ID: uc001apj.1_intron_9_0_chr1_8932046_r.3p
GENE: (2)
chr1:8931996-8932245-


(3)
AGO2.ip
(4)
B-CELL
(3)
BRAIN
(8)
BREAST
(23)
CELL-LINE
(2)
CERVIX
(2)
HEART
(3)
HELA
(3)
LIVER
(2)
OTHER
(17)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TCTTTGCAGTAAGTTCTGCAGTACAGGATCATAAACATGTGAAAGGCATGAAGAACAGCCCAGAGCGTTTAATTCACACAGCTGGTAGGAGGAAGAAACAGCTCCCTAATGACAAATGCATCTGTGGGCGGGAGGGGACTTGGGATTGTGCTGGAACTGGATTTCTGAATTGCTACTACATCTTTTTTCCTCTCATCCAGGTCTCTTCAGAGCTGCTGTGCCCAGTGGTGCTTCAACTGGTATCTATGAG
.........................................................................(((((..((..((...(((.((......)).)))....))....))...)))))..(((((((((...((((.((((.(((....((....))......))).)))))))).)))))))))........................................................
........................................................................73.......................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189785SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
GSM359205(GSM359205)
HepG2_nucl_up. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR038856(GSM458539)
D11. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR343336SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577741(Rovira)
total RNA. (breast)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532886(GSM532886)
G850T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR343334SRR343337GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
............................................................................................................................................................................CTACTACATCTTTTTTCCTCTCATCCAG..................................................28121.0021.00-2.00----4.00-2.00---2.00-------1.00-----1.001.00--------1.001.00--1.00----1.001.001.00-1.001.00-----------------------
............................................................................................................................................................................CTACTACATCTTTTTTCC............................................................1819.009.005.00---4.00---------------------------------------------------------------------
..............................................................................................................................................................................................................TCAGAGCTGCTGTGCCCAGTGG......................2224.504.50--4.00-----------------------------------------------------------0.50-----------
.............................................................................ACAGCTGGTAGGAGGAAG...........................................................................................................................................................1814.004.00-----4.00--------------------------------------------------------------------
.........................................................................................................................................................................................................TCTCTTCAGAGCTGCTGTGCCCAGTGGCGC...................302.000.00---2.00----------------------------------------------------------------------
...........................................................................ACACAGCTGGTAGGAGGAAGAAAC.......................................................................................................................................................2412.002.00---------2.00----------------------------------------------------------------
.......................................................................................................................................GGACTTGGGATTGTGCTGGAACTGGATTTCTGAATTGCTACTACATCTTTTTTCCTCTCATCCA...................................................6412.002.00--------------2.00-----------------------------------------------------------
.........................................................................................................................................................................TTGCTACTACATCTTTTTTCCTCTC........................................................2512.002.00-2.00------------------------------------------------------------------------
.......................................................................................................................................................................................................................................TTCAACTGGTATCTATTG.182.000.00----------1.00-------1.00-------------------------------------------------------
..............................................................................CAGCTGGTAGGAGGAAGA..........................................................................................................................................................1822.002.00-------------------------1.00---------------1.00--------------------------------
......................................................................................................................................................................................TTTTTTCCTCTCATCCAG..................................................1812.002.00----------------------------1.00---1.00-----------------------------------------
....................................................................................................................................................TGCTGGAACTGGATTTCTG...................................................................................1912.002.00---------------2.00----------------------------------------------------------
......................................................................................................................................................................................................AGGTCTCTTCAGAGCTGCTGT...............................2121.501.50-----------------1.50--------------------------------------------------------
......................................................................................................................................................................................................AGGTCTCTTCAGAGCTGCTGTGCCCAG.........................2721.501.50---0.50-------1.00--------------------------------------------------------------
.........................................................................................................................................................................................................TCTCTTCAGAGCTGCTG................................1731.331.33-----------------------------------------------------0.67--------------0.330.33----
......................................................................................................................................................................................................AGGTCTCTTCAGAGCTGCTGCCC.............................231.000.00----------------------1.00---------------------------------------------------
..........................................................................................................................................................................................................CTCTTCAGAGCTGCTGTGCCCAAC........................241.000.00--------1.00-----------------------------------------------------------------
.........................................................................................................................................................................................................TCTCTTCAGAGCTGCTGTGCCCAGTGGCG....................291.000.00-----------1.00--------------------------------------------------------------
....................................................................................................................................................................CTGAATTGCTACTACATC....................................................................1811.001.00----------------------------------------------------1.00---------------------
............................................................................................................................TGGGCGGGAGGGGACTTGGA..........................................................................................................201.000.00-------------------------------1.00------------------------------------------
......................................................................................................................................................................................................AGGTCTCTTCAGAGCTGCTGTGCCCAGTGGTG....................3221.001.00--------------------------------------------------------0.50----------0.50------
.............................................................................................................................................................................TACTACATCTTTTTTCCTCTCATCCAG..................................................2711.001.00------------------------------------------1.00-------------------------------
............................................................................CACAGCTGGTAGGAGGAA............................................................................................................................................................1811.001.00----------------------------------1.00---------------------------------------
....................................................................................................................................AGGGGACTTGGGATTGGCAG..................................................................................................201.000.00--------------------------------------------1.00-----------------------------
..............................................................................................................................................................................................................TCAGAGCTGCTGTGCCCAGTGGTGCC..................261.000.00---1.00----------------------------------------------------------------------
..............................................................................................................................................................................ACTACATCTTTTTTCCTTAG........................................................201.000.00----------------1.00---------------------------------------------------------
............................................................................................................................................................................CTACTACATCTTTTTTTTTG..........................................................201.000.00------------------------------1.00-------------------------------------------
.............................................................................................................................................................................................................TTCAGAGCTGCTGTGCCCAGTGTG.....................241.000.00---------------------1.00----------------------------------------------------
..........................................................................CACACAGCTGGTAGGAGGAAGA..........................................................................................................................................................2211.001.00-------1.00------------------------------------------------------------------
.......................................................................................................................................GGACTTGGGATTGTGCTGGAACTGGATTT......................................................................................2911.001.00-------1.00------------------------------------------------------------------
......................................................................................................................................GGGACTTGGGATTGTGCTGGAACTGGATTTCTGAATTGCTACTACATCTTTTTTCCTCTCATCCAG..................................................6611.001.00------------------------1.00-------------------------------------------------
...............................................................................................................................................................................................................................AGTGGTGCTTCAACTGGTAT.......2021.001.00---------1.00----------------------------------------------------------------
.......................................................................................................................................................................................................GGTCTCTTCAGAGCTGCTGTG..............................2121.001.00-----------------------1.00--------------------------------------------------
..........................................................................................................................................................................................................CTCTTCAGAGCTGCTGTGCC............................2021.001.00-------------------------------------------------------0.50--0.50---------------
..................................................................................................................................................................TTCTGAATTGCTACTACATCTT..................................................................2211.001.00---------------------------------------1.00----------------------------------
..........................................AAGGCATGAAGAACAGCCAAGA..........................................................................................................................................................................................221.000.00-------------1.00------------------------------------------------------------
....................................................................................................................................................................................TCTTTTTTCCTCTCATAG....................................................181.000.00----------------1.00---------------------------------------------------------
...........................................AGGCATGAAGAACAGCCCAGAGCG.......................................................................................................................................................................................2411.001.00-------------1.00------------------------------------------------------------
...........................................................................................................................................TTGGGATTGTGCTGGAACTGG..........................................................................................2111.001.00---------------------------------1.00----------------------------------------
...........................................................................................................................................................................GCTACTACATCTTTTTTCCTCTCATCCAG..................................................2911.001.00-----------------------------1.00--------------------------------------------
......................................................................................................................................................................................TTTTTTCCTCTCATCTTCG.................................................191.000.00---------------------------------------------------1.00----------------------
........................AGGATCATAAACATGTGAAAGGC...........................................................................................................................................................................................................2311.001.00------------------------------------------------1.00-------------------------
............................................................................................................................TGGGCGGGAGGGGACTTGGG..........................................................................................................2011.001.00-------------------------------------------1.00------------------------------
................................................................................................................CAAATGCATCTGTGGGCGG.......................................................................................................................1911.001.00-----------------------------------1.00--------------------------------------
.......................................................................................................................................GGACTTGGGATTGTGCTG.................................................................................................1811.001.00-------1.00------------------------------------------------------------------
....................................................................................................................................................................CTGAATTGCTACTACATCTTTTTTCCTCTCATCCAG..................................................3611.001.00--------------------------------------1.00-----------------------------------
.............................................................................................................................................................................................................TTCAGAGCTGCTGTGCCCAGTGGT.....................2420.500.50-------------------0.50------------------------------------------------------
........................................................................................................................................................................................................GTCTCTTCAGAGCTGCTGTGCCCAGTGGTGC...................3120.500.50-------------------------------------------------------------0.50------------
.....................................................................................................................................................................................................................TGCTGTGCCCAGTGGTGCTT.................2020.500.50-----------------------------------------------------------0.50--------------
..................................................................................................................................................................................................................................GGTGCTTCAACTGGTAT.......1720.500.50------------------------------------------------------------------0.50-------
.......................................................................................................................................................................................................GGTCTCTTCAGAGCTGC..................................1720.500.50-----------------------------------------------------------------0.50--------
..............................................................................................................................................................................................................TCAGAGCTGCTGTGCCCAGTGGCGC...................2520.504.50---0.50----------------------------------------------------------------------
......................................................................................................................................................................................................................GCTGTGCCCAGTGGTGCTTCA...............2120.500.50----------------------------------------------------------------0.50---------
.........................................................................................................................................................................................................TCTCTTCAGAGCTGCTGTGCC............................2120.500.50-----------------------0.50--------------------------------------------------
....................................................................................................................................................................................................................CTGCTGTGCCCAGTGGTGCTTCA...............2320.500.50--------------------0.50-----------------------------------------------------
............................................................................................................................................................................................................................CCCAGTGGTGCTTCAACTG...........1920.500.50------------------0.50-------------------------------------------------------
..............................................................................................................................................................................................................TCAGAGCTGCTGTGCCCAGTGGTGCTTC................2820.500.50---------------------0.50----------------------------------------------------
.........................................................................................................................................................................................................TCTCTTCAGAGCTGCTGTGCCCAGTGGTGC...................3020.500.50----------------------0.50---------------------------------------------------
...............................................................................................................................................................................................................................AGTGGTGCTTCAACTGGT.........1820.500.50---------------------------------------------------------------0.50----------
......................................................................................................................................................................................................AGGTCTCTTCAGAGCTGCTGTGCC............................2420.500.50-------0.50------------------------------------------------------------------
..............................................................................................................................................................................................................TCAGAGCTGCTGTGCCCAGTGGT.....................2320.500.50---------------------------------------------------------0.50----------------
....................................................................................................................................................................................................................CTGCTGTGCCCAGTGGT.....................1730.330.33------------------------------------------------------0.33-------------------
...............................................................................................................................................................................................................CAGAGCTGCTGTGCCCA..........................1750.200.20----------------------------------------------------------------------0.20---
..........................................................................................................................................................................................................................TGCCCAGTGGTGCTTC................1650.200.20------------------------------------------------------0.20-------------------
.............................................................................................................................................GGGATTGTGCTGGAAC.............................................................................................1650.200.20-------0.20------------------------------------------------------------------
.....................................................................................................CTCCCTAATGACAAATG....................................................................................................................................1780.120.12-----------------------------------------------------------------------0.12--
.............................................................................................................................GGGCGGGAGGGGACT..............................................................................................................1590.110.11-------------------------------------------------------------------------0.11
............................................................................................................................................................................CTACTACATCTTTTT...............................................................1590.110.11--------------------------------------------------------------------0.11-----
................................................................................................................................CGGGAGGGGACTTGG...........................................................................................................1590.110.11------------------------------------------------------------------------0.11-

Antisense strand
TCTTTGCAGTAAGTTCTGCAGTACAGGATCATAAACATGTGAAAGGCATGAAGAACAGCCCAGAGCGTTTAATTCACACAGCTGGTAGGAGGAAGAAACAGCTCCCTAATGACAAATGCATCTGTGGGCGGGAGGGGACTTGGGATTGTGCTGGAACTGGATTTCTGAATTGCTACTACATCTTTTTTCCTCTCATCCAGGTCTCTTCAGAGCTGCTGTGCCCAGTGGTGCTTCAACTGGTATCTATGAG
.........................................................................(((((..((..((...(((.((......)).)))....))....))...)))))..(((((((((...((((.((((.(((....((....))......))).)))))))).)))))))))........................................................
........................................................................73.......................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189785SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
GSM359205(GSM359205)
HepG2_nucl_up. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR038856(GSM458539)
D11. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR343336SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577741(Rovira)
total RNA. (breast)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532886(GSM532886)
G850T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR343334SRR343337GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.....................................................................TAATTCACACAGCTGGGGCA................................................................................................................................................................. 201.000.00-------------------1.00------------------------------------------------------
..............................ATAAACATGTGAAAGTAT.......................................................................................................................................................................................................... 181.000.00----------1.00---------------------------------------------------------------
..................................................................................................................................................................................ATGAGAGGAAAAAAGATG...................................................... 1820.500.50------------------------------------------------------------0.50-------------