ID: uc001axk.1_intron_1_0_chr1_16199632_f.5p
GENE: SPEN(2)
chr1:16199582-16199831+


(1)
AGO1.ip 		(8)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(22)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(8)
LIVER 		(1)
OTHER 		(30)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
CCACCGTCACTTCATGCACGAGAAGGACGTTATGAGCGGAGACTTGATGGGTAAGTTCCAAGGTTTCTGTAGGCAGGTATTTTGTATTTGATATGGTGAGAAACAGAAACTCATATTTAGGGGCCCCAGATGGATTTAAAGTTTTGGGCATTCTCAATGTTTCCTATTTTGGGTTGGAAACGGAAGTGATTTATATCCCAATGGCTGGTATCTTATGGAATCGTAGAGGATATTTCCTGCAGCTGATTGG
...................................................(((((.....(((((((((...((.(((((........)))))..))....)))))))))...)))))...((((.((((.........)))).)))).....................................................................................................
..................................................51..................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)
..........................................................CAAGGTTTCTGTAGGTG...............................................................................................................................................................................1717.000.00----------4.001.00---1.00---2.001.00----1.00---------------------1.00--------1.00------1.00--1.001.00------------------1.00-1.00-
.......................................................TTCCAAGGTTTCTGTAGGCAGGT............................................................................................................................................................................2317.007.00------7.00-----------------------------------------------------------------------------------
............................................TGATGGGTAAGTTCCAAGGTTTCTGTAGGCAGGTATTTTGTATTTGATATGGTGAGAAACAGAAA.............................................................................................................................................6516.006.00----6.00-------------------------------------------------------------------------------------
...........................................................AAGGTTTCTGTAGGCAGGTA...........................................................................................................................................................................2014.004.001.00------1.001.00------------------------1.00--------------------------------------------------------
...........................................................AAGGTTTCTGTAGGCAGGT............................................................................................................................................................................1914.004.00--4.00---------------------------------------------------------------------------------------
......................AAGGACGTTATGAGCGGAGA................................................................................................................................................................................................................2013.003.00-------------1.00--------------------1.00----------------------1.00--------------------------------
.........................................................CCAAGGTTTCTGTAGGCAGGT............................................................................................................................................................................2113.003.00----------------------2.00-----------------------------------------1.00-------------------------
..........................................................CAAGGTTTCTGTAGGCAC..............................................................................................................................................................................183.000.00------------3.00-----------------------------------------------------------------------------
...........................................................AAGGTTTCTGTAGGCAGGTAT..........................................................................................................................................................................2113.003.003.00-----------------------------------------------------------------------------------------
............................................................................................................................................................................................ATTTATATCCCAATGGCTGGTATCTT....................................2612.002.00-2.00----------------------------------------------------------------------------------------
.......................AGGACGTTATGAGCGGAGACT..............................................................................................................................................................................................................2112.002.00---------1.00--------------------------1.00-----------------------------------------------------
.....................................................................................................................................ATTTAAAGTTTTGGGCATTCTC...............................................................................................2212.002.00-2.00----------------------------------------------------------------------------------------
......................AAGGACGTTATGAGCGGAGACTT.............................................................................................................................................................................................................2312.002.00---------------------------------------------------------------------------1.00----1.00---------
..........................................................CAAGGTTTCTGTAGGCAGGTAT..........................................................................................................................................................................2212.002.002.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGGAATCGTAGAGGATATTTC..............2112.002.00-------------------------------------2.00----------------------------------------------------
....................AGAAGGACGTTATGAGCGGAGAC...............................................................................................................................................................................................................2312.002.00---------------------------2.00--------------------------------------------------------------
................................TGAGCGGAGACTTGATGGGTAAGTT.................................................................................................................................................................................................2512.002.00--2.00---------------------------------------------------------------------------------------
...............GCACGAGAAGGACGTTATGAGCGGA..................................................................................................................................................................................................................2512.002.00----1.00-------------------------------------------------1.00-----------------------------------
..............................................................GTTTCTGTAGGCAGGTATT.........................................................................................................................................................................1912.002.00--------------------------------------------1.00-------------------------1.00-------------------
................................................GGGTAAGTTCCAAGGTTTCT......................................................................................................................................................................................2012.002.00-----2.00------------------------------------------------------------------------------------
...........................................................AAGGTTTCTGTAGGCAGGTATT.........................................................................................................................................................................2212.002.001.00-------1.00---------------------------------------------------------------------------------
.............................................................................................................................CCAGATGGATTTAAAGTTTT.........................................................................................................2012.002.00------------------2.00-----------------------------------------------------------------------
.......................AGGACGTTATGAGCGGAGACTT.............................................................................................................................................................................................................2212.002.00-------------------------------------------------------------1.00---------1.00------------------
..............................................................GTTTCTGTAGGCAGGTAT..........................................................................................................................................................................1812.002.00-----------------------------2.00------------------------------------------------------------
......................AAGGACGTTATGAGCGGAGACTTG............................................................................................................................................................................................................2412.002.00-----------1.00----------------------------------------1.00-------------------------------------
..............................TATGAGCGGAGACTTGATGGGGCTT...................................................................................................................................................................................................252.000.00---2.00--------------------------------------------------------------------------------------
......................AAGGACGTTATGAGCGGAG.................................................................................................................................................................................................................1912.002.00-----------------------------------------------------------------1.00-----------------1.00------
...................GAGAAGGACGTTATGAGCGGAG.................................................................................................................................................................................................................2212.002.00--------------------------2.00---------------------------------------------------------------
.......................AGGACGTTATGAGCGGAGAC...............................................................................................................................................................................................................2012.002.00------------------------------------------------1.00------1.00----------------------------------
................CACGAGAAGGACGTTATGAGCGGA..................................................................................................................................................................................................................2412.002.00------------------------2.00-----------------------------------------------------------------
.....................GAAGGACGTTATGAGCGGA..................................................................................................................................................................................................................1912.002.00------------------------------2.00-----------------------------------------------------------
..........................................................CAAGGTTTCTGTAGGTGAA.............................................................................................................................................................................192.000.00-----------1.00---------------------------------------1.00--------------------------------------
................................TGAGCGGAGACTTGATGGGGCTC...................................................................................................................................................................................................231.000.00---1.00--------------------------------------------------------------------------------------
....................................................AAGTTCCAAGGTTTCTGTAGGC................................................................................................................................................................................2211.001.00----------------------------------------1.00-------------------------------------------------
.....................................................................................................................................................................................................CCAATGGCTGGTATCTTATG.................................2011.001.00-----------------------1.00------------------------------------------------------------------
.........................................................CCAAGGTTTCTGTAGGCAGGTT...........................................................................................................................................................................2211.003.00-----------------------------------------------------------------------------1.00------------
............CATGCACGAGAAGGACGTTATG........................................................................................................................................................................................................................2211.001.00------------------------------------1.00-----------------------------------------------------
..................................................................................................................................TGGATTTAAAGTTTTGGGC.....................................................................................................1911.001.00--------------------------------------------------------------------1.00---------------------
......................AAGGACGTTATGAGCGGAGT................................................................................................................................................................................................................2011.002.00---------------------------------------------1.00--------------------------------------------
.....................................................................................................................................ATTTAAAGTTTTGGGCATTCTCA..............................................................................................2311.001.00----------------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................CTTATGGAATCGTAGAGGATAT.................2211.001.00-------------------------------1.00----------------------------------------------------------
.......................AGGACGTTATGAGCGG...................................................................................................................................................................................................................1611.001.00------------------------------------------------------------------------1.00-----------------
.................................................................................................GAGAAACAGAAACTCATATTTAGGGGC..............................................................................................................................2711.001.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................................................................................TTATGGAATCGTAGAGGATATTTCCT............2611.001.00----------------------------------------------1.00-------------------------------------------
...................GAGAAGGACGTTATGAGCGGAGA................................................................................................................................................................................................................2311.001.00-----------------------------------------1.00------------------------------------------------
....................AGAAGGACGTTATGAGCGGAGACTTGATG.........................................................................................................................................................................................................2911.001.00-----1.00------------------------------------------------------------------------------------
............CATGCACGAGAAGGACGTT...........................................................................................................................................................................................................................1911.001.00----------------------------1.00-------------------------------------------------------------
...................................................................................................................TTTAGGGGCCCCAGATGGA....................................................................................................................1911.001.00--1.00---------------------------------------------------------------------------------------
......................AAGGACGTTATGAGCGGAGACTTGATGG........................................................................................................................................................................................................2811.001.00------------------------------------------1.00-----------------------------------------------
.......................AGGACGTTATGAGCGGAGACTTGATGGGGC.....................................................................................................................................................................................................301.000.00-------1.00----------------------------------------------------------------------------------
..................................................................................................................................................................................................................TCTTATGGAATCGTAGAGG.....................1911.001.00-----------------1.00------------------------------------------------------------------------
......................................................................................................................................................................................................................ATGGAATCGTAGAGGATATTTCCTGCAGCTGAT...3311.001.00-------1.00----------------------------------------------------------------------------------
.............ATGCACGAGAAGGACGTTATGAGCGGAGACC..............................................................................................................................................................................................................311.000.00---1.00--------------------------------------------------------------------------------------
..............................................................GTTTCTGTAGGCAGGTATA.........................................................................................................................................................................1911.002.001.00-----------------------------------------------------------------------------------------
..................CGAGAAGGACGTTATGAGCGGAGAC...............................................................................................................................................................................................................2511.001.00----------------------------------1.00-------------------------------------------------------
.................................................................TCTGTAGGCAGGTATTTTGTA....................................................................................................................................................................2111.001.001.00-----------------------------------------------------------------------------------------
....................................CGGAGACTTGATGGGGCT....................................................................................................................................................................................................181.000.00--------------------------------------------------------------------------1.00---------------
.................................................................................................................................................................TCCTATTTTGGGTTGTGAA......................................................................191.000.00-----------------------------------------------------------1.00------------------------------
.........................................................................................................................................................................TGGGTTGGAAACGGAAATTT.............................................................201.000.00----------------------------------------------------------------------------------1.00-------
........................................................TCCAAGGTTTCTGTAGGCAGGTA...........................................................................................................................................................................2311.001.00---------------------------------------------------------------------1.00--------------------
..........................................................CAAGGTTTCTGTAGGCAGGTATTTTG......................................................................................................................................................................2611.001.00-----1.00------------------------------------------------------------------------------------
...........TCATGCACGAGAAGGACGTTA..........................................................................................................................................................................................................................2111.001.00---------1.00--------------------------------------------------------------------------------
.....................................................................................................................................ATTTAAAGTTTTGGGCATTCTCAA.............................................................................................2411.001.00-1.00----------------------------------------------------------------------------------------
.....................................................................................................................................................................ATTTTGGGTTGGAAACGG...................................................................1811.001.00-----1.00------------------------------------------------------------------------------------
........................................................TCCAAGGTTTCTGTAGGCAGGTAT..........................................................................................................................................................................2411.001.00---------------------------------------------------------------------------------1.00--------
..............TGCACGAGAAGGACGTTATG........................................................................................................................................................................................................................2011.001.00--------------------------------------------------------------1.00---------------------------
.....................................................................................................................................................................................................CCAATGGCTGGTATCTTATGGAATC............................2511.001.00--------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................ATGGAATCGTAGAGGATATTTCCTGCAGC.......2911.001.00-----------------------1.00------------------------------------------------------------------
.....................GAAGGACGTTATGAGCGGAGACTT.............................................................................................................................................................................................................2411.001.00-------------1.00----------------------------------------------------------------------------
..........................................................CAAGGTTTCTGTAGGTGA..............................................................................................................................................................................181.000.00------------------------------------------------------------------------------------1.00-----
.........................................................................................................................................................................................GTGATTTATATCCCAATGGCTGGGAT.......................................261.000.00-------------------------------------------------------------------------------1.00----------
...............................ATGAGCGGAGACTTGATGGCAGC....................................................................................................................................................................................................231.000.00---------------------1.00--------------------------------------------------------------------
.............................................GATGGGTAAGTTCCAAGGTTTCTGTAGGCAGGTA...........................................................................................................................................................................3411.001.00-----------------------------------1.00------------------------------------------------------
....................AGAAGGACGTTATGAGCGGAGA................................................................................................................................................................................................................2211.001.001.00-----------------------------------------------------------------------------------------
...........................................................AAGGTTTCTGTAGGCAGGTATA.........................................................................................................................................................................2211.003.001.00-----------------------------------------------------------------------------------------
.................ACGAGAAGGACGTTATGAGCGGAGACTTGA...........................................................................................................................................................................................................3011.001.00-------------------------------------------------------------------------------------1.00----
..................CGAGAAGGACGTTATGAGCGGAGACT..............................................................................................................................................................................................................2611.001.00-----------------------------------------------------1.00------------------------------------
............CATGCACGAGAAGGACGTTATGAGCGGAGACT..............................................................................................................................................................................................................3211.001.00-------1.00----------------------------------------------------------------------------------
...........TCATGCACGAGAAGGACGCTAT.........................................................................................................................................................................................................................221.000.00-------------------------------------------------1.00----------------------------------------
..........TTCATGCACGAGAAGGACGTTATGAGCGGAGAC...............................................................................................................................................................................................................3311.001.00---1.00--------------------------------------------------------------------------------------
.......................AGGACGTTATGAGCGGA..................................................................................................................................................................................................................1711.001.00-------------------------------1.00----------------------------------------------------------
............................................................................................................................................................................................ATTTATATCCCAATGGCTG...........................................1911.001.00-1.00----------------------------------------------------------------------------------------
...........................................................AAGGTTTCTGTAGGCAGGTATTTT.......................................................................................................................................................................2411.001.00--------1.00---------------------------------------------------------------------------------
............................................................AGGTTTCTGTAGGCAGGT............................................................................................................................................................................1811.001.00---------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................................ATCCCAATGGCTGGTATCTTATGGAATA............................281.000.00-----1.00------------------------------------------------------------------------------------
..........................................................................................................................................................................................TGATTTATATCCCAATGGCTGGCAT.......................................251.000.00-------------------------------------------------------------------------1.00----------------
..............TGCACGAGAAGGACGTTATGAGCGGAGACTTTT...........................................................................................................................................................................................................3311.001.00--1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................CCCAATGGCTGGTATCTTATG.................................2111.001.00--------------------------------------------------1.00---------------------------------------
..............................................................GTTTCTGTAGGCAGGTATG.........................................................................................................................................................................1911.002.00----------------------------1.00-------------------------------------------------------------
...........................................................AAGGTTTCTGTAGGCAGGTATTTTGTA....................................................................................................................................................................2711.001.001.00-----------------------------------------------------------------------------------------
..................CGAGAAGGACGTTATGAGCGGAG.................................................................................................................................................................................................................2311.001.00--------1.00---------------------------------------------------------------------------------
.........................GACGTTATGAGCGGAGAC...............................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------1.00-------------
...........................................................AAGGTTTCTGTAGGCAGG.............................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------1.00--
.....................................................................................................................................................................ATTTTGGGTTGGAAACGGAAGTG..............................................................2311.001.00--------------1.00---------------------------------------------------------------------------
...............GCACGAGAAGGACGTTATGAGCGG...................................................................................................................................................................................................................2411.001.00--------1.00---------------------------------------------------------------------------------
......................AAGGACGTTATGAGCGGAGACTTGATGGGCAAG...................................................................................................................................................................................................331.000.00---------------------1.00--------------------------------------------------------------------
....................AGAAGGACGTTATGAGCGGGGAC...............................................................................................................................................................................................................231.000.00---------------------------------1.00--------------------------------------------------------
...............................................................TTTCTGTAGGCAGGTAT..........................................................................................................................................................................1711.001.00----------------------------------------------------------1.00-------------------------------
.................................GAGCGGAGACTTGATGGGT......................................................................................................................................................................................................1911.001.00--------------1.00---------------------------------------------------------------------------
..............TGCACGAGAAGGACGTTATGAGCGGAGACTT.............................................................................................................................................................................................................3111.001.00-----------------------------------1.00------------------------------------------------------
...........................................................AAGGTTTCTGTAGGCAGGTATTTTG......................................................................................................................................................................2511.001.00--------------1.00---------------------------------------------------------------------------
.......................AGGACGTTATGAGCGGAGACTCG............................................................................................................................................................................................................2311.002.00---1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................ATTTTGGGTTGGAAACGGAAGTGATT...........................................................2611.001.00---------1.00--------------------------------------------------------------------------------
......................................................................................................................................................................................................................ATGGAATCGTAGAGGATA..................1811.001.00--------------------------------------1.00---------------------------------------------------
................................TGAGCGGAGACTTGATGGGTAAGTTCC...............................................................................................................................................................................................2711.001.00---1.00--------------------------------------------------------------------------------------
.........................................................................................................................................................................TGGGTTGGAAACGGAAGTGATT...........................................................2211.001.00-----1.00------------------------------------------------------------------------------------
.........................................................................................................................................................................TGGGTTGGAAACGGAAGTGAT............................................................2111.001.00-------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................ATATTTCCTGCAGCTGATTG.2011.001.00-1.00----------------------------------------------------------------------------------------
............................GTTATGAGCGGAGACTTGATGG........................................................................................................................................................................................................2211.001.00-------------------------1.00----------------------------------------------------------------
...............................................................................TTTTGTATTTGATATGGTGAGAAACAGAA..............................................................................................................................................2911.001.00---------------------------------------1.00--------------------------------------------------
.................................................................................................................................ATGGATTTAAAGTTTTGGGCATTCTCAA.............................................................................................2811.001.00-1.00----------------------------------------------------------------------------------------
....................................................................................................................................................................TATTTTGGGTTGGAAACGGAAGTGAT............................................................2611.001.00-----------------1.00------------------------------------------------------------------------
....................AGAAGGACGTTATGAGCGGAG.................................................................................................................................................................................................................2111.001.00------------------------------------------------------------1.00-----------------------------
.................ACGAGAAGGACGTTAGA........................................................................................................................................................................................................................171.000.00--------------------------------1.00---------------------------------------------------------
.....................................................................................................................................ATTTAAAGTTTTGGGCATTCTCAATG...........................................................................................2611.001.00-1.00----------------------------------------------------------------------------------------
.........................GACGTTATGAGCGGAGACTTGATGGGTA.....................................................................................................................................................................................................2811.001.00---------1.00--------------------------------------------------------------------------------
............................................................................................................................................................................................ATTTATATCCCAATGGCTGGCA........................................221.000.00----------------1.00-------------------------------------------------------------------------
......................................................................................................................................................................TTTTGGGTTGGAAACGGAAGTGATTTATATC.....................................................3111.001.00--------------------------------1.00---------------------------------------------------------
.......................AGGACGTTATGAGCGGAGACTTGATGG........................................................................................................................................................................................................2711.001.00-------1.00----------------------------------------------------------------------------------
..................................AGCGGAGACTTGATGGGTTTA...................................................................................................................................................................................................211.000.00------------------------------------------------------------------------------1.00-----------
......................AAGGACGTTATGAGCGGAGACT..............................................................................................................................................................................................................2211.001.00-------------------------------------------1.00----------------------------------------------
...........................................................AAGGTTTCTGTAGGC................................................................................................................................................................................1520.500.50--------------------------------------0.50---------------------------------------------------
...........................................................AAGGTTTCTGTAGGCGACC............................................................................................................................................................................1920.500.50-----------------------------------------------------------------------------------------0.50
..............................................................GTTTCTGTAGGCAGG.............................................................................................................................................................................1570.140.14---------------------------------------0.14--------------------------------------------------

Antisense strand
CCACCGTCACTTCATGCACGAGAAGGACGTTATGAGCGGAGACTTGATGGGTAAGTTCCAAGGTTTCTGTAGGCAGGTATTTTGTATTTGATATGGTGAGAAACAGAAACTCATATTTAGGGGCCCCAGATGGATTTAAAGTTTTGGGCATTCTCAATGTTTCCTATTTTGGGTTGGAAACGGAAGTGATTTATATCCCAATGGCTGGTATCTTATGGAATCGTAGAGGATATTTCCTGCAGCTGATTGG
...................................................(((((.....(((((((((...((.(((((........)))))..))....)))))))))...)))))...((((.((((.........)))).)))).....................................................................................................
..................................................51..................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)