ID: uc001ayr.3_intron_1_0_chr1_16802558_r
GENE: (2)
chr1:16802508-16802943-


(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(11)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
ACGAGAGCCTTGCTCAGGACAAGTTGGATCTGAACCGCCTTGTCACCCAGGTACGCTGTGCACCTGCGGGCCCACCTGCCTTGCCCACCCGTCCTCCCCACTCAGTAAGGCACCCCGGGCCCAGCCCTGTACCTGTCTTGGCCCCTGCCTCCCTTTCTGTCTCTGGTTCTCTGTCTGTCTCTGTCTGTCTATCCTCTCTAGGCATCAAAGCACAGAAGCTCCATGGGCCCTCCTCATCTCTCCCTCCCCAGTGTCCCACACACCCAAGGGCCCTGTCCCTCATTGCCTGGGAGCCTCCCCTGGGCTATTGTGGCTGGTGGGTGGGTGGAGGAGGCGTCCTGGTCCTGGGAGGGATGCCCTGCTCACGAGGCCCCACTCCTACCCAGGCCACAGCTGGAGGAAGAAAAGTGCGCCCTGCAGGGCCGGCAGCGGCAGG
..............................................................................................................................................................................................................................................................................................(((((.(((..(((..((((.....))))...)))..))).(((.(((((((((..((....))))))))).)).)))..(((......)))...)))))..................................................
..............................................................................................................................................................................................................................................................................................287................................................................................................386................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR029128(GSM416757)
H520. (cell line)		SRR189782SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR189783SRR343336SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................................................................................................................................................................................................CGAGGCCCCACTCCTACCCAGT.................................................22123.003.00-5.001.001.001.002.00-1.001.00----1.00--1.001.00-1.00-1.00-----1.00-----1.00--1.00-----1.001.00-1.00-----------
.............................................................................................................................................................................................................................................................................................................................................................................CGAGGCCCCACTCCTACCCAGA.................................................2217.003.00--1.00--------1.00----1.00--------------1.00--1.001.00--1.00------------------
.................................................................................................................................................................................TCTCTGTCTGTCTATGTCT................................................................................................................................................................................................................................................196.000.00---1.00------2.00-1.00----------1.00-----------------1.00---------------
.............................................................................................................................................................................................................................................................................................................................................................................CGAGGCCCCACTCCTACCCAG..................................................2113.003.00-----------1.00-------------1.00-------------1.00-----------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCGGCAGCGGCCGC181.000.00----------------------------------------------1.00----------
.........................................................................................................................................................................TCTGTCTGTCTCTGTCT..........................................................................................................................................................................................................................................................1701.001.00----------------------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................GCTGGTGGGTGGGTGGAGCT........................................................................................................201.000.00--1.00------------------------------------------------------
.......................................................................................................................................................................................................................................................CCAGTGTCCCACACACCCAAGGGCCCTGTCC..............................................................................................................................................................3111.001.00------------1.00--------------------------------------------
........................................................................................................................................................................CTCTGTCTGTCTCTGTCTGTCTCC....................................................................................................................................................................................................................................................241.000.00--------1.00------------------------------------------------
...................................................................................CCCACCCGTCCTCCCCGCGC.............................................................................................................................................................................................................................................................................................................................................201.000.00-----------------------------1.00---------------------------
.............................................................................................................GCACCCCGGGCCCAGCCCCGT..................................................................................................................................................................................................................................................................................................................211.000.00------1.00--------------------------------------------------
........................TGGATCTGAACCGCCTTGTCACCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................2711.001.001.00--------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................CACGAGGCCCCACTCCTACCCA...................................................2211.001.00--------------------1.00------------------------------------
.........................................................................................................................................................................TCTGTCTGTCTCTGTCTAC........................................................................................................................................................................................................................................................1901.001.00-------1.00-------------------------------------------------
.....................................................................................................................................................................................................................................CTCCTCATCTCTCCCCG..............................................................................................................................................................................................171.000.00------1.00--------------------------------------------------
.............................................................................................................................................................................TCTGTCTCTGTCTGTCTATCCT.................................................................................................................................................................................................................................................2211.001.00--------------------------------1.00------------------------
.............................................................................................................................................................................................................................................................................................................................................................................CGAGGCCCCACTCCTACCCAGC.................................................2211.003.00------------------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................................................TGGGTGGGTGGAGGAGGAACA..................................................................................................211.000.00------------------1.00--------------------------------------
..........................................................................................................................................................................................................................................................................................................................TGGTGGGTGGGTGGAGCAG.......................................................................................................191.000.00--------------------------------------------1.00------------
......................GTTGGATCTGAACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................1631.001.00----1.00----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................TGGGTGGGTGGAGGAGGCGTCC.................................................................................................2230.670.67-----------------0.33------------------------------0.33--------
............................................................................................................................................................................................................................................................................................................................GTGGGTGGGTGGAGGAGGCG....................................................................................................2030.670.67-------------------------------------------------0.330.33------
........CTTGCTCAGGACAAGTTGGATCTGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................2730.670.67-----------------------------------------------0.67---------
......................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGGAGGAAGAAAAGT...........................1920.500.50-------------0.50-------------------------------------------
..................................................GTACGCTGTGCACCTGC.................................................................................................................................................................................................................................................................................................................................................................................1720.500.50-------------0.50-------------------------------------------
.........TTGCTCAGGACAAGTTGGATCTGAACCGC..............................................................................................................................................................................................................................................................................................................................................................................................................2920.500.500.50--------------------------------------------------------
......................................................................................................................................................CCCTTTCTGTCTCTGGTTCT..........................................................................................................................................................................................................................................................................2020.500.50---0.50-----------------------------------------------------
.........TTGCTCAGGACAAGTTGGATCTGAACC................................................................................................................................................................................................................................................................................................................................................................................................................2720.500.500.50--------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGGAGGAAGAAAA.............................1850.400.40------------------------------------------------------0.200.20-
................GGACAAGTTGGATCTGAACCGCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................2530.330.330.33--------------------------------------------------------
.............TCAGGACAAGTTGGATCTGAACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2630.330.330.33--------------------------------------------------------
.................GACAAGTTGGATCTGAACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................2230.330.330.33--------------------------------------------------------
......................GTTGGATCTGAACCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................1730.330.33----0.33----------------------------------------------------
...AGAGCCTTGCTCAGGACAAGTTGGATC......................................................................................................................................................................................................................................................................................................................................................................................................................2730.330.330.33--------------------------------------------------------
..............................................................................................................................................................GTCTCTGGTTCTCTGTC.....................................................................................................................................................................................................................................................................1740.250.25---------------------------------------------------0.25-----
...................CAAGTTGGATCTGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................1640.250.250.25--------------------------------------------------------
..............CAGGACAAGTTGGATCTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................2040.250.25------------------0.25--------------------------------------
.............TCAGGACAAGTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................1640.250.25----------------------------------------------------0.25----
..........................................................................................................................................................................................................................CTCCATGGGCCCTCCT..........................................................................................................................................................................................................1650.200.20-----------------------------------------------------0.20---
.....................AGTTGGATCTGAACC................................................................................................................................................................................................................................................................................................................................................................................................................1560.170.17-----0.17---------------------------------------------------

Antisense strand
ACGAGAGCCTTGCTCAGGACAAGTTGGATCTGAACCGCCTTGTCACCCAGGTACGCTGTGCACCTGCGGGCCCACCTGCCTTGCCCACCCGTCCTCCCCACTCAGTAAGGCACCCCGGGCCCAGCCCTGTACCTGTCTTGGCCCCTGCCTCCCTTTCTGTCTCTGGTTCTCTGTCTGTCTCTGTCTGTCTATCCTCTCTAGGCATCAAAGCACAGAAGCTCCATGGGCCCTCCTCATCTCTCCCTCCCCAGTGTCCCACACACCCAAGGGCCCTGTCCCTCATTGCCTGGGAGCCTCCCCTGGGCTATTGTGGCTGGTGGGTGGGTGGAGGAGGCGTCCTGGTCCTGGGAGGGATGCCCTGCTCACGAGGCCCCACTCCTACCCAGGCCACAGCTGGAGGAAGAAAAGTGCGCCCTGCAGGGCCGGCAGCGGCAGG
..............................................................................................................................................................................................................................................................................................(((((.(((..(((..((((.....))))...)))..))).(((.(((((((((..((....))))))))).)).)))..(((......)))...)))))..................................................
..............................................................................................................................................................................................................................................................................................287................................................................................................386................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR029128(GSM416757)
H520. (cell line)		SRR189782SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR189783SRR343336SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
..................................CCGCCTTGTCACCCAGGC................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00------------------------------1.00--------------------------
................................................................................................................CCCCGGGCCCAGCCCTGTACGCC............................................................................................................................................................................................................................................................................................................. 231.000.00---------------1.00-----------------------------------------
..........................................................................................................................................................................................................................................................................AGGGCCCTGTCCCTCACCCG...................................................................................................................................................... 201.000.00--1.00------------------------------------------------------
................................................................................................................................................................................................................AGCACAGAAGCTCCATGGGCCCTCCTCATCG..................................................................................................................................................................................................... 311.000.00--------------1.00------------------------------------------
....................................................................................CCACCCGTCCTCCCCAGAT............................................................................................................................................................................................................................................................................................................................................. 191.000.00----------------------1.00----------------------------------
..........................................................................................................................................................................ACAGACAGAGACAGACAG........................................................................................................................................................................................................................................................ 1801.001.00---------1.00-----------------------------------------------
...............................................................................................................................................................................................................................................................................CCTGTCCCTCATTGCATGC.................................................................................................................................................. 191.000.00-------------------------------------1.00-------------------
................................................................................................................................................................................................................AGCACAGAAGCTCCATGGGCCCTCCTCTG....................................................................................................................................................................................................... 291.000.00--------------1.00------------------------------------------
................................................................................................................CCCCGGGCCCAGCCCAT................................................................................................................................................................................................................................................................................................................... 171.000.00--------------------------1.00------------------------------
..........................................................................................................................................................................................................................................CATCTCTCCCTCCCCTTTG....................................................................................................................................................................................... 191.000.00----------------------------------------1.00----------------
.........................................................................................................................................................AGACAGACAGAGAACCAGAGACAGAAA................................................................................................................................................................................................................................................................ 2711.001.001.00--------------------------------------------------------
................................................................................................................................................................................................................AGCACAGAAGCTCCATGGGCCCTCCTCATCTG.................................................................................................................................................................................................... 321.000.00---------------1.00-----------------------------------------
...........................................................................................................................................................AGAGACAGACAGAGAACCAGAGACAGA.............................................................................................................................................................................................................................................................. 2711.001.001.00--------------------------------------------------------
.............................................................................................................................................................................AGAGAGGATAGACAGACAGAGACAGA............................................................................................................................................................................................................................................. 2611.001.001.00--------------------------------------------------------
........................................................................................................................................................................AGACAGAGACAGACAGAG.......................................................................................................................................................................................................................................................... 1801.001.00---------1.00-----------------------------------------------
................................................................................................................AGGGCTGGGCCCGGGG.................................................................................................................................................................................................................................................................................................................... 1670.140.14--------------------------------------------------------0.14