ID: uc001ayp.3_intron_1_0_chr1_16770228_f.3p
GENE: (2)
chr1:16774165-16774414+


(7)
B-CELL
(1)
BRAIN
(3)
CELL-LINE
(3)
CERVIX
(2)
HEART
(1)
HELA
(5)
OTHER
(10)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GACTTAAGCCTTTCCTTGATTATATTTTCTGTGTCTTCCCTTTAGCAAGAATGGATTCGATTTGAATCCCACAGTAAGGTTTGCCGATCTGTCTCAGCTGGTTAGAGATGCCTTGCGGGCAAAAGGCCCAGTAGTGTGGTAGAAAACCTTGGCTGGAAGGGGGCTCAGGGCTCAGCGCTCAGCCTAACCTGTGCTTTCAGGGGAGCTCTTTGCTCAGGCCCCGGTGGATCAGTTTCCTGGCACAGCTGTG
.......................................................................................(((.((.(((((((((.....((((((((((((.....)))).))))...))))...))))..))))))).))).........................................................................................
.......................................................................................88...............................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR343336SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR343337SRR343334SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
............................................................................................CTCAGCTGGTTAGAGCACC...........................................................................................................................................1921.000.006.00-5.00-4.002.002.001.00--1.00----------------------
..................................................................................................................................................CCTTGGCTGGAAGGGTTTG.....................................................................................1911.000.00-4.00-4.00----2.00-----------------1.00------
............................................................................................CTCAGCTGGTTAGAGCAC............................................................................................................................................184.000.00-----1.00-------------1.001.001.00-----------
............................................................................................CTCAGCTGGTTAGAGCGCA...........................................................................................................................................193.000.001.00---1.001.00---------------------------
............................................................................................CTCAGCTGGTTAGAGCACG...........................................................................................................................................192.000.00-------2.00-------------------------
..................................................................................................................................................CCTTGGCTGGAAGGGTTT......................................................................................182.000.00-1.00-1.00-----------------------------
............................................................................................CTCAGCTGGTTAGAGCGC............................................................................................................................................182.000.00-------------1.001.00------------------
.....................................................................................................................................................TGGCTGGAAGGGGGCATG...................................................................................181.000.00------------------------1.00--------
....................................................................................CGATCTGTCTCAGCTGGTT...................................................................................................................................................1911.001.00------------1.00--------------------
....................................................................................................................................................................................................................................TCAGTTTCCTGGCACTGTT...191.000.00-------------------------1.00-------
..................................................................................................................................GTAGTGTGGTAGAAAAGAGA....................................................................................................201.000.00----------------------1.00----------
........................................................................................................................................................................................................................GGCCCCGGTGGATCAGTT................1811.001.00------------------1.00--------------
.............................................................................................................................................................AGGGGGCTCAGGGCTCAGCGCTCAGCCTAA...............................................................3011.001.00-----------------------1.00---------
.........CTTTCCTTGATTATATTTT..............................................................................................................................................................................................................................1911.001.00-----------1.00---------------------
............................................................................................CTCAGCTGGTTAGAGCTGG...........................................................................................................................................191.000.00---------------------------1.00-----
........................TTTTCTGTGTCTTCCCT.................................................................................................................................................................................................................1740.500.50----------------------------0.50----
....................................................................................................................................................TTGGCTGGAAGGGGGC......................................................................................1630.330.33-------------------------------0.33-
......................................................................................................................................................................................................................CAGGCCCCGGTGGAT.....................1570.290.29--------------------------------0.29

Antisense strand
GACTTAAGCCTTTCCTTGATTATATTTTCTGTGTCTTCCCTTTAGCAAGAATGGATTCGATTTGAATCCCACAGTAAGGTTTGCCGATCTGTCTCAGCTGGTTAGAGATGCCTTGCGGGCAAAAGGCCCAGTAGTGTGGTAGAAAACCTTGGCTGGAAGGGGGCTCAGGGCTCAGCGCTCAGCCTAACCTGTGCTTTCAGGGGAGCTCTTTGCTCAGGCCCCGGTGGATCAGTTTCCTGGCACAGCTGTG
.......................................................................................(((.((.(((((((((.....((((((((((((.....)))).))))...))))...))))..))))))).))).........................................................................................
.......................................................................................88...............................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR343336SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR343337SRR343334SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
GSM532874(GSM532874)
G699T. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.....................................................................................AGGCATCTCTAACCAGCTGAGACAGATC......................................................................................................................................... 2811.001.00---------1.00-----------------------
...........................................................TTACTGTGGGATTCAAAT............................................................................................................................................................................. 1811.001.00-----------------1.00---------------
..................................................................GAGACAGATCGGCAAACCTTACTGTGGGA........................................................................................................................................................... 2911.001.00---------1.00-----------------------
........................................................................................................................................................................................................................................TTTCCTGGCACAGCTTTAA 191.000.00---------------1.00-----------------
.......................TAAAGGGAAGACACAGAAAAT.............................................................................................................................................................................................................. 2111.001.00------1.00--------------------------
.........................................................................................................................................................TGGAAGGGGGCTCAGGGCCTGT........................................................................... 221.000.00----------------1.00----------------
............................................................................................................................................................................................TCCCCTGAAAGCACAG.............................................. 1630.670.67-----------------------------0.330.33--