ID: uc001arn.2_intron_5_0_chr1_10683179_f.3p
GENE: (6)
chr1:10684197-10684446+


(1)
AGO1.ip OTHER.mut 		(3)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(5)
BRAIN 		(7)
BREAST 		(22)
CELL-LINE 		(1)
HEART 		(4)
HELA 		(3)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
TESTES 		(2)
UTERUS

Sense strand
AGTAGAAATACTAGAGGTTAGATACAGTGCAGGCAGATCACCCAGAGTGCAGATAAATTAGATGGATTGCGGGGGCTGGGGGTGTCTGCAGATAAATTAGATGGAGCGGGAACACGGGCAGCTCCGAGGTGTGCGGACCGAGCGAGGGGAACGTCTGTGCCTGTGAATTTGCCAGCGCCGTGACTGCTTTCTCCTCGCAGTGACTCAGTTACAGACGACCCTCGCCTCCGTCCAGGAGCTGCTGATTCAG
...............................................................((.((((((((((((...((((((((................))))..))))...)))))))......))))).))..((((((((((.(((.((((..((......))..))))...)))....))))))))))....................................................
..............................................................63.......................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCG.....................................................2219.009.00-2.00---2.00-1.00-1.00-2.00--------1.00-------------------------------------------
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCGCAGT.................................................2618.008.005.00-----------1.00-----------------------------------------1.00----1.00----
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCGC....................................................2316.006.00-------1.00---------------------1.00-----1.00-1.00-----------1.00---1.00----------
...................................................................TGCGGGGGCTGGGGGTGTGGTT.................................................................................................................................................................225.000.00---1.00------------2.00--1.001.00-------------------------------------------
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCGCAG..................................................2515.005.003.00-----2.00---------------------------------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGCCT........................................................................................2214.004.00----2.00--------2.00--------------------------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGA..........................................................................................204.000.00--1.00--1.00----------------------1.00--1.00--------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGC..........................................................................................2014.004.00------1.00--1.00-------1.001.00---------------------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGCCTTT......................................................................................2413.004.003.00---------------------------------------------------------------
................................................................................................................................................................................GCCGTGACTGCTTTCTCCTCGCAGA.................................................253.000.00--1.00----------------1.00------------------------------------1.00-------
.................................................................................................................................................................................CCGTGACTGCTTTCTCCTCGCAGA.................................................243.000.00--1.00-1.00-------1.00---------------------------------------------------
.....................................................................................................................................................................................................................GACGACCCTCGCCTCCT....................172.000.00----------------------2.00-----------------------------------------
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCT.......................................................2012.002.00--------------------------------------------------1.00----------1.00--
.................................................................................................................................................................................CCGTGACTGCTTTCTCCTCGCAGT.................................................2412.002.001.00------------------------------------------1.00--------------------
............................................................................................................................................AGCGAGGGGAACGTCTGT............................................................................................1812.002.00----------------------------------1.00-1.00---------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGCC.........................................................................................2112.002.00--------------------------------1.00----------------------1.00--------
................................................................................................................................................................................GCCGTGACTGCTTTCTCCTCGCAGT.................................................2512.002.001.00-------------------------------------1.00-------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTC...........................................................................................1912.002.00--------2.00-------------------------------------------------------
..................................................................TTGCGGGGGCTGGGGGTGTCTGCAGAC.............................................................................................................................................................272.000.00--------------2.00-------------------------------------------------
................................................................GATTGCGGGGGCTGGGGGTGTCTGC.................................................................................................................................................................2511.001.00---------------1.00------------------------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGCCTAAT.....................................................................................2511.004.00---------------------------------------------------1.00------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGTTT........................................................................................221.000.00------------------------------------------1.00---------------------
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCTC....................................................231.000.00--------------------------------------------1.00-------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGCCTGAA.....................................................................................251.000.00------------------1.00---------------------------------------------
..................................................................................................................................................................................CGTGACTGCTTTCTCCTCGCAG..................................................2211.001.00------------------------------------------------1.00---------------
..................................................................................................................................GTGCGGACCGAGCGAGACC.....................................................................................................191.000.00----------------------------------------------------------1.00-----
.......................ACAGTGCAGGCAGATCACCCAGAGCGCA.......................................................................................................................................................................................................281.000.00---------------1.00------------------------------------------------
...................................................................TGCGGGGGCTGGGGGTATGG...................................................................................................................................................................201.000.00---1.00------------------------------------------------------------
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCGT....................................................2311.009.00----------------------------------------------1.00-----------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGCAAA.......................................................................................2311.004.00---------------------------1.00------------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTAAA.........................................................................................2111.002.00---------------------------------------1.00------------------------
........................................................................................................................................................................................................................................CAGGAGCTGCTGATTGACA191.000.00---------------------1.00------------------------------------------
..................................................................................................................................................................................CGTGACTGCTTTCTCCTCGCAGA.................................................2311.001.00--1.00-------------------------------------------------------------
...................................................................TGCGGGGGCTGGGGGTGTGTT..................................................................................................................................................................211.000.00---1.00------------------------------------------------------------
.......................................ACCCAGAGTGCAGATCCG.................................................................................................................................................................................................181.000.00-----------------1.00----------------------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGT..........................................................................................201.000.00---------------------------------1.00------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTGTGCCTGTAA....................................................................................261.000.00-----------------------------------------------1.00----------------
.......................................ACCCAGAGTGCAGATTCAG................................................................................................................................................................................................191.000.00-----------------------------------------1.00----------------------
...........................................................................................................................CCGAGGTGTGCGGACCGAGCGAGGG......................................................................................................2511.001.00----------------------------------------1.00-----------------------
...................................................GATAAATTAGATGGATTGCGGG.................................................................................................................................................................................2211.001.00------------------------------1.00---------------------------------
.................................................................................................................................................GGGGAACGTCTGTGCCT........................................................................................1711.001.001.00---------------------------------------------------------------
.......................................ACCCAGAGTGCAGATCTCT................................................................................................................................................................................................191.000.00-------------------------1.00--------------------------------------
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCGCA...................................................2411.001.00----------1.00-----------------------------------------------------
...........................................................................................................................................GAGCGAGGGGAACGTCTGTGC..........................................................................................2111.001.00------------------------1.00---------------------------------------
..................................................................................................................................................................................CGTGACTGCTTTCTCCTCGCAGTAA...............................................2511.001.00--------------------------1.00-------------------------------------
........................................................................................................................................................................................................................................CAGGAGCTGCTGATTGATA191.000.00---------------------1.00------------------------------------------
............................................................................................................................................AGCGAGGGGAACGTCTG.............................................................................................1711.001.00-1.00--------------------------------------------------------------
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCGCAGA.................................................2611.005.00--------------------------------------------------------------1.00-
..................................................................................................................................................................................CGTGACTGCTTTCTCCTCGCAGT.................................................2311.001.00----------1.00-----------------------------------------------------
...............................................................................................................................................................................CGCCGTGACTGCTTTCTCCTCA.....................................................221.000.00-1.00--------------------------------------------------------------
................................................................................................................CACGGGCAGCTCCGAGGTGTGCGGACC...............................................................................................................2711.001.00----------------------------------------------------1.00-----------
...................................................................TGCGGGGGCTGGGGGTATG....................................................................................................................................................................191.000.00---------------------------------------------1.00------------------

Antisense strand
AGTAGAAATACTAGAGGTTAGATACAGTGCAGGCAGATCACCCAGAGTGCAGATAAATTAGATGGATTGCGGGGGCTGGGGGTGTCTGCAGATAAATTAGATGGAGCGGGAACACGGGCAGCTCCGAGGTGTGCGGACCGAGCGAGGGGAACGTCTGTGCCTGTGAATTTGCCAGCGCCGTGACTGCTTTCTCCTCGCAGTGACTCAGTTACAGACGACCCTCGCCTCCGTCCAGGAGCTGCTGATTCAG
...............................................................((.((((((((((((...((((((((................))))..))))...)))))))......))))).))..((((((((((.(((.((((..((......))..))))...)))....))))))))))....................................................
..............................................................63.......................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038860(GSM458543)
MM426. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................AGATAAATTAGATGGATTTC............................................................................................................................................. 202.000.00-----------------------2.00----------------------------------------
....................................................ATAAATTAGATGGATTTTA................................................................................................................................................................................... 192.000.00---------------------------------------------------------1.00--1.00---
....................................................................................................................................................................................................................................AGCAGCTCCTGGACG....... 1570.140.14---------------------------------------------------------------0.14