ID: uc001ayc.1_intron_13_0_chr1_16534721_r
GENE: ARHGEF19(2)
chr1:16534671-16535187-


(1)
AGO2.ip 		(2)
BRAIN 		(8)
BREAST 		(4)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(1)
LIVER 		(2)
OTHER 		(20)
SKIN

Sense strand
CACACAGCCACAGCGCCGGGCCAGCCACGGCTCGGAGAAGAAGTCTGCCTGTGAGTCACCCTGGGGAAGGCGGGTGTGGGTGCCATGGCAGGGGGATAGGGGAGGGGCTGGGCAGCTCCTTAACCTTTATGTCCCAAGGTTCCCCCAAAAGTCAGGACAAGTGGTAGATTAGTGATAAGGAAACTAGTGGGGCTCAGGGAAGGCAAGTGACTTGTCCAAGGTTATGCAGTGAGTGAGTCACCATTCTGGGCAGCCTGATCCCTCTGTCTACTGCAGCCAGGCCCTGTGCTCTCCTTACCCCTCTCGTGGACCCCAGGGCTCTGGGGACCAGATGCTAGCAGAAACACAGGCCCTTCCCTTGGGCATGGTGCCTGAACCTCCCCAGGTGCTCAGGGCCAGGGGCAGCAGCAGGGAGGAGGTTGGGGGAGACCCCAGCCCGTGCTCTCACTCCTTGCCCCCAACCCTAGGGCGCAAGATGCGGGTGTACCAGCGTGAAGAGGTCCCCGGCTGCCCCGAG
...............................................................................................................................................................................................................................................................................................................................................................................(((((((........)))))))..((((...((((.....((((((((((((((((((....)))))))).......)).))))))))))))..))))....................................................
...............................................................................................................................................................................................................................................................................................................................................................................368................................................................................................467................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR040009(GSM532894)
G727T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................................................................................................................................................................................................................................................................................CTGAACCTCCCCAGGGCAG...............................................................................................................................1910.000.00--3.00--1.001.00-----1.00---1.00---1.00--1.00----------------1.00--------
...................................................................................................................................................................................................................................................................................................................................................................................CTGAACCTCCCCAGGGCA................................................................................................................................188.000.00--1.00----1.001.00----1.00---1.00-1.00-------1.00---------1.00-----------
...................................................................................................................................................................................................................................................................................................................................................................................CTGAACCTCCCCAGGGC.................................................................................................................................175.000.00------1.001.00--2.00-1.00------------------------------------
.................................................................................................................................................................TGGTAGATTAGTGATTTTG.................................................................................................................................................................................................................................................................................................................................................193.000.00---1.00--------------------1.00-1.00----------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGCGT.........................................................................................192.000.002.00------------------------------------------------
........................CCACGGCTCGGAGAAGAAGTCTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002.00---------2.00---------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGGAA.........................................................................................1921.500.50----1.50--------------------------------------------
.................................................................................................................................................................................................TCAGGGAAGGCAAGTGTTG.................................................................................................................................................................................................................................................................................................................191.000.00-1.00-----------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGGAGGTTGTATA...........................................................................................191.000.00---------------------1.00---------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGGGGT........................................................................................201.000.001.00------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGGAGGTTGTAT............................................................................................181.000.00-----------------------------1.00-------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................GGGGCAGCAGCAGGGAGGAGGT.................................................................................................2211.001.00----------------------------1.00--------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGCGTT........................................................................................201.000.001.00------------------------------------------------
.............................................................TGGGGAAGGCGGGTGTAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---1.00---------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGGGT.........................................................................................191.000.001.00------------------------------------------------
.............................................................TGGGGAAGGCGGGTGCGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------1.00----------------------------------
.................................................................................................................................................................TGGTAGATTAGTGATTCTG.................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00-----------------------------------------------
............................................................CTGGGGAAGGCGGGTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00----------------------------------1.00--------------
........................................................................................................................................................................................TAGTGGGGCTCAGGGAAGGCAAGT.....................................................................................................................................................................................................................................................................................................................2411.001.00-------------------------1.00-----------------------
................................CGGAGAAGAAGTCTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------1.00----------
.............................................................TGGGGAAGGCGGGTGTGTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00------------------1.00------------------------------
............................................................CTGGGGAAGGCGGGTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---------------------------------------1.00---------
................................................................................................................................................................................AAGGAAACTAGTGGGTGCA..................................................................................................................................................................................................................................................................................................................................191.000.00----------------------1.00--------------------------
...................................................................................................................................................................................................................................AGTGAGTGAGTCACCATTCTGGGCAGCC......................................................................................................................................................................................................................................................................2811.001.00--------1.00----------------------------------------
.................................................................GAAGGCGGGTGTGGGTGTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------------------------------1.00------------------
.............................................................TGGGGAAGGCGGGTGTATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---1.00---------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGGAGGTTGTTT............................................................................................181.000.00-------------------------------------------1.00-----
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGCGGT........................................................................................201.000.001.00------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGAAGAGGTCCATAT..........191.000.00-------------------------------1.00-----------------
.............................................................TGGGGAAGGCGGGTGTAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------1.00----------------------------------
..........................ACGGCTCGGAGAAGAAGTCTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-----1.00-------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTGGGGGAGACCCCAGCCCGTGCTCTCACTCC..................................................................3511.001.00---------------1.00---------------------------------
.................................................................................................................................................................TGGTAGATTAGTGATCTTG.................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00---------------------------------------------
..............................................................................................................................................................................................................................................................CTGATCCCTCTGTCTCAGA....................................................................................................................................................................................................................................................191.000.00------------------------------------1.00------------
.............................................................TGGGGAAGGCGGGTGTCTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-1.00-----------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGGCGCAAGATGCCGG...................................181.000.00---------------1.00---------------------------------
...................................AGAAGAAGTCTGCCTGTGAGTCACCCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.001.00------------------------------------------------
.............................GCTCGGAGAAGAAGTCTGCCTGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00-------------1.00-----------------------------------
..............................................................................................................................................................................................................................................................................................................................................CTAGCAGAAACACAGGC......................................................................................................................................................................1720.500.50---------------------------------------------0.50---
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGGAAG........................................................................................2020.500.50----0.50--------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGGA..........................................................................................1820.500.50----0.50--------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGAGGTTGGGGGAAGG.......................................................................................2120.500.50----0.50--------------------------------------------
........................................................................................CAGGGGGATAGGGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................1730.330.33----------------0.33--------------------------------
.....................................AAGAAGTCTGCCTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1640.250.25------------------------------------------------0.25
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGTCCCCGGCTCAAA....1940.250.25----------------------------------------------0.25--
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGGTCCCCGGCT........1540.250.25-----------------------------------------------0.25-
........................................................................................CAGGGGGATAGGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................1590.110.11-----0.11-------------------------------------------

Antisense strand
CACACAGCCACAGCGCCGGGCCAGCCACGGCTCGGAGAAGAAGTCTGCCTGTGAGTCACCCTGGGGAAGGCGGGTGTGGGTGCCATGGCAGGGGGATAGGGGAGGGGCTGGGCAGCTCCTTAACCTTTATGTCCCAAGGTTCCCCCAAAAGTCAGGACAAGTGGTAGATTAGTGATAAGGAAACTAGTGGGGCTCAGGGAAGGCAAGTGACTTGTCCAAGGTTATGCAGTGAGTGAGTCACCATTCTGGGCAGCCTGATCCCTCTGTCTACTGCAGCCAGGCCCTGTGCTCTCCTTACCCCTCTCGTGGACCCCAGGGCTCTGGGGACCAGATGCTAGCAGAAACACAGGCCCTTCCCTTGGGCATGGTGCCTGAACCTCCCCAGGTGCTCAGGGCCAGGGGCAGCAGCAGGGAGGAGGTTGGGGGAGACCCCAGCCCGTGCTCTCACTCCTTGCCCCCAACCCTAGGGCGCAAGATGCGGGTGTACCAGCGTGAAGAGGTCCCCGGCTGCCCCGAG
...............................................................................................................................................................................................................................................................................................................................................................................(((((((........)))))))..((((...((((.....((((((((((((((((((....)))))))).......)).))))))))))))..))))....................................................
...............................................................................................................................................................................................................................................................................................................................................................................368................................................................................................467................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR040009(GSM532894)
G727T. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
................................................................................................................................................................................................................................................................GATCCCTCTGTCTACTAT................................................................................................................................................................................................................................................... 181.000.00--------------------------------1.00----------------
..................................................................................................................................................................................................................................................................................................CTCCTTACCCCTCTCGTT................................................................................................................................................................................................................. 181.000.00---------------------------------1.00---------------
..................................................................................................................................................................................................................................................................................................CTCCTTACCCCTCTCGTCTTC.............................................................................................................................................................................................................. 211.000.00-----------1.00-------------------------------------
.....................................................................GCGGGTGTGGGTGCCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00-----------------------------------1.00-------------
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGGGAGGAGGTG................................................................................................ 191.000.00-----------------------------------------1.00-------
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGGAGGAGAG................................................................................................. 171.000.00-1.00-----------------------------------------------
..........................................................................................................GCTGGGCAGCTCCTTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00--------------------------------------------1.00----
...............................................................................................................................................................................................................................................TCAGGCTGCCCAGAATGGT................................................................................................................................................................................................................................................................... 1911.001.00------------------------------------------1.00------
................................................................................................................................................................................................................................................................................................................................................................................TGCCTGAACCTCCCCAGGGGG................................................................................................................................ 211.000.00-----------1.00-------------------------------------