ID: uc001aph.1_intron_5_0_chr1_8616631_r.5p
GENE: RERE(5)
chr1:8617277-8617526-


(9)
B-CELL
(3)
BREAST
(13)
CELL-LINE
(3)
CERVIX
(1)
HEART
(1)
HELA
(3)
LIVER
(3)
OTHER
(1)
RRP40.ip
(26)
SKIN
(1)
XRN.ip

Sense strand
TCCAGATTCTGTGTATCAGCATTTGGTTCAGGATCGACATAATGAAAATGGTAAATATGTCCTTGTGGTTTGATTTGTGTGTTTCTTAGCTTTGGGCAAAGTTCTTTCTAAAGACATTTCATTAAATGAAGATAACTTTTTGAAAAATGGATTTTGGAGTGTTGGTAGGCCTTATGCTTGATGATTCACATTGGCTACCAGTTAGTCACGTGAGGTGGGTCTGTCCCTCTCTAGTTCCAGATGAGGAAAC
...................................................................................((...((((....((((((((((((.((((...((((((...))))))....))))..))))...))))))))))))...)).....................................................................................
................................................................................81....................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040028(GSM532913)
G026N. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
................................................................................................................................................AAATGGATTTTGGAGCAGG.......................................................................................19108.000.0014.0013.0013.007.005.001.004.005.004.004.002.00-1.003.003.003.00---1.00-1.002.002.001.00-----1.001.00--1.00-1.001.001.00-1.001.001.00-1.00-1.00----1.001.00-1.00--1.001.00-1.001.001.00--
................................................................................................................................................AAATGGATTTTGGAGCAG........................................................................................1817.000.001.00---1.004.00-----2.002.00-----1.00------2.001.00------1.00--------------1.00----1.00-----------
................................................................................................................................................AAATGGATTTTGGAGCA.........................................................................................1711.000.00------1.00---2.001.00----2.00-1.001.00------1.00--1.00---------1.00-------------------------
.....................................................................................TTAGCTTTGGGCAAAAAA...................................................................................................................................................181.000.00---------------------------------------------1.00-------------------
................................................................................GTTTCTTAGCTTTGGGTCA.......................................................................................................................................................191.000.00------------------------1.00----------------------------------------
..................GCATTTGGTTCAGGATCGACATAATGAA............................................................................................................................................................................................................2811.001.00--------------------------------------------------1.00--------------
.................................................................TGGTTTGATTTGTGTTCCC......................................................................................................................................................................191.000.00-------------------------------------------------1.00---------------
............................CAGGATCGACATAATGAAAATG........................................................................................................................................................................................................2211.001.00-----------------------------------------------1.00-----------------
.....................................................................................................................................................GATTTTGGAGTGTTGGTAGGCCTTATG..........................................................................2711.001.00-----------------------------------1.00-----------------------------
................................................................................................................................................AAATGGATTTTGGAGTAGG.......................................................................................191.000.00---------------------1.00-------------------------------------------
............................................................CCTTGTGGTTTGATTTTACT..........................................................................................................................................................................201.000.00---------------------------------------------------------------1.00-
................................................................................................................................................AAATGGATTTTGGAGCATG.......................................................................................191.000.00---1.00-------------------------------------------------------------
................................................................................................................................................AAATGGATTTTGGAGCAAT.......................................................................................191.000.00---------------------------1.00-------------------------------------
..........................................................GTCCTTGTGGTTTGAACT..............................................................................................................................................................................181.000.00----------------------------------------------------------------1.00
...................CATTTGGTTCAGGATCGACATAATG..............................................................................................................................................................................................................2511.001.00--------------------------------1.00--------------------------------
..................GCATTTGGTTCAGGATCGACATA.................................................................................................................................................................................................................2311.001.00--------------------1.00--------------------------------------------
................................................................................................................................................AAATGGATTTTGGAGTAGGG......................................................................................201.000.00-------------------------------------------------------1.00---------
............................................................................................................TAAAGACATTTCATTGTG............................................................................................................................181.000.00-------------------------------------------1.00---------------------
.............................AGGATCGACATAATGAAAATGA.......................................................................................................................................................................................................221.000.00--------------------------------------------------------1.00--------
................CAGCATTTGGTTCAGGATCGAC....................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------1.00-----
................CAGCATTTGGTTCAGGATCGACA...................................................................................................................................................................................................................2311.001.00--------------------1.00--------------------------------------------
.................................................................................................................................................AATGGATTTTGGAGTGTTGGTAGGCCT..............................................................................2711.001.00---------------------------1.00-------------------------------------

Antisense strand
TCCAGATTCTGTGTATCAGCATTTGGTTCAGGATCGACATAATGAAAATGGTAAATATGTCCTTGTGGTTTGATTTGTGTGTTTCTTAGCTTTGGGCAAAGTTCTTTCTAAAGACATTTCATTAAATGAAGATAACTTTTTGAAAAATGGATTTTGGAGTGTTGGTAGGCCTTATGCTTGATGATTCACATTGGCTACCAGTTAGTCACGTGAGGTGGGTCTGTCCCTCTCTAGTTCCAGATGAGGAAAC
...................................................................................((...((((....((((((((((((.((((...((((((...))))))....))))..))))...))))))))))))...)).....................................................................................
................................................................................81....................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040028(GSM532913)
G026N. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
............................................AAAATGGTAAATATGTATTG.......................................................................................................................................................................................... 201.000.00-----------------1.00-----------------------------------------------
.......................................................................................................................................................TTTTGGAGTGTTGGTACAG................................................................................ 191.000.00-----------------1.00-----------------------------------------------
.....................................................................................................................................................GATTTTGGAGTGTTGTG.................................................................................... 171.000.00----------------------------1.00------------------------------------