ID: uc001apj.1_intron_8_0_chr1_8930570_r.3p
GENE: (3)
chr1:8930520-8930769-


(2)
AGO2.ip 		(5)
B-CELL 		(4)
BRAIN 		(10)
BREAST 		(30)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(9)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(34)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TCTGGGGTCCTAGGTAGGAGCACTCAGACTGGGCCGGAAAGTCCTCCGATTCTGGGGGGAAAGGGGAGAGGGGGAAGAGGTCCCACAGAAGGTCCCTTGGTGGGCTTCCGCGTCGGCCTCAACAGTGGTTCTCTCTAACAATGCTGCTCAAGCCTGTTTTAAAGTTAATGTCAGTAATTTGATTTGATTGTTCCTTCCAGGTGTCTCAAAGGCTGTTGAGCACATCAATAAAACTATTGCGCCTGCCCTG
.............................................................................................................................(((........((((..(((.....))).))))....((((((.(((((....))))))))))).......)))...................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR189784SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038854(GSM458537)
MM653. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR037938(GSM510476)
293Red. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR029128(GSM416757)
H520. (cell line)		GSM532890(GSM532890)
G576T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
............................................................................................................................................................................AGTAATTTGATTTGATTGTTCCTTCCAGA.................................................29114.001.00--14.00------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TCTCAAAGGCTGTTGAGCACATC........................23113.0013.0013.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................GTAATTTGATTTGATTGTTCCTTCCAG..................................................27113.0013.00-5.00---------------1.00--1.00--1.001.00-1.00--------------1.00----------------------1.00-----------1.00----------------------------------
...................................................................................................................................................................................TGATTTGATTGTTCCTTCCAGA.................................................2218.003.00-2.00-------------3.00-----------2.00-------------------1.00---------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGCTGTTGAGCACATC........................1927.507.502.00---4.00--------------------------------------------------------------------------0.50-----0.50------0.50------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCAA......................2027.007.006.00-----------1.00--------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGCTGTTGAGCACATCAA......................1924.004.003.50---------------------------------------------------------------------0.50----------------------------------------
.......................................................................................................................................................................................................GGTGTCTCAAAGGCTGTTG................................1914.004.00------2.00-----2.00--------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TAATTTGATTTGATTGTTCCTTCCAG..................................................2614.004.00-----------------------------------------------------1.00--1.001.00--------1.00--------------------------------------------
..................................................................................................................................................................................TTGATTTGATTGTTCCTTCCAGAA................................................2414.004.00-4.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CTGTTGAGCACATCAATAA...................1924.004.004.00--------------------------------------------------------------------------------------------------------------
.........................................................................................................................................ACAATGCTGCTCAAGCCTGTTTTAAAGTTAATGTCAGTAATTTGATTTGATTGTTCCTTCCAG..................................................6314.004.00---------4.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TTGATTTGATTGTTCCTTCCAG..................................................2214.004.00----------2.00-----1.00---------------------1.00------------------------------------------------------------------------
.................................................................................................................................................................................TTTGATTTGATTGTTCCTTCC....................................................2113.003.00---2.00-------------------------------------------------------1.00---------------------------------------------------
..................................................................................................................................................................................TTGATTTGATTGTTCCTTCCAGA.................................................2313.004.00-2.00--------------1.00----------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTGTCTCAAAGGCTGTTGAGC.............................2113.003.00----------------------1.00--------------------1.00------------------------1.00------------------------------------------
........................................................................................................................................................................................................GTGTCTCAAAGGCTGTTGAG..............................2013.003.00--------2.00-------------1.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................TGATTTGATTGTTCCTTCCAG..................................................2113.003.00-------------------------1.00------------------------------------------------1.00-------1.00----------------------------
............................................................................................................................................................................................................................CACATCAATAAAACTATTG...........1923.003.00-------0.500.50--0.50--------------------------------1.00---------------------------------------0.50--------------------------
..............................................................................................................................................................................................................CAAAGGCTGTTGAGCACATC........................2022.502.50-0.50--1.50------------------------------0.50---------------------------------------------------------------------------
.............................................................................................................................................................................GTAATTTGATTTGATTGTTCCTTCCAGA.................................................2812.0013.00-2.00-------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCAATA....................2222.002.00---1.00-----------------------------0.50-----------------------------------------------------------0.50-----------------
...........AGGTAGGAGCACTCAGACTGGGCCGG.....................................................................................................................................................................................................................2612.002.00--------------1.00--------------------------------------------------------1.00---------------------------------------
.......................................................................................................................................................................................................GGTGTCTCAAAGGCTGTTGAGC.............................2212.002.00-----1.00------------------------------------1.00--------------------------------------------------------------------
................................................................................................................................TTCTCTCTAACAATGCTGCTCAAG..................................................................................................2412.002.00-------1.00-----------------------------1.00-------------------------------------------------------------------------
.................................................................................................................................................................................TTTGATTTGATTGTTCCTTCCAG..................................................2312.002.00----------1.00--------------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................................................................................TCTCAAAGGCTGTTGAGCACATCAAT.....................2612.002.00--------1.00----------1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................GTAATTTGATTTGATTGTTTC........................................................212.000.00---2.00-----------------------------------------------------------------------------------------------------------
.................................................................................................................................TCTCTCTAACAATGCTGCTCAAG..................................................................................................2312.002.00-------1.00---1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TCAAAGGCTGTTGAGCAAT..........................192.000.00---------------------2.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGCTGTTGAGCACATCAAT.....................2221.501.50-----------------------------------------------------------------0.50----0.50------------------------------0.50---------
.................................................................................................................................................................................................................AGGCTGTTGAGCACATCAAT.....................2021.501.50----------0.50-----------------------------------------------------------------------------0.50------0.50---------------
.............................................................................................................................................................................................................TCAAAGGCTGTTGAGCACATC........................2121.501.50-1.00-----------------------------0.50-------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGCTGTTGAGCACATC........................1721.501.50------------------0.50-----------------------------------------------------------------------------0.50-------0.50------
..............................................................................................................................................................................................................CAAAGGCTGTTGAGCACATCAAT.....................2321.501.50------------------0.50----------------1.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................AGCACATCAATAAAACTATT............2021.501.50------------------------------------1.50--------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGCTGTTGAGCACATCAT......................1921.000.50--------------------------------1.00------------------------------------------------------------------------------
.................................................................................................................................................................................................CTTCCAGGTGTCTCAAAGG......................................1911.001.00-------------------------------------------------------------1.00-------------------------------------------------
.........................................................................................AGGTCCCTTGGTGGGCTTCCGCGTCGGCCT...................................................................................................................................3011.001.00-------------1.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TGTCTCAAAGGCTGTTGAGCA............................2111.001.00------1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGCTGTTGAGCACATCAATA....................2121.001.00----------------------------0.50-------------------------------------------------------------------------0.50--------
.................................................................................................................................................................................TTTGATTTGATTGTTCCTTCCA...................................................2211.001.00---1.00-----------------------------------------------------------------------------------------------------------
........................................................................................AAGGTCCCTTGGTGGGCTTCCGCGTCGGCCT...................................................................................................................................3111.001.00--------------1.00------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTTGATTTGATTGTTCCTTCCAGA.................................................2411.002.00-----------------------1.00---------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCAATAA...................2321.001.00---------------------------------------------------------------------------------------0.50---0.50-------------------
....................CACTCAGACTGGGCCGGAAAGT................................................................................................................................................................................................................2211.001.00-----------------------------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................GTCTCAAAGGCTGTTGAG..............................1821.001.00------------------1.00--------------------------------------------------------------------------------------------
....................CACTCAGACTGGGCCGGAAAGTCCTCCG..........................................................................................................................................................................................................2811.001.00------------------------1.00--------------------------------------------------------------------------------------
.............................................................AGGGGAGAGGGGGAAGAGGTCCCACAGA.................................................................................................................................................................2811.001.00--------------1.00------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TGTCTCAAAGGCTGTTGAG..............................1911.001.00-----1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................AATTTGATTTGATTGTTCCTTCCAGAAG...............................................281.000.00-1.00-------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................TAATGTCAGTAATTTGATTTGATTGT...........................................................2611.001.00---------------------------------------------------------------1.00-----------------------------------------------
...........................................................................................................................................................................................................TCTCAAAGGCTGTTGAGCACATCAAAAA...................281.000.00-------1.00-------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TTTGATTTGATTGTTCCTTCCAGAA................................................2511.002.00-1.00-------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TGAGCACATCAATAAAACTATTGC..........2411.001.00----------------------------1.00----------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATC........................1821.001.00--------------------------------------------------------------------------------------0.50--0.50---------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCAAT.....................2121.001.00-----------------------------------------------------------------0.50-------------------------------------0.50-------
.............................................................................................................................................................................................................TCAAAGGCTGTTGAGCATT..........................191.000.00-------------------------------------------------------------------1.00-------------------------------------------
.....................................................................................................................................................................................ATTTGATTGTTCCTTCCAG..................................................1911.001.00-------------------------------------------------------------------------1.00-------------------------------------
......................................................................................................GGCTTCCGCGTCGGC.....................................................................................................................................1511.001.00------------------------------------------------------------------------------1.00--------------------------------
................................................................................................................................................TGCTCAAGCCTGTTTTAAAGTTAATGTCAGTAATTTGATTTGATTGTTCC........................................................5011.001.00--------------------------1.00------------------------------------------------------------------------------------
........................................................................................AAGGTCCCTTGGTGGGCTTCCGCGTCGGCCCC..................................................................................................................................321.000.00-------------1.00-------------------------------------------------------------------------------------------------
....................................................................................................................................................................................GATTTGATTGTTCCTTCCAGGTGTCTCA..........................................2811.001.00---------------------------------------------------------------------------------1.00-----------------------------
....................................................................................................................................................................................GATTTGATTGTTCCTTCCAGAAA...............................................231.000.00-------------------------1.00-------------------------------------------------------------------------------------
...........................................................................................................CCGCGTCGGCCTCAACAGTGGTTCTCCC...................................................................................................................281.000.00-------------1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTGTCTCAAAGGCTGT..................................1611.001.00--------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................CTCAAAGGCTGTTGAGCACAT.........................2111.001.00---------------------------------------------------------------------1.00-----------------------------------------
...............................................................................................................................................................................AATTTGATTTGATTGTTCCTTCCA...................................................2411.001.00------------------------------------------------------------1.00--------------------------------------------------
.........................................................................................................................................................................GTCAGTAATTTGATTTGATTGTTCC........................................................2511.001.00---------------------------------------------------1.00-----------------------------------------------------------
.......................................................................................................................................................................................................GGTGTCTCAAAGGCTGTTGAGCACATC........................2711.001.00-------------------------------------------------------1.00-------------------------------------------------------
............................................................................................................................................................................AGTAATTTGATTTGATTGTTCCTTCCAG..................................................2811.001.00---------------------------------------------------------------------------1.00-----------------------------------
............................................................................................................................................................................................................CTCAAAGGCTGTTGAGCACATCAATAAAAC................3011.001.00----------------------------------------------1.00----------------------------------------------------------------
............GGTAGGAGCACTCAGACTGGGAGAA.....................................................................................................................................................................................................................251.000.00-1.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................CTTCCAGGTGTCTCAAAGGCTGTTG................................2511.001.00-----------------------------1.00---------------------------------------------------------------------------------
........................................................................................................................................................................................................GTGTCTCAAAGGCTGTTG................................1811.001.00------1.00--------------------------------------------------------------------------------------------------------
....................CACTCAGACTGGGCCGGA....................................................................................................................................................................................................................1811.001.00-----1.00---------------------------------------------------------------------------------------------------------
................................................................................................................................TTCTCTCTAACAATGCTGCTCA....................................................................................................2211.001.00-------1.00-------------------------------------------------------------------------------------------------------
............GGTAGGAGCACTCAGACTGGGC........................................................................................................................................................................................................................2211.001.00----------------------------------------------------------1.00----------------------------------------------------
.................GAGCACTCAGACTGGGCCGGA....................................................................................................................................................................................................................2111.001.00---------------------------------1.00-----------------------------------------------------------------------------
.........................................................GGAAAGGGGAGAGGGGGAAGAGGTCCCA.....................................................................................................................................................................2811.001.00---------------------------------------1.00-----------------------------------------------------------------------
..............................................................................................................................................................................TAATTTGATTTGATTGTTCCT.......................................................2111.001.00--------------------------------------------------------------------------------1.00------------------------------
........................................................................................................................................................................................................GTGTCTCAAAGGCTGTTGAGCA............................2211.001.00----------------------------------------1.00----------------------------------------------------------------------
...............................................................................................................................................................................AATTTGATTTGATTGTTCCTT......................................................2111.001.00-------------------1.00-------------------------------------------------------------------------------------------
..................................................................................................................................................................................................TTCCAGGTGTCTCAAAGGCTGTTGAGC.............................2711.001.00-------------------------------1.00-------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCA.......................1921.001.00-1.00-------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TTGATTTGATTGTTCCTTCCA...................................................2111.001.00--------------------------------------------------1.00------------------------------------------------------------
.......................................................................................................................................................................................................GGTGTCTCAAAGGCTGTTGAGCC............................2311.002.00-----------------1.00---------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CACATCAATAAAACTATTGCGCCTGC....2611.001.00-----------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................GTAATTTGATTTGATTGTTCCTTCCA...................................................2611.001.00----------------1.00----------------------------------------------------------------------------------------------
............................................................................................................................GTGGTTCTCTCTAACAATGCTGCTCAAGCC................................................................................................3011.001.00-----------------------------------------------------------------------------1.00---------------------------------
.............................................................................................................................................................................GTAATTTGATTTGATTGTTCCTTCCAGAA................................................2911.0013.00--------------------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................CAAAGGCTGTTGAGCACA..........................1830.670.67----------------------------------------------------------------------------------------------------------0.330.33---
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCAATAAAAC................2620.500.50------------------------------------------------------------------------0.50--------------------------------------
...............................................................................................................................................................................................................AAAGGCTGTTGAGCACATCAA......................2120.500.50--------------------------------------------------------------------------------------------------0.50------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCAATAAAACT...............2720.500.50-----------------0.50---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TCAAAGGCTGTTGAGCACATCAATAA...................2620.500.50----------------------------------------------------------------------------------------------0.50----------------
...............................................................................................................................................................................................................AAAGGCTGTTGAGCACATCAATAAAAC................2720.500.50--------------------------------0.50------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCAATAAA..................2420.500.50----------------------------------0.50----------------------------------------------------------------------------
......................................................................................................................................................................................TTTGATTGTTCCTTCCAG..................................................1820.500.50---------------------------------------------------------------------------------------------------------0.50-----
....................................................................................................................................................................................................................................TAAAACTATTGCGCC.......1520.500.50-------------------------------------------------------------------------------------------------0.50-------------
..........................................................................................................................................................................................................................AGCACATCAATAAAACTAT.............1920.500.50----------------------------------------------------------------------------------------------------0.50----------
..............................................................................................................................................................................................................CAAAGGCTGTTGAGCACAT.........................1920.500.50------0.50--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CTGTTGAGCACATCAATAAAAC................2220.500.50------------------------------------------------------------------------------------------0.50--------------------
.................................................................................................................................................................................................................AGGCTGTTGAGCACATCA.......................1820.500.50------0.50--------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AGCACATCAATAAAACTATTG...........2120.500.50-------------------------------------0.50-------------------------------------------------------------------------
.................................................................................................................................................................................................................AGGCTGTTGAGCACATCAATAAAAC................2520.500.50---------------------------------------------------------------------------------------------------0.50-----------
................................................................................................................................................................................................................AAGGCTGTTGAGCACATCAATAAAA.................2520.500.50-------------------------------------------------------------------------------0.50-------------------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACA..........................1630.330.33----------------------------0.33----------------------------------------------------------------------------------
...............................................................................................................................................................................................................AAAGGCTGTTGAGCACA..........................1730.330.33-------0.33-------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCAC...........................1560.330.33----------------------------0.17--------------------------------------------------------0.17-------------------------
................................................................................................................................................................................................................AAGGCTGTTGAGCACAGA........................1830.330.33----------0.33----------------------------------------------------------------------------------------------------
.............GTAGGAGCACTCAGA..............................................................................................................................................................................................................................1540.250.25------------------------------------------------------------------------------------------------------------0.25--
.............................................................................................................................................................................................................TCAAAGGCTGTTGAGC.............................1640.250.25--------------------------------------0.25------------------------------------------------------------------------
..............................................................................................................................................................................................................................CATCAATAAAACTATTG...........1740.250.25------------------------------------------------------------------------------------0.25--------------------------
..............................................................................................................................................................................................................CAAAGGCTGTTGAGC.............................1560.170.17-------------------------------------------------------------------------------------------------------------0.17-

Antisense strand
TCTGGGGTCCTAGGTAGGAGCACTCAGACTGGGCCGGAAAGTCCTCCGATTCTGGGGGGAAAGGGGAGAGGGGGAAGAGGTCCCACAGAAGGTCCCTTGGTGGGCTTCCGCGTCGGCCTCAACAGTGGTTCTCTCTAACAATGCTGCTCAAGCCTGTTTTAAAGTTAATGTCAGTAATTTGATTTGATTGTTCCTTCCAGGTGTCTCAAAGGCTGTTGAGCACATCAATAAAACTATTGCGCCTGCCCTG
.............................................................................................................................(((........((((..(((.....))).))))....((((((.(((((....))))))))))).......)))...................................................
...........................................................................................................................124.........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR189784SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189782SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038854(GSM458537)
MM653. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR037938(GSM510476)
293Red. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR029128(GSM416757)
H520. (cell line)		GSM532890(GSM532890)
G576T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...........................................................................................GTCCCTTGGTGGGCTGCCA............................................................................................................................................ 195.000.00------------------------------2.00---------------------1.00-1.00-------1.00------------------------------------------------
............................................................AAGGGGAGAGGGGGACCTC........................................................................................................................................................................... 192.000.00-----2.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGCCTGTTTTAAAGTGTAC................................................................................. 191.000.00-----------------------------------------------------------------------------------1.00---------------------------
...........AGGTAGGAGCACTCAGGACT........................................................................................................................................................................................................................... 201.000.00------------------------------------------------1.00--------------------------------------------------------------
....................................................................................................................................................................................GATTTGATTGTTCCTTCTTGT................................................. 211.000.00-----------1.00---------------------------------------------------------------------------------------------------
...........................................................................................GTCCCTTGGTGGGCTGCGA............................................................................................................................................ 191.000.00----------------------------------1.00----------------------------------------------------------------------------
................................................................GGAGAGGGGGAAGAGGGCC....................................................................................................................................................................... 191.000.00---------------------------------------------1.00-----------------------------------------------------------------
.....................................................................................................................................TTGAGCAGCATTGTTAGA................................................................................................... 1820.500.50------------------------------------------------------------------------0.50--------------------------------------
..............................................................................................GGAAGCCCACCAAGG............................................................................................................................................. 1570.140.14--------------------------------------------------------------------------------------------------------------0.14