ID: uc001atb.1_intron_4_0_chr1_11854596_r
GENE: MTHFR(6)
chr1:11854546-11854835-


(1)
AGO2.ip 		(4)
B-CELL 		(12)
BREAST 		(6)
CELL-LINE 		(7)
CERVIX 		(3)
HEART 		(6)
LIVER 		(1)
OTHER 		(33)
SKIN

Sense strand
AGTTACATCTACCGTACCCAGGAGTGGGACGAGTTCCCTAACGGCCGCTGGTGAGGGCCTGCAGACCTTCCTTGCAAATACATCTTTGTTCTTGGGAGCGGGAGGGCAGAAGAAGTTTGCATGCTTGTGGTTGACCTGGGAGGAGTCAGGGGCAGAATTTACAGGAATGGCCTCCTGGGCATGTGGTGGCACTGCCCTCTGTCAGGAGTGTGCCCTGACCTCTGGGCACCCCTCTGCCAGGGGCAATTCCTCTTCCCCTGCCTTTGGGGAGCTGAAGGACTACTACCTCT
.......................................................................................((((....)))).(((((((((.......((((((((.(((..(((((((....)).)))))..))).......(((((......))))).)))))))).....)))))))))....((((.((((((........))))))..)))).......................................................
................................................................................81.............................................................................................................................................................240................................................
SizePerfect hitTotal NormPerfect NormSRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR040014(GSM532899)
G623N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM532885(GSM532885)
G850N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577590(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532888(GSM532888)
G761T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.....................................................................................TTGTTCTTGGGAGCGGGC...........................................................................................................................................................................................1818.003.00--2.00---2.00--1.001.00---------------------------1.00-------------------1.00----------------
...........................................................................................TTGGGAGCGGGAGGGCGG.....................................................................................................................................................................................188.000.001.001.00------------2.00-----1.00-1.00-------1.00----1.00---------------------------------------
...........................................................................................TTGGGAGCGGGAGGGCGGT....................................................................................................................................................................................195.000.001.002.00-------------------------------------------------1.00----1.00------------------
......................................................................................TGTTCTTGGGAGCGGGC...........................................................................................................................................................................................175.000.00------------1.001.00----------1.00----1.00----1.00----------------------------------------
.....................................................................................TTGTTCTTGGGAGCGG.............................................................................................................................................................................................1614.004.00--1.00--------------1.00-----1.00----1.00----------------------------------------------
.........................................................................................TCTTGGGAGCGGGAGGGC.......................................................................................................................................................................................1813.003.00---1.00-1.00----------------------------------------------1.00----------------------
................CCCAGGAGTGGGACGAGTTCC.............................................................................................................................................................................................................................................................2113.003.00----3.00----------------------------------------------------------------------
.....................................................................................TTGTTCTTGGGAGCGGG............................................................................................................................................................................................1713.003.00------------------1.00--------------------------1.00--------1.00--------------------
...........................................................................................TTGGGAGCGGGAGGGCG......................................................................................................................................................................................173.000.00---1.00---------------------------------1.00--------1.00----------------------------
..........................................................................................CTTGGGAGCGGGAGGGCGGT....................................................................................................................................................................................2022.000.50----------------------------------------1.00------------------1.00---------------
......................................................................................................................................................................................................................................................................TTTGGGGAGCTGAAGGACTAC.......2112.002.00-------2.00-------------------------------------------------------------------
......................................................................................TGTTCTTGGGAGCGGGCGG.........................................................................................................................................................................................192.000.00--1.00-----------------------1.00------------------------------------------------
.....................................................................................TTGTTCTTGGGAGCG..............................................................................................................................................................................................1512.002.00----------1.00--1.00-------------------------------------------------------------
..........................................................................................CTTGGGAGCGGGAGGGCGG.....................................................................................................................................................................................1922.000.501.00--------------------------------1.00-----------------------------------------
.........................................................................................TCTTGGGAGCGGGAGGGCG......................................................................................................................................................................................1912.003.00---1.00-1.00---------------------------------------------------------------------
.........................................................................................TCTTGGGAGCGGGAGGGCGG.....................................................................................................................................................................................2012.003.00---1.00-----------------1.00-----------------------------------------------------
............................................................................................................................................................................................................................................................................GAGCTGAAGGACTACTACCTCT2212.002.00--------2.00------------------------------------------------------------------
..........................................................................................CTTGGGAGCGGGAGGGCGGTC...................................................................................................................................................................................2122.000.501.00------------------1.00-------------------------------------------------------
......................................................................................TGTTCTTGGGAGCGGGCG..........................................................................................................................................................................................181.000.00---------1.00-----------------------------------------------------------------
......................AGTGGGACGAGTTCCCTAACGGCCGCTG................................................................................................................................................................................................................................................2811.001.00--------------------------------------------1.00------------------------------
.....................................................................................TTGTTCTTGGGAGCGGGCGGG........................................................................................................................................................................................2111.003.00------------------------------------------------1.00--------------------------
......................................................................................................AGGGCAGAAGAAGTTGAA..........................................................................................................................................................................181.000.00-----------1.00---------------------------------------------------------------
.........................................................................................TCTTGGGAGCGGGAGGGCGGT....................................................................................................................................................................................2111.003.00-----------------------------------------------------1.00---------------------
.........................................................................................................................................................................................................................ACCTCTGGGCACCCCTCTGCCAG..................................................2311.001.00-----------------------------------------1.00---------------------------------
.....................................................................................................................................................................................................................................................................CTTTGGGGAGCTGAAGGAC..........1911.001.00---------------------------------------1.00-----------------------------------
...........................................................................................TTGGGAGCGGGAGGGCGGG....................................................................................................................................................................................191.000.00---------------------------1.00-----------------------------------------------
......................................................................................TGTTCTTGGGAGCGGGCGGG........................................................................................................................................................................................201.000.00-------------------------------------------------------1.00-------------------
............................................................................................................................................................................................................................................................TTCCCCTGCCTTTGGGGAGCTGAAGGACTA........3011.001.00------------------------------------1.00--------------------------------------
...........................................................................................TTGGGAGCGGGAGGGTGG.....................................................................................................................................................................................181.000.00---------------1.00-----------------------------------------------------------
.....................................................................................TTGTTCTTGGGAGCGGTC...........................................................................................................................................................................................1811.004.00----------------1.00----------------------------------------------------------
.....................................................................................TTGTTCTTGGGAGCGGGCG..........................................................................................................................................................................................1911.003.00------------1.00--------------------------------------------------------------
...........................................................................................TTGGGAGCGGGAGGGCGTT....................................................................................................................................................................................191.000.00-1.00-------------------------------------------------------------------------
...........................................................................................TTGGGAGCGGGAGGGCT......................................................................................................................................................................................171.000.00-----------------------------------------------1.00---------------------------
..........................................................................................................................................................................................................................................................TCTTCCCCTGCCTTTGGGGAGCTGAAGGACT.........3111.001.00-----------1.00---------------------------------------------------------------
.....................................................................................................................................................................................................................................................ATTCCTCTTCCCCTGTAAA..........................191.000.00-------------------------------------------------1.00-------------------------
.........................................................................................TCTTGGGAGCGGGAGGGCAGAAGAAGTTTGC..........................................................................................................................................................................3111.001.00--------------------------------1.00------------------------------------------
................................................................................................AGCGGGAGGGCAGAACCA................................................................................................................................................................................181.000.00----1.00----------------------------------------------------------------------
.......................................................................................GTTCTTGGGAGCGGGCGGG........................................................................................................................................................................................1940.750.50--------------------------------------------------------------0.250.250.25----------
............................................................................................TGGGAGCGGGAGGGCGGT....................................................................................................................................................................................1890.670.330.11------------------0.11-0.11-----------------------------------------------0.11--0.110.11-
.....................................................................................................................................................................................................TCTGTCAGGAGTGTGCC............................................................................1730.670.67-------0.33--------0.33----------------------------------------------------------
............................................................................................TGGGAGCGGGAGGGCGG.....................................................................................................................................................................................1790.560.33------------------0.11-0.11---------------------------------------0.22----------0.11---
.......................................................................................GTTCTTGGGAGCGGG............................................................................................................................................................................................1540.500.50-----------------0.25-----------------------------------------------0.25---------
..........................................................................................CTTGGGAGCGGGAGGGC.......................................................................................................................................................................................1720.500.50---------------0.50-----------------------------------------------------------
.........................................................................................TCTTGGGAGCGGGAGGG........................................................................................................................................................................................1720.500.50-----0.50---------------------------------------------------------------------
............................................................................................TGGGAGCGGGAGGGC.......................................................................................................................................................................................1590.330.33------------------------------------------------------------0.11------0.110.11------
.................................................................................................................................................................................................................................................................CTGCCTTTGGGGAGCTG................1730.330.33-------------------------------------------------------------0.33-------------
.......................................................................................GTTCTTGGGAGCGGGCGG.........................................................................................................................................................................................1840.250.50------0.25--------------------------------------------------------------------
..........................................................................................CTTGGGAGCGGGAGGCGGG.....................................................................................................................................................................................1950.200.20------------------------------------------------------------------0.20--------
..........................................................................................CTTGGGAGCGGGAGG.........................................................................................................................................................................................1550.200.20------0.20--------------------------------------------------------------------
......................................................................................................................................................................................................................................................................TTTGGGGAGCTGAAGG............1690.110.11----------------------------------------------------------------------0.11----
............................................................................................TGGGAGCGGGAGGGCGGTC...................................................................................................................................................................................1990.110.33--------------------------------------------------------------------------0.11

Antisense strand
AGTTACATCTACCGTACCCAGGAGTGGGACGAGTTCCCTAACGGCCGCTGGTGAGGGCCTGCAGACCTTCCTTGCAAATACATCTTTGTTCTTGGGAGCGGGAGGGCAGAAGAAGTTTGCATGCTTGTGGTTGACCTGGGAGGAGTCAGGGGCAGAATTTACAGGAATGGCCTCCTGGGCATGTGGTGGCACTGCCCTCTGTCAGGAGTGTGCCCTGACCTCTGGGCACCCCTCTGCCAGGGGCAATTCCTCTTCCCCTGCCTTTGGGGAGCTGAAGGACTACTACCTCT
.......................................................................................((((....)))).(((((((((.......((((((((.(((..(((((((....)).)))))..))).......(((((......))))).)))))))).....)))))))))....((((.((((((........))))))..)))).......................................................
................................................................................81.............................................................................................................................................................240................................................
SizePerfect hitTotal NormPerfect NormSRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR040014(GSM532899)
G623N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		GSM532885(GSM532885)
G850N. (cervix)		TAX577738(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577590(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532888(GSM532888)
G761T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.........................................................TTGCAAGGAAGGTCTGCAGG..................................................................................................................................................................................................................... 2011.001.00--------------------------------------------------1.00------------------------
.....................................................................................................GAGGGCAGAAGAAGTTATG.......................................................................................................................................................................... 191.000.00-------------------------1.00-------------------------------------------------
......................................................................................................................................................................................................................................................TTCCTCTTCCCCTGCGAC.......................... 181.000.00---------------------------------------------------------1.00-----------------
............................................................................................................................................................................TCCTGGGCATGTGGTACT.................................................................................................... 181.000.00------------------------------------------1.00--------------------------------
.............................................................................ATACATCTTTGTTCTTATA.................................................................................................................................................................................................. 191.000.00-------------------------------1.00-------------------------------------------
....................................................................................................................................................................................................................................................AATTCCTCTTCCCCTGCTT........................... 191.000.00-------------------------------------------1.00-------------------------------