................................................................................................................ 181.000.00---------------------1.00--------------------
...............................................................................................................................................................................TAGCCATCATCACAAGC.......................................................... 171.000.00-----------------1.00------------------------
........................................................ATGGGGGTGCAGGGAATTG............................................................................................................................................................................... 191.000.00----1.00-------------------------------------
.......................................CCCATGCCCACCTCCTCCTCGC............................................................................................................................................................................................. 2240.750.75------------------------0.250.25-----0.25----------
.......................................CCCCCATGCCCACCTCCTCCTCGC........................................................................................................................................................................................... 2440.750.75-------------------------0.250.25-----0.25---------
.......................................CCCCATGCCCACCTCCTCCTCGC............................................................................................................................................................................................ 2340.500.50---------------------------------0.25-----0.25--
.......................................CATGCCCACCTCCTCCTCGC............................................................................................................................................................................................... 2040.500.50---------------------------0.25-------0.25------
...........................................................................................................CCCTCTCCAGGCTTCTGAGTCCTCCCT.................................................................................................................... 2720.500.50-----------------------0.50------------------
.......................................TGCCCACCTCCTCCTCGC................................................................................................................................................................................................. 1840.500.50-------------------------------------0.250.25---
.......................................CACCCCCATGCCCACCTCCTCCTCGC......................................................................................................................................................................................... 2640.500.50------------------------0.25---------0.25-------
.......................................ACCCCCATGCCCACCTCCTCCTCGC.......................................................................................................................................................................................... 2540.250.25-----------------------------0.25------------
....................................CCATGCCCACCTCCTCCTCGCGCC.............................................................................................................................................................................................. 2440.250.25------------------------------0.25-----------
..........................................................................................................................CCTCTCCCTCTCCAGGC............................................................................................................... 1770.140.14----------------------------------------0.14-