ID: uc001aty.1_intron_9_0_chr1_12389976_f.5p
GENE: VPS13D(10)
chr1:12389926-12390175+


(3)
B-CELL
(2)
BRAIN
(5)
BREAST
(8)
CELL-LINE
(2)
HEART
(4)
LIVER
(4)
OTHER
(3)
SKIN
(4)
UTERUS
(1)
XRN.ip

Sense strand
CTATGCCCACTTCACCCTTTCTGGAGATTATTATAACCGTGCTCTTTCAGGTCAGTATAAAGCATATGTTATCATGGGATTTAAAAAATAAATTTAAATGTTTGCCTGGACCTATTGCTACGTAAATTTTACATGAAGGAAAGGGCAGGGGTGGGGTGGGACGGGGAAAGATGAAAAGCAAGTAGACTGCATAAACACAGAAAATAAGGATTTTCTGTTGTGCTAAAAACATATCTGATATGTTGCAACT
.................................................................................................((.(((.((((..((..(((((..((...((((........))))..))...)))))...))..)))).))).))..............................................................................
.............................................................................................94............................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343337SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR343336SRR189782SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
TAX577746(Rovira)
total RNA. (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................................................................................GAAAGATGAAAAGCACTTT..................................................................1931.000.0010.009.00-2.00--1.002.002.002.00----------1.00------1.00-----1.00-
.....................................................................................................................................................................GAAAGATGAAAAGCACT....................................................................1719.000.008.00-5.00--4.00-2.00---------------------------
...................................................................................................................................................................GGGAAAGATGAAAAGCACTTT..................................................................219.000.005.00---3.00-1.00----------------------------
....................................................................................................................................................................GGAAAGATGAAAAGCACT....................................................................188.000.002.00-3.003.00-------------------------------
....................................................................................................................................................................GGAAAGATGAAAAGCACTTT..................................................................206.000.002.00---------2.00-2.00----------------------
...................................................................................................................................................................GGGAAAGATGAAAAGCACT....................................................................195.000.004.00----------------1.00-----------------
...................................................................................................................................................................GGGAAAGATGAAAAGCAC.....................................................................184.000.002.00--------1.00---------------1.00---------
.......................................................................................................................................................................AAGATGAAAAGCAAGTAGACTG.............................................................2212.002.00-------------2.00---------------------
..................................................................................................TGTTTGCCTGGACCTGG.......................................................................................................................................172.000.00---------------2.00-------------------
...........................................................................................................................................................GTGGGACGGGGAAAGCCT.............................................................................181.000.00-----------1.00-----------------------
.....................................................................................................................................................................GAAAGATGAAAAGCACTT...................................................................181.000.001.00----------------------------------
........ACTTCACCCTTTCTGGAGA...............................................................................................................................................................................................................................1911.001.00-------------------1.00---------------
......................................................................................................................................................................................TAGACTGCATAAACAAAAA.................................................191.000.00--------1.00--------------------------
....................................................................................................................................................................GGAAAGATGAAAAGCAAATC..................................................................201.000.00--------------------------1.00--------
.......................GAGATTATTATAACCGTGC................................................................................................................................................................................................................1911.001.00------------------1.00----------------
....................CTGGAGATTATTATAACCGTGC................................................................................................................................................................................................................2211.001.00----------------1.00------------------
.................................TAACCGTGCTCTTTCAG........................................................................................................................................................................................................1711.001.00------------------------1.00----------
...................................................................................................................................................................GGGAAAGATGAAAAGCACTT...................................................................201.000.00------1.00----------------------------
....................................................................................................TTTGCCTGGACCTATTGCTAC.................................................................................................................................2111.001.00----------1.00------------------------
.....................................................................................AAATAAATTTAAATGGAAG..................................................................................................................................................191.000.00-----------1.00-----------------------
................................................................................................................................................................................AGCAAGTAGACTGCATAA........................................................1811.001.00----------------------1.00------------
...................................................................................................................................................................GGGAAAGATGAAAAGCACTTC..................................................................211.000.001.00----------------------------------
.........CTTCACCCTTTCTGGAGATT.............................................................................................................................................................................................................................2011.001.00-----------------------1.00-----------
.....................................................................................................................................................................GAAAGATGAAAAGCAATTTG.................................................................201.000.00------------------------------1.00----
...................................................................................................................................................................GGGAAAGATGAAAAGCACG....................................................................191.000.00------1.00----------------------------
...................................................................................................................................................................GGGAAAGATGAAAAGCCCT....................................................................191.000.001.00----------------------------------
...................................................................................................................................................................GGGAAAGATGAAAAGCCTTT...................................................................201.000.00----1.00------------------------------

Antisense strand
CTATGCCCACTTCACCCTTTCTGGAGATTATTATAACCGTGCTCTTTCAGGTCAGTATAAAGCATATGTTATCATGGGATTTAAAAAATAAATTTAAATGTTTGCCTGGACCTATTGCTACGTAAATTTTACATGAAGGAAAGGGCAGGGGTGGGGTGGGACGGGGAAAGATGAAAAGCAAGTAGACTGCATAAACACAGAAAATAAGGATTTTCTGTTGTGCTAAAAACATATCTGATATGTTGCAACT
.................................................................................................((.(((.((((..((..(((((..((...((((........))))..))...)))))...))..)))).))).))..............................................................................
.............................................................................................94............................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343337SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR343336SRR189782SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
TAX577746(Rovira)
total RNA. (breast)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................................................................................GATTTTCTGTTGTGCTAGGTT..................... 212.000.00---------------------1.00----------1.00--
....................................................................................................................................ATGAAGGAAAGGGCAGGGAGT................................................................................................. 211.000.00-----------1.00-----------------------
..............................................................................ATTTAAAAAATAAATTTATTTG...................................................................................................................................................... 221.000.00----------------------------------1.00
...............................................................................................................................................................................................................GGATTTTCTGTTGTGCTAATT...................... 211.000.00--------------1.00--------------------
................................................................................................................................................................................................................GATTTTCTGTTGTGCTAGGTG..................... 211.000.00--------------1.00--------------------
.................................................................................................................................................................................................AACACAGAAAATAAGGAATG..................................... 201.000.00-------------------------------1.00---
..................................................................................................................................................................................................................TTTTCTGTTGTGCTAACGG..................... 191.000.00-----------------------------1.00-----
................................................................................................................................................................................................................GATTTTCTGTTGTGCTAGTTG..................... 211.000.00----------------------------1.00------