ID: uc001ayl.1_intron_9_0_chr1_16735699_r
GENE: SPATA21(7)
chr1:16735649-16736145-


(1)
AGO2.ip
(7)
B-CELL
(2)
BRAIN
(5)
BREAST
(16)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(4)
LIVER
(1)
OTHER
(11)
SKIN
(1)
UTERUS

Sense strand
GAACTCTTGCACCAGAGCAGCGAGAGAACCCTGAGCTACGCCAAGGCGCGGTAGGAGCCCCCGCTGCTCACCCGCCCGCTCCTGAAAGGCCCCAAGATCAGAGCCTTGTCCCGGATGCAGGTCCCTGTCCCTGCACCTGCCTGTTCCCTCGTGTGTCCCCCTCTCTCCATTTCTCCTCATGTGTCTCCTCTCCGCATCTCCCATGTCTCTGCCTCCTCTCCCACTTCTGACCCCTTTTCTAACTCCCCCGAAGGGGTCTCCCTCTAGTCCCCTCTCCTCTGTCCCACTTCTCCTCTGGATCTCCTTTTTCCTGCCATTCTTGATCTCTCCGGGCTCCCCAAAGCCTCCCCCACGACCTCCTCCTGCAGGCTCCCCCAACCCCTCCCCTAGCTATCAGCAGGGTGGGCGGCCGGATGTTGCCCTGGGTCGGGGTTCTGTCCTCTGCAGGCAGGAGCCGGAAGAGCAGAGCCTCCAAAAGCTTTATCAAAACCGGGAGA
...........................................................................................................................................................................................................................(((......(((((((((............)))))))))......................................(((((....................)))))....)))....................................................................................................................................................................
...................................................................................................................................................................................................................212..............................................................................................................................341..........................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040015(GSM532900)
G623T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR037931(GSM510469)
293GFP. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040039(GSM532924)
G531T. (cervix)
SRR038861(GSM458544)
MM466. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................................................................................................................................TCTCCCACTTCTGACACCA......................................................................................................................................................................................................................................................................1932.000.0019.00-5.001.004.00----------------------1.00-------1.00-----1.00-------------
.........................................................................................................................................................................................................................CTCCCACTTCTGACCCCA......................................................................................................................................................................................................................................................................184.000.00--------1.00-----------------------1.00-----1.00----1.00-----------
................................................................................................................................................TCCCTCGTGTGTCCCG.................................................................................................................................................................................................................................................................................................................................................162.000.00-------2.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................ATTCTTGATCTCTCCGGGCTCC................................................................................................................................................................2211.001.00--------------1.00----------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCCGGGCTCCCAGG............................................................................................................................................................181.000.00---------------1.00---------------------------------------
..................................................................................................................................................................................................................................................................................TCCTCTGTCCCACTTCTG.............................................................................................................................................................................................................181.000.00------1.00------------------------------------------------
................................................................................................................................................................................................................................................................................................................................TGATCTCTCCGGGCTCCC...............................................................................................................................................................1811.001.00--------------1.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTGGGCGGCCGGGGCG................................................................................201.000.00------------------------------------------------1.00------
........................................................................................................................................................................................................................TCTCCCACTTCTGACACTA......................................................................................................................................................................................................................................................................191.000.00-----------------1.00-------------------------------------
.........................................................................................................................TCCCTGTCCCTGCACCTGCCTGTT................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------------1.00-----------------------------
................................................................................................................................................................................................................................................................................TCTCCTCTGTCCCACGCTC..............................................................................................................................................................................................................191.000.00---------------------------------1.00---------------------
......................................................................................................................................................GTGTGTCCCCCTCTCGTCG........................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------------------------------1.00---
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGTCGGGGTTCTGTCCTCTG.....................................................2311.001.00-------------------1.00-----------------------------------
...........................................................................................................................................................................................................................CCCACTTCTGACCCCTTTTGT.................................................................................................................................................................................................................................................................211.000.00----------------------1.00--------------------------------
........................................................................................................................................................................................................................TCTCCCACTTCTGACCCCA......................................................................................................................................................................................................................................................................191.000.00-----------------------------1.00-------------------------
..........ACCAGAGCAGCGAGACGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------1.00--------------------------------------
........................................................................................................................................................................................................................TCTCCCACTTCTGACACCC......................................................................................................................................................................................................................................................................191.000.00--------------------1.00----------------------------------
.........................................................................................................................................................................................................................CTCCCACTTCTGACCCCT......................................................................................................................................................................................................................................................................1811.001.00---------------1.00---------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCCGGAAGAGCAGA..............................1821.001.00----------------------------1.00--------------------------
..........................................................................................................................................................................................CCTCTCCGCATCTCCC.......................................................................................................................................................................................................................................................................................................1630.670.67-----------------0.33----------------------------------0.33--
....................................................................................................................................................................CTCCATTTCTCCTCATG............................................................................................................................................................................................................................................................................................................................1740.500.50----------------0.50--------------------------------------
..........................................................................................................................................................GTCCCCCTCTCTCCAT.......................................................................................................................................................................................................................................................................................................................................1670.140.14-----------------------------------------------------0.14-
.............................................................................................................................................................................................................................................................................CCCTCTCCTCTGTCCCA...................................................................................................................................................................................................................1780.120.12------------------------------------------------------0.12

Antisense strand
GAACTCTTGCACCAGAGCAGCGAGAGAACCCTGAGCTACGCCAAGGCGCGGTAGGAGCCCCCGCTGCTCACCCGCCCGCTCCTGAAAGGCCCCAAGATCAGAGCCTTGTCCCGGATGCAGGTCCCTGTCCCTGCACCTGCCTGTTCCCTCGTGTGTCCCCCTCTCTCCATTTCTCCTCATGTGTCTCCTCTCCGCATCTCCCATGTCTCTGCCTCCTCTCCCACTTCTGACCCCTTTTCTAACTCCCCCGAAGGGGTCTCCCTCTAGTCCCCTCTCCTCTGTCCCACTTCTCCTCTGGATCTCCTTTTTCCTGCCATTCTTGATCTCTCCGGGCTCCCCAAAGCCTCCCCCACGACCTCCTCCTGCAGGCTCCCCCAACCCCTCCCCTAGCTATCAGCAGGGTGGGCGGCCGGATGTTGCCCTGGGTCGGGGTTCTGTCCTCTGCAGGCAGGAGCCGGAAGAGCAGAGCCTCCAAAAGCTTTATCAAAACCGGGAGA
...........................................................................................................................................................................................................................(((......(((((((((............)))))))))......................................(((((....................)))))....)))....................................................................................................................................................................
...................................................................................................................................................................................................................212..............................................................................................................................341..........................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040015(GSM532900)
G623T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR037931(GSM510469)
293GFP. (cell line)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040039(GSM532924)
G531T. (cervix)
SRR038861(GSM458544)
MM466. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040014(GSM532899)
G623N. (cervix)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................TAGGAGCCCCCGCTGCTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 209.000.00-3.00---2.00--1.00-1.001.00------------1.00------------------------------
...................................................TAGGAGCCCCCGCTGCTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................... 195.000.00--------1.00-1.001.001.00-----------------1.00------------------------
...................................................TAGGAGCCCCCGCTGCGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 203.000.00-3.00-----------------------------------------------------
..................................................................................................................................................................................................................................................................................................TCCTCTGGATCTCCTCAGT............................................................................................................................................................................................ 193.000.00---3.00---------------------------------------------------
...................................................TAGGAGCCCCCGCTGCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................ 183.000.00-----1.00------1.00--------1.00---------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGAGGACAGAACCCCGACC................................................. 2411.001.00--------------------------------------------1.00----------
............................................................AGCGGGCGGGTGAGCAGCGG................................................................................................................................................................................................................................................................................................................................................................................................................................. 2011.001.00-------------------------------------1.00-----------------
.....................................................................................................................................................................................................................................................................................................................................................................TCCTCCTGCAGGCTCCCCAA........................................................................................................................ 201.000.00------1.00------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................CAACCCCTCCCCTAGTT......................................................................................................... 171.000.00---------------------------------------1.00---------------
...................................................................................................................................................................................................................................................................................................CCTCTGGATCTCCTTTGGC........................................................................................................................................................................................... 191.000.00---------------------------------------------1.00---------
................................................................................................................................................................................................................................................................TCTCCCTCTAGTCCCCTTCA............................................................................................................................................................................................................................. 201.000.00-----1.00-------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................CCCAAAGCCTCCCCCTGGT.............................................................................................................................................. 191.000.00--------------------------------------------------1.00----
.....................................................................ACCCGCCCGCTCCTGATTG......................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------1.00---------------------------------------------
....................................................................................................................................................................................................................................................................CCTCTAGTCCCCTCTCCAC.......................................................................................................................................................................................................................... 191.000.00------------------------------------1.00------------------
........................................................................................................................................................................................................................................................................................................................................................................TCCTGCAGGCTCCCCTGT....................................................................................................................... 181.000.00----------------------------------1.00--------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAGCCTCCAAAGTG.................. 181.000.00-------------------------------------------------1.00-----
...........................................................................................................................................................................................................................................................................................................TCTCCTTTTTCCTGCCTCA................................................................................................................................................................................... 191.000.00-----------------------1.00-------------------------------
...................................................TAGGAGCCCCCGCTGCGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-1.00-----------------------------------------------------
...................................................................................................................................................................................................................CCTCCTCTCCCACTTTAGC........................................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------1.00-------
...............................................................................................................................ACACGAGGGAACAGGCAGGTGCAGGGA....................................................................................................................................................................................................................................................................................................................................................... 2711.001.00-------------1.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................GCCTCCCCCACGACCTCCACGC..................................................................................................................................... 221.000.00---------1.00---------------------------------------------
....................................................................CACCCGCCCGCTCCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................ 171.000.00-------1.00-----------------------------------------------
.......................................................................................................................................................................................................................................................................................AAAAAGGAGATCCAGAGGAGAAGTGGGACA............................................................................................................................................................................................ 3011.001.00-------------------------------1.00-----------------------
.............................................................................................................................................................................................................................................................................................................................................................CCACGACCTCCTCCTGTGGA................................................................................................................................ 201.000.00----------------------------------------1.00--------------
.................................................................................................................................................................................................................................................................CTCCCTCTAGTCCCCTGAGA............................................................................................................................................................................................................................ 201.000.00----------------------------------------------1.00--------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGCCGGAAGATCC................................ 181.000.00------------------------------------------1.00------------
..............................................................................................................................................................................................................................................................................................................CCTTTTTCCTGCCATTCTTA............................................................................................................................................................................... 201.000.00-------------1.00-----------------------------------------
...................................................TAGGAGCCCCCGCTGCGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-1.00-----------------------------------------------------
............................................................................................................................................................................ATGGGAGATGCGGAGAGGAGACACATGAGGAG..................................................................................................................................................................................................................................................................................................... 3211.001.00------1.00------------------------------------------------
.........................................................................................................................................................TGTCCCCCTCTCTCCATGAA.................................................................................................................................................................................................................................................................................................................................... 201.000.00--------------------------1.00----------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCAGAGCCTCCGT...................... 171.000.00------------------1.00------------------------------------
................................................................................................................................................................................................................................................................................................................................................TGGGGGAGGCTTTGGG................................................................................................................................................. 1680.120.12------0.12------------------------------------------------