ID: uc001aya.2
GENE: EPHA2(14)
chr1:16456865-16457114-


(1)
AGO3.ip 		(1)
B-CELL 		(6)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(20)
SKIN 		(1)
UTERUS

Sense strand
GAACTCTGGACACAGACCCTTAGGCATTTGCCCTTTGGGCAGCTCTGAAGGTTGGGTGGCAGCTCAAGAAAGGCCCTTCCTGTCTGTTTCTGGGATGTTCCTGTTCCCCTCCCCTCCCCTGCCCACCTCCATAGGCTGGAGGCTGCAGAGGGTTTCAGTGGCTTTCTGCAACAGCGCCCCTGACCTTCGTGCCCCGCCAGGTGATGAAAGCCATCAATGATGGCTTCCGGCTCCCCACACCCATGGACTG
.......................................................................((((....(((.........((((.........)))).......(((((((...((((((.....))))))..)))).)))...))).)))).......................................................................................
.....................................................................70...........................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189782SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038859(GSM458542)
MM386. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGT...........................................................................................23119.0019.006.002.00-1.002.001.00-------2.00-----1.00------------1.00-1.00------1.00-----1.00--------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGTGT.........................................................................................2518.006.002.00----1.00---1.00--1.00-------------------------1.001.00------1.00---------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGTG..........................................................................................2416.006.00-1.00--1.001.002.00--------1.00----------------------------------------
..........................................................................CCTTCCTGTCTGTTTCTCTCT...........................................................................................................................................................216.000.00----------2.00------1.00--------1.00-1.00---------------------1.00-----
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCA.............................................................................................2115.005.00---1.00----3.00----------------1.00------------------------------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAG............................................................................................2214.004.001.00--------2.00----------------------------------1.00-----------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTC..............................................................................................2014.004.00--3.00--------------------1.00--------------------------------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGTGA.........................................................................................2514.006.001.00--1.00-1.00-----------------------------1.00--------------------
...................................................................................................................................................................................CTGACCTTCGTGCCCCGCCAGT.................................................223.000.00-------1.00---------------------1.00----------------------1.00---
....................................................................................................................................AGGCTGGAGGCTGCAGAGGGT.................................................................................................2113.003.00--3.00-----------------------------------------------------
...................................................................................................................................................................................CTGACCTTCGTGCCCCGCCAGA.................................................223.000.00-------1.00-------------------------1.00--1.00-------------------
..........................................................................................................................................................................................................GATGAAAGCCATCAATGATGG...........................2112.002.00--------------2.00-----------------------------------------
.........................................................................CCCTTCCTGTCTGTTTCTCTCT...........................................................................................................................................................222.000.00----------------------1.00--------------------------1.00------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGTGG.........................................................................................2512.002.00---1.00-1.00--------------------------------------------------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGTGGC........................................................................................2612.002.00----2.00---------------------------------------------------
..................................................................................................................................................................................CCTGACCTTCGTGCCCCGCCAGA.................................................232.000.00-----------1.00--------1.00-----------------------------------
........................................................................................................................................TGGAGGCTGCAGAGGGTTT...............................................................................................1912.002.00------------------------------------------1.00--------1.00----
..................................................................................................................................................................................CCTGACCTTCGTGCCCCGCCAGT.................................................232.000.00----------------1.00-------1.00-------------------------------
.......................................................................................................................................CTGGAGGCTGCAGAGGGTTTCAGT...........................................................................................2411.001.00------1.00-------------------------------------------------
...........................................................................................................................................AGGCTGCAGAGGGTTTCAGTGGC........................................................................................2311.001.00------1.00-------------------------------------------------
..................................................................................................................................................................................CCTGACCTTCGTGCCCCGCCAGTT................................................241.000.00----------------1.00---------------------------------------
..........................................................................................................................................GAGGCTGCAGAGGGTTTCAGT...........................................................................................2111.001.00-1.00------------------------------------------------------
..................................................................................................................................................AGAGGGTTTCAGTGGTGAT.....................................................................................191.000.00---------------------------------------------1.00----------
..........................................................................................................................................GAGGCTGCAGAGGGTTTCAGTGT.........................................................................................231.000.001.00-------------------------------------------------------
.......................................................................................................................................CTGGAGGCTGCAGAGGGGT................................................................................................191.000.00------------------1.00-------------------------------------
............................................CTGAAGGTTGGGTGGCATCTC.........................................................................................................................................................................................211.000.00-------------------------------1.00------------------------
....................................................................................................................................................................................TGACCTTCGTGCCCCGCCAGT.................................................211.000.00-------------------------------------1.00------------------
..................................................................................................................................................................................CCTGACCTTCGTGCCCCGC.....................................................1911.001.00-----------1.00--------------------------------------------
...............................................AAGGTTGGGTGGCAGGCGC........................................................................................................................................................................................191.000.00------------------------------------------------1.00-------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTA..............................................................................................2011.002.00---1.00----------------------------------------------------
.....................................................................................................................................................................................GACCTTCGTGCCCCGCCAGAA................................................211.000.00----------------------------------------1.00---------------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGA...........................................................................................2311.004.00---------------1.00----------------------------------------
.......................................................................................................................................CTGGAGGCTGCAGAGGGTTTCAG............................................................................................2311.001.00-1.00------------------------------------------------------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGTA..........................................................................................2411.0019.00-1.00------------------------------------------------------
.....................................................................................................................................................................................................................TCAATGATGGCTTCCGGCTCCCC..............2311.001.00---------------------1.00----------------------------------
............................................................................................................................................................................................................TGAAAGCCATCAATGATGGGAT........................221.000.00------------1.00-------------------------------------------
........................................................................................................................................TGGAGGCTGCAGAGGGTTTCAGTAA.........................................................................................2511.0019.00-1.00------------------------------------------------------
.........................................................................CCCTTCCTGTCTGTTTCTCT.............................................................................................................................................................201.000.00-----------------1.00--------------------------------------
..........................................................................................................................................................TCAGTGGCTTTCTGCAACAGCGCC........................................................................2411.001.00-------1.00------------------------------------------------
..........................................................................................................................................GAGGCTGCAGAGGGTTTCAGTGG.........................................................................................2311.001.00------------------------------1.00-------------------------
........................................................................................................................................TGGAGGCTGCAGAGGGT.................................................................................................1740.250.25--0.25-----------------------------------------------------
...............................................................................................................CCCTCCCCTGCCCACCTC.........................................................................................................................1850.200.20------------------------------------------------------0.20-
..........................................................................CCTTCCTGTCTGTTTC................................................................................................................................................................1670.140.14-------------------------------------------------------0.14

Antisense strand
GAACTCTGGACACAGACCCTTAGGCATTTGCCCTTTGGGCAGCTCTGAAGGTTGGGTGGCAGCTCAAGAAAGGCCCTTCCTGTCTGTTTCTGGGATGTTCCTGTTCCCCTCCCCTCCCCTGCCCACCTCCATAGGCTGGAGGCTGCAGAGGGTTTCAGTGGCTTTCTGCAACAGCGCCCCTGACCTTCGTGCCCCGCCAGGTGATGAAAGCCATCAATGATGGCTTCCGGCTCCCCACACCCATGGACTG
.......................................................................((((....(((.........((((.........)))).......(((((((...((((((.....))))))..)))).)))...))).)))).......................................................................................
.....................................................................70...........................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR189782SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038859(GSM458542)
MM386. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
......................................................................................................GTTCCCCTCCCCTCCCGGTT................................................................................................................................ 201.000.00---------------------------1.00----------------------------
......................................................................................................GTTCCCCTCCCCTCCCCTTCTG.............................................................................................................................. 221.000.00-------------------------------------------1.00------------
..........................................................................................................TGGGCAGGGGAGGGGAGGG............................................................................................................................. 1950.200.20-----------------------------------------------------0.20--